CK935733

Overview
NameCK935733
Unique NameCK935733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSI (Probable histone H2A.1 OS=Oryza sativa subsp. indica GN=OsI_26380 PE=3 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.126e-33
Identity = 73/120 (60.83%), Postives = 86/120 (71.67%), Query Frame = 1
Query:  103 GRGRSKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAARK 462
            G G +K  K  SRS KAGLQF VGR+ARFLK G+YA+RVG+G+P                  GNAARDNKK RI+PRHIQLAV+NDEE +KLLG  T A+GGV+PNIHQ+LLPKKA + K
Sbjct:    9 GAGAAK--KATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126          
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2A_EUPES (Histone H2A OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.083e-33
Identity = 78/129 (60.47%), Postives = 86/129 (66.67%), Query Frame = 1
Query:   73 MSSEAAATKGG---RGRSKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKA 450
            M + A   KG    +G     KPVSRS KAGLQF VGR+ RFLKKGRYAQRVGSG+P                  GNAARDNKKNRIIPRH+ LAV+NDEE  KLL  VT A+GGVLPNI+  LLPKKA
Sbjct:    1 MDTGAKLKKGAGERKGGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKA 129          
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSJ (Probable histone H2A.3 OS=Oryza sativa subsp. japonica GN=Os08g0427700 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.083e-33
Identity = 72/116 (62.07%), Postives = 83/116 (71.55%), Query Frame = 1
Query:  109 GRSKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAA 456
            G S   K  SRS KAGLQF VGR+ARFLK G+YA+RVG+G+P                  GNAARDNKK RI+PRHIQLAV+NDEE S+LLG+VT ANGGV+PNIH  LLPKKA +
Sbjct:    9 GSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKAGS 124          
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSI (Probable histone H2A.3 OS=Oryza sativa subsp. indica GN=OsI_028288 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.083e-33
Identity = 72/116 (62.07%), Postives = 83/116 (71.55%), Query Frame = 1
Query:  109 GRSKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAA 456
            G S   K  SRS KAGLQF VGR+ARFLK G+YA+RVG+G+P                  GNAARDNKK RI+PRHIQLAV+NDEE S+LLG+VT ANGGV+PNIH  LLPKKA +
Sbjct:    9 GSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKAGS 124          
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2A1_PICST (Histone H2A.1 OS=Pichia stipitis GN=HTA2 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.332e-33
Identity = 77/132 (58.33%), Postives = 89/132 (67.42%), Query Frame = 1
Query:  100 GGRGR--SKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAARKGEIGSVSQE 489
            GG+G+  S +    SRS KAGL F VGRV R L+KG YAQRVGSG+P                  GNAARDNKK+RIIPRH+QLA++NDEE +KLLG VT A GGVLPNIHQNLLPKK+    G+    SQE
Sbjct:    3 GGKGKAGSSEKASTSRSAKAGLTFPVGRVHRLLRKGNYAQRVGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKS----GKSAKASQE 130          
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2A_KLULA (Histone H2A OS=Kluyveromyces lactis GN=HTA1 PE=3 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 9.095e-33
Identity = 72/122 (59.02%), Postives = 84/122 (68.85%), Query Frame = 1
Query:   97 KGGRGRSKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAARK 462
            KGG+  S      SRS KAGL F VGRV R L+KG YAQR+GSG+P                  GNAARDNKK RIIPRH+QLA++ND+E +KLLG+VT A GGVLPNIHQNLLPKK++  K
Sbjct:    4 KGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSSKAK 125          
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2A8_ORYSI (Probable histone H2A.8 OS=Oryza sativa subsp. indica GN=OsI_036919 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.095e-33
Identity = 72/120 (60.00%), Postives = 85/120 (70.83%), Query Frame = 1
Query:  103 GRGRSKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAARK 462
            G G +K  K  SRS K GLQF VGR+ARFLK G+YA+RVG+G+P                  GNAARDNKK RI+PRHIQLAV+NDEE +KLLG  T A+GGV+PNIHQ+LLPKKA + K
