CK935759

Overview
NameCK935759
Unique NameCK935759
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_NOSP7 (Glycine dehydrogenase [decarboxylating] OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=gcvP PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 7.335e-63
Identity = 117/180 (65.00%), Postives = 145/180 (80.56%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLM 540
            LP HPVV+   I    +   +G +AAAPWGSA IL IS+ YIAMMG+ GLT+A+K+AILNANY+AK+LE +YP+L++G NG VAHE I+DLR LK +A IE +DVAKRLMDYGFH PT+SWPV GT+M+EPTESESK+ELDR+CDALI+IR+EIA+IE GK D  +NVLK APH    L+
Sbjct:  750 LPGHPVVT---INDSTQHSHIGAVAAAPWGSASILVISWMYIAMMGADGLTQATKVAILNANYIAKKLESYYPVLYQGKNGLVAHECILDLRSLKKSAAIEIDDVAKRLMDYGFHAPTVSWPVGGTIMVEPTESESKQELDRFCDALIAIRQEIAEIEVGKVDAQDNVLKNAPHTAESLI 926          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_CHICK (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Gallus gallus GN=GLDC PE=1 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 2.134e-62
Identity = 119/174 (68.39%), Postives = 136/174 (78.16%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPH 522
            LP+HPV+    I   + + PLGT++AAPWGS+ ILPIS+ YI  MG+KGL  AS+IAILNANYMAKRLEKHY ILFRGV G VAHEFI+D R  K TA IE  D+AKRL DYGFH PTMSWPV GTLMIEPTESE K ELDR+CDA+ISIR+EIA IE G+ D   N LK +PH
Sbjct:  764 LPTHPVIK---IQTDKDACPLGTVSAAPWGSSAILPISWVYIKTMGAKGLKHASEIAILNANYMAKRLEKHYKILFRGVRGYVAHEFILDTRPFKKTANIEAVDLAKRLQDYGFHAPTMSWPVAGTLMIEPTESEDKGELDRFCDAMISIRQEIADIEEGRMDPQVNPLKMSPH 934          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_ANASP (Glycine dehydrogenase [decarboxylating] OS=Anabaena sp. (strain PCC 7120) GN=gcvP PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 8.966e-61
Identity = 111/174 (63.79%), Postives = 140/174 (80.46%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPH 522
            LP HPV+ +G  P     Q +G +AAAPWGSA IL IS+ YI MMG+ GLT+A+K+AILNANY+AK+L  +YP+L++G NG VAHE I+DLR LK +A IE +D+AKRL+DYGFH PT+SWPV GT+M+EPTESES+ ELDR+C+ALI+IR+EIA IE GK DI +N LK APH
Sbjct:  757 LPGHPVLESGKNP-----QNIGAVAAAPWGSASILVISWMYIVMMGADGLTQATKVAILNANYIAKKLAAYYPVLYKGQNGLVAHECILDLRALKKSANIEIDDIAKRLIDYGFHAPTVSWPVAGTIMVEPTESESQAELDRFCEALIAIRQEIADIEAGKVDIQDNSLKNAPH 925          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_HUMAN (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Homo sapiens GN=GLDC PE=1 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 1.997e-60
Identity = 114/174 (65.52%), Postives = 134/174 (77.01%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPH 522
            LP+HPV+S   +   E + P+GT++AAPWGS+ ILPIS+ YI MMG KGL +A++ AILNANYMAKRLE HY ILFRG  G V HEFI+D R  K +A IE  DVAKRL DYGFH PTMSWPV GTLM+EPTESE K ELDR+CDA+ISIR+EIA IE G+ D   N LK +PH
Sbjct:  780 LPNHPVIS---LKRNEDACPVGTVSAAPWGSSSILPISWAYIKMMGGKGLKQATETAILNANYMAKRLETHYRILFRGARGYVGHEFILDTRPFKKSANIEAVDVAKRLQDYGFHAPTMSWPVAGTLMVEPTESEDKAELDRFCDAMISIRQEIADIEEGRIDPRVNPLKMSPH 950          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_THEEB (Glycine dehydrogenase [decarboxylating] OS=Thermosynechococcus elongatus (strain BP-1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 2.884e-59
