CK935601

Overview
NameCK935601
Unique NameCK935601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935601 vs. ExPASy Swiss-Prot
Match: MFT_ARATH (Protein MOTHER of FT and TF 1 OS=Arabidopsis thaliana GN=MFT PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.389e-33
Identity = 79/165 (47.88%), Postives = 100/165 (60.61%), Query Frame = 1
Query:  145 DPLIVGRVVGDVLDNFTRTIPMRITYSNKDVNNGRELKPSEVLNQPRAEIGG--DDLRTFYTLVMVXXXXXXXXXXXLREYLHWLVTDIPATTGASFGQEIVNYESPRPTMGIHRFVFVSFRQLG--RQTVYAPGWRQNFSTRDFAELYNLGPPVAAVYFNCQRE 627
            DPL+VGRV+GDVLD F  T  M + +  K + NG E+KPS  +N P+  I G  D+L   YTLVM            +RE++HW+V DIP  T  S G+EI+ Y  PRP +GIHR++ V FRQ       V  P  R NFSTR FA  ++LG PVA VYFN Q+E
Sbjct:    6 DPLVVGRVIGDVLDMFIPTANMSVYFGPKHITNGCEIKPSTAVNPPKVNISGHSDEL---YTLVMTDPDAPSPSEPNMREWVHWIVVDIPGGTNPSRGKEILPYMEPRPPVGIHRYILVLFRQNSPVGLMVQQPPSRANFSTRMFAGHFDLGLPVATVYFNAQKE 167          
BLAST of CK935601 vs. ExPASy Swiss-Prot
Match: OV16_ONCVO (OV-16 antigen OS=Onchocerca volvulus GN=OV16 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.306e-15
Identity = 57/195 (29.23%), Postives = 94/195 (48.21%), Query Frame = 1
Query:   67 CVYLFVLSVVECLFVFSVVDMSSRERDPLIVGRVVGD--VLDNFTRTIPMR---ITYSNKDVNNGRELKPSEVLNQPRAEIGGDDLRTFYTLVMVXXXXXXXXXXXLREYLHWLVTDIPATTGASFGQEIVNY--ESPRPTMGIHRFVFVSFRQLGRQT-VYAPGWRQNFSTRDFAELYNLGPPVAAVYFNCQRE 627
            C+ + +  V+      S  + + ++  P++V     +  ++ +   T P +   ++Y+N  VN G EL P++V NQP       +    YTLVM             RE+ HWL+ +I +    S G  + +Y    PR   G+HR+VF+ ++Q G  T     G R+NF   DFA  ++LG PVA  +F  + E
Sbjct:    3 CLQVVIAIVLYSFGKISAENANCKKCTPMLVDSAFKEHGIVPDVVSTAPTKLVNVSYNNLTVNLGNELTPTQVKNQPTKVSWDAEPGALYTLVMTDPDAPSRKNPVFREWHHWLIINI-SGQNVSSGTVLSDYIGSGPRKGTGLHRYVFLVYKQPGSITDTQHGGNRRNFKVMDFANKHHLGNPVAGNFFQAKHE 196          
BLAST of CK935601 vs. ExPASy Swiss-Prot
Match: D1_ONCVO (Protein D1 (Fragment) OS=Onchocerca volvulus GN=D1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.487e-14
Identity = 49/143 (34.27%), Postives = 71/143 (49.65%), Query Frame = 1
Query:  208 MRITYSNKDVNNGRELKPSEVLNQPRAEIGGDDLRTFYTLVMVXXXXXXXXXXXLREYLHWLVTDIPATTGASFGQEIVNY--ESPRPTMGIHRFVFVSFRQLGRQT-VYAPGWRQNFSTRDFAELYNLGPPVAAVYFNCQRE 627
            + ++Y+N  VN G EL P++V NQP       +    YTLVM             RE+ HWL+ +I +    S G  + +Y    P    G+HR+VF+ ++Q G  T     G R NF   DFA  ++LG PVA  +F  + E
