CK935596

Overview
NameCK935596
Unique NameCK935596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK935596 vs. ExPASy Swiss-Prot
Match: VAPA_MOUSE (Vesicle-associated membrane protein-associated protein A OS=Mus musculus GN=Vapa PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 1 
Query:   79 PLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVSPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSV 324
            P +LKF       ++ +L+L N +D  V FKVKTT P++YCVRPN+GI+ P S   + V +Q   +  P+ + K KF++Q++
Sbjct:   20 PSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQ-PFDYDPNEKSKHKFMVQTI 100
[Close]
BLAST of CK935596 vs. ExPASy Swiss-Prot
Match: VAPA_BOVIN (Vesicle-associated membrane protein-associated protein A OS=Bos taurus GN=VAPA PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 1 
Query:   79 PLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVSPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSV 324
            P +LKF       ++ +L+L N +D  V FKVKTT P++YCVRPN+GI+ P  T  + V +Q   +  P+ + K KF++Q++
Sbjct:   20 PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGLTVTVSVMLQ-PFDYDPNEKSKHKFMVQTI 100
The following BLAST results are available for this feature:
BLAST of CK935596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
VAPA_MOUSE7.963e-1140.24Vesicle-associated membrane protein-associated pro... [more]
VAPA_BOVIN7.963e-1140.24Vesicle-associated membrane protein-associated pro... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_H10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935596 ID=CK935596; Name=CK935596; organism=Citrus sinensis; type=EST; length=792bp
GGGGAAAAAAACAGCTTCGATCTTCTCTCTCAACATTGTTTTTGGAAAAT
GAGCACGGGAGAGCTTCTAAGCATCGAGCCTCTAGAGCTCAAATTTCCCT
TTGAACTGAAGAAGCAGATCTCTTGTTCTCTTCAATTGTCGAATAAAACC
GACAATTATGTAGCCTTTAAGGTGAAAACAACAAACCCAAAGAAGTACTG
TGTGCGTCCAAACACTGGGATTGTTTCGCCTCGATCTACATGTGATATTA
TAGTTACCATGCAAGCGCAAAAAGAGGCACCTCCTGACATGCAATGTAAG
GATAAGTTTCTTCTTCAGAGTGTAAAAACGAATGATGGAACAACCGCCAA
GGATATTAATGCTGAAATGTTTAATAAGGAGGCAGGGCATGTGGTTGAGG
AGTGCAAATTGAGAGTGATTTATGTTTCTCCACCGCAACCTCCATCTCCT
GTTCCTGAAGGATCGGAAGAAGGGTCTTCACCCAGGGGTTCTGTGTCAGA
CAATGGCCATGTGAATAGCGCTGAGTTTGCTGCTGCTGCCAGAGCGTTTA
CTGAGCGGATTGAACATCAAGACAAAAGCACAGAGGCCAGAGCTCTTATT
TCAAAGCTGAAAGATGAGAAAAATAATGCAGTCCAACAAAATAATAAGCT
TCGTCAGGATCTGGAACTCCTGAGGCGTGAAGGCAAAAAAAATCGTGGTG
GCGTATCATTCATATTTGTCATTTTGGTTGGCTTGGTTGGCATTGTTTTG
GGGTACGTGATGAAGAAATCATAAGTATCTGTCCACTACAGG
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