Identity = 108/158 (68.35%), Postives = 130/158 (82.28%), Query Frame = 1
Query:   64 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLL 537
            G + AAPWGSA ILPIS+ YI +MG  GLT A+ IAILNANY+AKRLE +YP+L++G +G VAHE I+DLR LK +AGIE ED+AKRLMDYGFH PT+SWPVPGTLMIEPTESE+K ELDR+C+A+I+IR EIA+IE G +D   N LK APHP  +L
Sbjct:  745 GPVTAAPWGSASILPISWMYITLMGGVGLTRATAIAILNANYIAKRLEPYYPVLYKGAHGLVAHECILDLRPLKKSAGIEVEDIAKRLMDYGFHAPTVSWPVPGTLMIEPTESETKAELDRFCEAMIAIRSEIAEIEAGVSDRQQNPLKNAPHPALML 902          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_PROMM (Glycine dehydrogenase [decarboxylating] OS=Prochlorococcus marinus (strain MIT 9313) GN=gcvP PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 8.392e-59
Identity = 108/174 (62.07%), Postives = 137/174 (78.74%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPH 522
            LP HP+ + GG       Q +G I+AAPWGSA ILPIS+ Y+ MMG++GL +AS +A+L+ANY+A RL  HYP+LFRG  G VAHE I+DLR LK +AG+E +D+AKRLMDYGFH PT+SWPV GT+M+EPTESES EEL+R+CDA+I+IREE A IE+G+ D  NN L+ APH
Sbjct:  727 LPGHPLAACGG------EQGIGAISAAPWGSAGILPISWMYLRMMGAEGLRQASAVALLSANYLAHRLHPHYPVLFRGQAGLVAHECILDLRPLKRSAGLEVDDIAKRLMDYGFHAPTVSWPVAGTVMVEPTESESLEELNRFCDAMIAIREETAAIESGQIDPQNNPLRRAPH 894          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_PROM3 (Glycine dehydrogenase [decarboxylating] OS=Prochlorococcus marinus (strain MIT 9303) GN=gcvP PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 8.392e-59
Identity = 108/174 (62.07%), Postives = 137/174 (78.74%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPH 522
            LP HP+ + GG       Q +G I+AAPWGSA ILPIS+ Y+ MMG++GL +AS +A+L+ANY+A RL  HYP+LFRG  G VAHE I+DLR LK +AG+E +D+AKRLMDYGFH PT+SWPV GT+M+EPTESES EEL+R+CDA+I+IREE A IE+G+ D  NN L+ APH
Sbjct:  747 LPGHPLAACGG------EQGIGAISAAPWGSAGILPISWMYLRMMGAEGLRQASAVALLSANYLAHRLHPHYPVLFRGQAGLVAHECILDLRPLKRSAGLEVDDIAKRLMDYGFHAPTVSWPVAGTVMVEPTESESLEELNRFCDAMIAIREETAAIESGQIDPQNNPLRRAPH 914          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_DICDI (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Dictyostelium discoideum GN=gcvP PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.212e-57
Identity = 110/180 (61.11%), Postives = 133/180 (73.89%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLM 540
            LP H VV   G       + +  ++A PWGS+ ILPI+Y Y+ +MG +GL +A+++AILNANYMA RL+ HY IL+ G +G VAHEFI+DLR  K +AGIE EDVAKRL D  FHGPTMSWPVP TLMIEPTESESK ELDR CDALI IREEI +IE GKAD  NNVL  +PH   +++
Sbjct:  768 LPGHSVVKGVG-----GERAMSAVSAGPWGSSSILPITYVYLKLMGGQGLKKATQVAILNANYMASRLKDHYKILYTGSHGLVAHEFIIDLRMFKESAGIEAEDVAKRLQDMNFHGPTMSWPVPNTLMIEPTESESKYELDRLCDALILIREEIREIETGKADRKNNVLVNSPHTEKVIV 942          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_PROMT (Glycine dehydrogenase [decarboxylating] OS=Prochlorococcus marinus (strain NATL2A) GN=gcvP PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.026e-56