Sbjct:   10 VNVSYNNLTVNLGNELTPTQVKNQPTKVSWDAEPGALYTLVMTDPDAPSRKNPVFREWHHWLIINI-SGQNVSSGTVLSDYIGSGPPKGTGLHRYVFLVYKQPGSITDTQHGGNRPNFKVMDFANKHHLGNPVAGNFFQAKHE 151          
BLAST of CK935601 vs. ExPASy Swiss-Prot
Match: D3_ONCVO (Protein D3 (Fragment) OS=Onchocerca volvulus GN=D3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.144e-11
Identity = 45/134 (33.58%), Postives = 65/134 (48.51%), Query Frame = 1
Query:  235 VNNGRELKPSEVLNQPRAEIGGDDLRTFYTLVMVXXXXXXXXXXXLREYLHWLVTDIPA--TTGASFGQEIVNYESPRPTMGIHRFVFVSFRQLGRQT-VYAPGWRQNFSTRDFAELYNLGPPVAAVYFNCQRE 627
            VN G EL P++V NQP       +    YTLVM             RE+ HWL+ +I     +  +   + +    P+ T G+HR+VF+ ++Q G  T     G R NF   DFA  ++LG PVA  +F  + E
Sbjct:    1 VNLGNELTPTQVKNQPTKVSWDAEPGALYTLVMTDPDAPSRKNPVFREWHHWLIINISGQNVSSGTVLSDYIGSGQPKGT-GLHRYVFLVYKQPGSITDTQHGGNRPNFKVMDFANKHHLGNPVAGNFFQAKHE 133          
The following BLAST results are available for this feature:
BLAST of CK935601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
MFT_ARATH1.389e-3347.88Protein MOTHER of FT and TF 1 OS=Arabidopsis thali... [more]
OV16_ONCVO1.306e-1529.23OV-16 antigen OS=Onchocerca volvulus GN=OV16 PE=2 ... [more]
D1_ONCVO5.487e-1434.27Protein D1 (Fragment) OS=Onchocerca volvulus GN=D1... [more]
D3_ONCVO1.144e-1133.58Protein D3 (Fragment) OS=Onchocerca volvulus GN=D3... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_G09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935601 ID=CK935601; Name=CK935601; organism=Citrus sinensis; type=EST; length=896bp
NCGGCCGGGATCCAACCTACCAACANNNTTTCATCACTTGAATAGTCTTA
CTACTTTTGTAGGCTGTGTGTGTATTTGTTTGTGCTTAGTGTTGTTGAGT
GTTTGTTTGTGTTTAGTGTTGTTGATATGTCTAGCAGGGAGAGAGATCCT
CTTATTGTTGGCCGCGTTGTTGGTGATGTTCTTGACAATTTTACAAGAAC
AATTCCAATGAGGATTACCTATTCAAACAAGGATGTTAATAATGGCCGTG
AGCTCAAACCTTCTGAAGTTCTGAACCAGCCTAGGGCTGAAATTGGTGGT
GATGATCTTAGGACATTTTATACTTTGGTAATGGTTGATCCTGATGCACC
AAGCCCAAGTGACCCCAGCCTTAGGGAGTATTTGCATTGGTTGGTGACTG
ATATTCCAGCAACCACAGGGGCCAGCTTTGGCCAAGAGATTGTGAACTAT
GAAAGCCCTAGGCCAACGATGGGGATTCACAGGTTTGTCTTTGTGTCGTT
CCGGCAACTTGGGAGGCAGACTGTTTATGCACCAGGGTGGCGTCAGAACT
TCAGCACGAGGGATTTTGCTGAGCTTTACAATCTGGGACCTCCGGTGGCC
GCTGTCTACTTCAACTGCCAGAGGGAGAGCGGATCCGGCGGAAGGCCTGT
CAGACGATGATCCATACATGCTTAATTTGATATCAAATTACACACACACA
CACACACACACACACACACTATATATATATATATATATATATCCAAAATT
AAGAGCTAGCTAGTGTTAACATAATTATGTCATGGTTAATCTTCCTCTCT
GGCTTTCTCACATTTTATTGTAACGTACTCTGAAGATGAAGTTAAATACT
TCAAACAGTGAGAAAGGAAGATTGTTGAACTGTGTATACAATTAAT
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