Sbjct:    9 GAGAAK--KATSRSSKGGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126          
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2A7_WHEAT (Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 9.095e-33
Identity = 73/120 (60.83%), Postives = 85/120 (70.83%), Query Frame = 1
Query:  103 GRGRSKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAARK 462
            G G +K  K +SRS KAGLQF VGR+ARFLK G+YA+RVG+G+P                  GNAARDNKK RI+PRHIQLAV+NDEE S+LLG VT A+GGV+PNIH  LLPKKA   K
Sbjct:    9 GSGAAK--KAISRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGMVTIASGGVMPNIHNLLLPKKAGGSK 126          
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2A2_DEBHA (Histone H2A.2 OS=Debaryomyces hansenii GN=HTA2 PE=3 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 1.188e-32
Identity = 76/132 (57.58%), Postives = 90/132 (68.18%), Query Frame = 1
Query:  100 GGRGR--SKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAARKGEIGSVSQE 489
            GG+G+  S +    SRS KAGL F VGRV R L+KG YAQRVGSG+P                  GNAARDNKK+RIIPRH+QLA++NDEE +KLLG VT A GGVLPNIHQ+LLP    A+K + G+ SQE
Sbjct:    3 GGKGKAGSSEKASTSRSAKAGLTFPVGRVHRLLRKGNYAQRVGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQSLLP----AKKAKAGNASQE 130          
BLAST of CK935733 vs. ExPASy Swiss-Prot
Match: H2A2_CANAL (Histone H2A.2 OS=Candida albicans GN=HTA2 PE=3 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 1.188e-32
Identity = 75/132 (56.82%), Postives = 90/132 (68.18%), Query Frame = 1
Query:  100 GGRGR--SKDTKPVSRSHKAGLQFLVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTTANGGVLPNIHQNLLPKKAAARKGEIGSVSQE 489
            GG+G+  S +    SRS KAGL F VGRV R L+KG YAQR+GSG+P                  GNAARDNKK+RIIPRH+QLA++NDEE +KLLG VT A GGVLPNIHQ+LLP    A+K + G+ SQE
Sbjct:    3 GGKGKAGSSEKASTSRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQSLLP----AKKAKAGAASQE 130          
The following BLAST results are available for this feature:
BLAST of CK935733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
H2A1_ORYSI3.126e-3360.83Probable histone H2A.1 OS=Oryza sativa subsp. indi... [more]
H2A_EUPES4.083e-3360.47Histone H2A OS=Euphorbia esula PE=2 SV=1[more]
H2A3_ORYSJ4.083e-3362.07Probable histone H2A.3 OS=Oryza sativa subsp. japo... [more]
H2A3_ORYSI4.083e-3362.07Probable histone H2A.3 OS=Oryza sativa subsp. indi... [more]
H2A1_PICST5.332e-3358.33Histone H2A.1 OS=Pichia stipitis GN=HTA2 PE=3 SV=1[more]
H2A_KLULA9.095e-3359.02Histone H2A OS=Kluyveromyces lactis GN=HTA1 PE=3 S... [more]
H2A8_ORYSI9.095e-3360.00Probable histone H2A.8 OS=Oryza sativa subsp. indi... [more]
H2A7_WHEAT9.095e-3360.83Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 S... [more]
H2A2_DEBHA1.188e-3257.58Histone H2A.2 OS=Debaryomyces hansenii GN=HTA2 PE=... [more]
H2A2_CANAL1.188e-3256.82Histone H2A.2 OS=Candida albicans GN=HTA2 PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004552_C11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935733 ID=CK935733; Name=CK935733; organism=Citrus sinensis; type=EST; length=654bp
GGGGATCGCAAACCGCTTCGAATTTATTCAAAACTCTCAATCTTCCTCAA
AAGAAAAACCCATTTCTCAACCATGAGTTCAGAAGCTGCAGCAACCAAGG
GTGGGCGGGGCAGGTCCAAGGACACGAAACCGGTGTCCAGATCCCACAAG
GCCGGTCTCCAGTTCCTGGTTGGCCGTGTCGCTCGCTTCCTCAAGAAAGG
CCGATACGCCCAGCGCGTCGGATCCGGCTCTCCCGTCTATCTTTCCGCCG
TCCTTGAATACCTTGCTGCTGAGGTTTTGGAGTTGGCTGGGAACGCGGCG
AGGGACAACAAGAAGAACAGAATCATTCCAAGGCACATTCAGTTGGCTGT
GAAAAACGACGAGGAGTTTAGCAAACTGCTTGGCTCTGTGACTACCGCTA
ATGGTGGTGTGTTGCCTAACATTCATCAGAACTTGCTGCCGAAGAAAGCT
GCAGCACGGAAGGGCGAAATTGGATCCGTGTCTCAGGAGTTTTAGGGGTT
TAATTAGGGATCTGGAATCTTCGATTTCGGGTTATGTTTATAAGTATGTA
GTGAATTTGGGTTTTCACTTTCATATGTGTAAATCTCATTTTGGATAATT
GAGTAAAAATCCTGGGTTTCTTCGTAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
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