Identity = 111/174 (63.79%), Postives = 133/174 (76.44%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPH 522
            LP H ++  GG  A      +  ++AAP+GSA ILPIS+ YI MMGS GL +AS IAIL+ANY+AKRL+ +YP+LF+  NG VAHE I+DLR LK+  GIE EDVAKRLMDYGFH PT+SWPV GTLM+EPTESES  ELDR+CDA+I IREEI QI+ GK D  NN LK +PH
Sbjct:  738 LPGHSIIKCGGQKA------ISAVSAAPFGSAGILPISWMYIRMMGSDGLRKASSIAILSANYLAKRLDPYYPVLFKDPNGLVAHECILDLRPLKSQLGIEVEDVAKRLMDYGFHAPTISWPVAGTLMVEPTESESLPELDRFCDAMIGIREEIEQIKLGKIDPINNPLKQSPH 905          
BLAST of CK935759 vs. ExPASy Swiss-Prot
Match: GCSP_PROM1 (Glycine dehydrogenase [decarboxylating] OS=Prochlorococcus marinus (strain NATL1A) GN=gcvP PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.026e-56
Identity = 111/174 (63.79%), Postives = 133/174 (76.44%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPH 522
            LP H ++  GG  A      +  ++AAP+GSA ILPIS+ YI MMGS GL +AS IAIL+ANY+AKRL+ +YP+LF+  NG VAHE I+DLR LK+  GIE EDVAKRLMDYGFH PT+SWPV GTLM+EPTESES  ELDR+CDA+I IREEI QI+ GK D  NN LK +PH
Sbjct:  738 LPGHSIIKCGGEKA------ISAVSAAPFGSAGILPISWMYIRMMGSDGLRKASSIAILSANYLAKRLDPYYPVLFKDPNGLVAHECILDLRPLKSQLGIEVEDVAKRLMDYGFHAPTISWPVAGTLMVEPTESESLPELDRFCDAMIGIREEIEQIKLGKIDPINNPLKQSPH 905          
The following BLAST results are available for this feature:
BLAST of CK935759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
GCSP_NOSP77.335e-6365.00Glycine dehydrogenase [decarboxylating] OS=Nostoc ... [more]
GCSP_CHICK2.134e-6268.39Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_ANASP8.966e-6163.79Glycine dehydrogenase [decarboxylating] OS=Anabaen... [more]
GCSP_HUMAN1.997e-6065.52Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_THEEB2.884e-5968.35Glycine dehydrogenase [decarboxylating] OS=Thermos... [more]
GCSP_PROMM8.392e-5962.07Glycine dehydrogenase [decarboxylating] OS=Prochlo... [more]
GCSP_PROM38.392e-5962.07Glycine dehydrogenase [decarboxylating] OS=Prochlo... [more]
GCSP_DICDI1.212e-5761.11Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_PROMT1.026e-5663.79Glycine dehydrogenase [decarboxylating] OS=Prochlo... [more]
GCSP_PROM11.026e-5663.79Glycine dehydrogenase [decarboxylating] OS=Prochlo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004552_A06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935759 ID=CK935759; Name=CK935759; organism=Citrus sinensis; type=EST; length=541bp
CTGCCTTCACATCCTGTGGTATCCACAGGTGGTATTCCTGCCCCTGAAAA
GTCTCAACCCCTGGGCACAATTGCAGCTGCACCCTGGGGCTCTGCACTTA
TCCTGCCAATATCATATACGTACATAGCTATGATGGGTTCTAAAGGACTC
ACTGAGGCTTCAAAGATAGCTATTCTGAATGCAAACTACATGGCAAAACG
TTTGGAGAAACATTACCCCATCCTTTTCCGTGGTGTCAATGGAACAGTTG
CTCATGAATTCATTGTGGACTTAAGAGGCTTGAAGAATACTGCCGGGATA
GAGCCCGAAGATGTTGCCAAACGTCTTATGGATTATGGATTCCATGGACC
AACAATGTCATGGCCTGTTCCAGGCACACTTATGATTGAACCAACTGAAA
GTGAAAGCAAGGAAGAGTTGGACAGGTATTGTGATGCTCTCATCTCCATC
AGAGAAGAAATTGCACAGATTGAAAATGGGAAGGCAGATATCCACAACAA
TGTCCTGAAGGGGGCGCCTCATCCACCATCTTTGCTCATGG
back to top