CK935605

Overview
NameCK935605
Unique NameCK935605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935605 vs. ExPASy Swiss-Prot
Match: AMYB_THETU (Thermophilic beta-amylase OS=Thermoanaerobacter thermosulfurogenes PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.584e-19
Identity = 58/159 (36.48%), Postives = 81/159 (50.94%), Query Frame = 1
Query:  334 VFVMMPLDSVTMSNTVNRKKAMDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRMPVQCYSDFMRAFKDKF---KDLL 801
            VFVM PL+ VT  N      A    L  LK+ GV G+  D+WWG VE      ++W  Y    +  +  GLK   +MS H CGGNVGD+V+IP+P WV  + D   ++ Y D+ G  + E +S      P   G    Q Y++F  +F   F   KD++
Sbjct:   40 VFVMGPLEKVTDFN------AFKDQLITLKNNGVYGITTDIWWGYVENAGENQFDWSYYKTYADTVRAAGLKWVPIMSTHACGGNVGDTVNIPIPSWVWTK-DTQDNMQYKDEAGNWDNEAVS------PWYSGL--TQLYNEFYSSFASNFSSYKDII 183          
BLAST of CK935605 vs. ExPASy Swiss-Prot
Match: AMYB_BACCI (Beta-amylase OS=Bacillus circulans PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.802e-16
Identity = 52/156 (33.33%), Postives = 79/156 (50.64%), Query Frame = 1
Query:  334 VFVMMPLDSVTMSNTVNRKKAMDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRMPVQCYSDFMRAFKDKFKDLL 801
            V VM PL  VT  N+   +      L  LK+ GV  +  DVWWG VE      ++W  Y    +  K+ GLK   ++S H+CGGNVGD  +IPLP W+  +   D ++ + D+ G  N E +S     +    G+   + Y+ F + F   +KD++
Sbjct:   44 VSVMGPLAKVTDWNSFKNQ------LTTLKNNGVYAITTDVWWGYVESAGDNQFDWSYYKTYADTVKQAGLKWVPIISTHRCGGNVGDDCNIPLPSWLWSKGSAD-EMQFKDESGYVNNESLSPFWSGV----GKQYDELYASFAQNF-SAYKDMI 187          
BLAST of CK935605 vs. ExPASy Swiss-Prot
Match: AMYB_BACFI (Beta-amylase (Fragment) OS=Bacillus firmus PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.520e-15
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  379 VNRKKAMDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYIS 702
            +N   +    L+ LK+ GV  +  DVWWG VE      ++W  Y    +  K  GLK   ++S H+CGGNVGD  +IPLP W+  +   D ++ + D+ G  N E +S
Sbjct:   52 INDWGSFKKQLQTLKNNGVYAITTDVWWGYVESAGDNQFDWSYYKTYADAVKEAGLKWVPIISTHKCGGNVGDDCNIPLPSWLSSKGSAD-EMQFKDESGYANNEALS 158          
BLAST of CK935605 vs. ExPASy Swiss-Prot
Match: AMYB_PAEPO (Beta/alpha-amylase OS=Paenibacillus polymyxa PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.283e-14
Identity = 39/108 (36.11%), Postives = 57/108 (52.78%), Query Frame = 1
Query:  379 VNRKKAMDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYIS 702
            +N   +    L+ LK+ GV  +  DVWWG VE      ++W  Y       K  GLK   ++S H+CGGNVGD  +IPLP W+  +   D ++ + D+ G  N E +S
Sbjct:   52 INDWGSFKKQLQTLKNNGVYAITTDVWWGYVESAGDNQFDWSYYKTYANAVKEAGLKWVPIISTHKCGGNVGDDCNIPLPSWLSSKGSAD-EMQFKDESGYANSEALS 158          
BLAST of CK935605 vs. ExPASy Swiss-Prot
Match: AMYB_BACCE (Beta-amylase OS=Bacillus cereus GN=spoII PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.048e-12
Identity = 45/156 (28.85%), Postives = 76/156 (48.72%), Query Frame = 1
Query:  337 FVMMPLDSVTMSNTVNRKKAMDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYIS-LGCDTIPVLKGRMPVQCYSDFMRAFKDKFKDLL 801
            ++M PL  +     V   +  +  LR  K  G   + +D WWG +E++    +++       +  K  G+K+  ++S HQCGGNVGD  ++P+P WV  +   D  L +  + G  N E ++ L  D I    G +    Y+ F  A K  +KD++
Sbjct:   44 YLMAPLKKIP---EVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWNQ-KSDDSLYFKSETGTVNKETLNPLASDVIRKEYGEL----YTAFAAAMK-PYKDVI 190          
The following BLAST results are available for this feature:
BLAST of CK935605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
AMYB_THETU8.584e-1936.48Thermophilic beta-amylase OS=Thermoanaerobacter th... [more]
AMYB_BACCI6.802e-1633.33Beta-amylase OS=Bacillus circulans PE=3 SV=1[more]
AMYB_BACFI7.520e-1536.11Beta-amylase (Fragment) OS=Bacillus firmus PE=3 SV... [more]
AMYB_PAEPO1.283e-1436.11Beta/alpha-amylase OS=Paenibacillus polymyxa PE=1 ... [more]
AMYB_BACCE2.048e-1228.85Beta-amylase OS=Bacillus cereus GN=spoII PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_H02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935605 ID=CK935605; Name=CK935605; organism=Citrus sinensis; type=EST; length=829bp
GGGGGTACACTAGCTGGAACACCAATTCAGATGGACACAGGCGTCGTGTC
CGGCGATTCAACGGGGACGGTGAACGCATCGGCGGTGTGGAAACCGGTGT
CAACAGATTTGCGCTGTGCGATCCAAAAACCTGATCTGAAGGACACAATG
TCGCCACCAGTGAGCCCCTGCCGGTCGCCGGTACTGTCGAGCATGCGAGC
AGATCTGTCAGTGGCATGCCGCGCATTCGCGACAGAGTCTCCGACGGCGG
CAGCGGTGACGGAGTTCTCCGAGGAGGTTGGCGGCGAGATGTACAAGCAG
GGCGGCTTGCAAGAAAAGGGGAACGGAGTGCCGGTGTTCGTGATGATGCC
GCTGGACAGCGTGACGATGTCGAATACTGTGAATAGAAAGAAGGCGATGG
ACGCGAGTCTCAGGGCGTTGAAGAGCGCGGGAGTGGAAGGAGTTATGATG
GACGTGTGGTGGGGCCTGGTCGAGAGGGACCAGCCCGGCCATTACAATTG
GGGTGGCTATTCTGACTTGCTCGAAATGGCCAAACGACACGGCCTCAAGG
TTCAGGCCGTCATGTCGTTTCACCAGTGCGGCGGCAACGTCGGTGATTCC
GTCTCTATCCCTTTACCCAAGTGGGTTGTAGAAGAAGTTGACAAAGACCA
AGATCTTGTGTATACTGATCAATGGGGGATGAGGAATTACGAGTACATTT
CACTAGGTTGTGATACCATTCCGGTCCTGAAAGGTCGAATGCCTGTCCAG
TGTTACTCTGACTTCATGCGTGCCTTCAAAGACAAGTTCAAGGACCTTCT
TGGTGACACCATTGTGGNNATCCAAGTGG
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