CK935861

Overview
NameCK935861
Unique NameCK935861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935861 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.143e-33
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 2
Query:   53 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 280
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CK935861 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.894e-32
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 2
Query:   53 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 280
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CK935861 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.541e-28
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 2
Query:   53 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 280
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
BLAST of CK935861 vs. ExPASy Swiss-Prot
Match: RS27A_SOLTU (40S ribosomal protein S27a OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.757e-27
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 2
Query:  350 LAVLQFYKVDDSGKVQRLRKECPNAECGTGTFMANHFDRHYCGKCGLTYVYQKAGGD 520
            LAVLQFYKVDD+GKVQRLRKECPNAECG GTFMANHFDRHYCGKCGLTYVY KAGGD
Sbjct:   24 LAVLQFYKVDDTGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 80          
BLAST of CK935861 vs. ExPASy Swiss-Prot
Match: RS27A_SOLLC (40S ribosomal protein S27a OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.757e-27
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 2
Query:  350 LAVLQFYKVDDSGKVQRLRKECPNAECGTGTFMANHFDRHYCGKCGLTYVYQKAGGD 520
            LAVLQFYKVDD+GKVQRLRKECPNAECG GTFMANHFDRHYCGKCGLTYVY KAGGD
Sbjct:   24 LAVLQFYKVDDTGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 80          
BLAST of CK935861 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.295e-27
Identity = 58/76 (76.32%), Postives = 68/76 (89.47%), Query Frame = 2
Query:   53 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 280
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
BLAST of CK935861 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 8.721e-27
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 2
Query:   86 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 274
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          
BLAST of CK935861 vs. ExPASy Swiss-Prot
Match: RS27A_LUPAL (40S ribosomal protein S27a OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.664e-25
Identity = 51/54 (94.44%), Postives = 51/54 (94.44%), Query Frame = 2
Query:  350 LAVLQFYKVDDSGKVQRLRKECPNAECGTGTFMANHFDRHYCGKCGLTYVYQKA 511
            LAVLQFYKVDDSGKVQRLRKECPN ECG GTFMANHFDRHYCGKCG TYVYQKA
Sbjct:   24 LAVLQFYKVDDSGKVQRLRKECPNTECGAGTFMANHFDRHYCGKCGKTYVYQKA 77          
BLAST of CK935861 vs. ExPASy Swiss-Prot
Match: R27AB_ARATH (40S ribosomal protein S27a-2 OS=Arabidopsis thaliana GN=UBQ6 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.375e-24
Identity = 50/55 (90.91%), Postives = 51/55 (92.73%), Query Frame = 2
Query:  350 LAVLQFYKVDDSGKVQRLRKECPNAECGTGTFMANHFDRHYCGKCGLTYVYQKAG 514
            LAVLQFYKVD SGKVQRLRKECPNA CG GTFMA+HFDRHYCGKCGLTYVYQK G
Sbjct:   24 LAVLQFYKVDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 78          
BLAST of CK935861 vs. ExPASy Swiss-Prot
Match: R27AC_ARATH (40S ribosomal protein S27a-3 OS=Arabidopsis thaliana GN=UBQ5 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.102e-24
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 2
Query:  350 LAVLQFYKVDDSGKVQRLRKECPNAECGTGTFMANHFDRHYCGKCGLTYVYQKAG 514
            LAVLQFYK+D SGKVQRLRKECPNA CG GTFMA+HFDRHYCGKCGLTYVYQK G
Sbjct:   24 LAVLQFYKIDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 78          
The following BLAST results are available for this feature:
BLAST of CK935861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
UBIQ_LEIMA2.143e-3393.42Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_LEITA6.894e-3290.79Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIL_NPVOP3.541e-2880.26Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
RS27A_SOLTU1.757e-2794.7440S ribosomal protein S27a OS=Solanum tuberosum GN... [more]
RS27A_SOLLC1.757e-2794.7440S ribosomal protein S27a OS=Solanum lycopersicum... [more]
UBIL_NPVAC2.295e-2776.32Ubiquitin-like protein OS=Autographa californica n... [more]
UBIQ_LUMTE8.721e-2795.24Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
RS27A_LUPAL3.664e-2594.4440S ribosomal protein S27a OS=Lupinus albus PE=3 S... [more]
R27AB_ARATH2.375e-2490.9140S ribosomal protein S27a-2 OS=Arabidopsis thalia... [more]
R27AC_ARATH3.102e-2489.0940S ribosomal protein S27a-3 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004389_H06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIIF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935861 ID=CK935861; Name=CK935861; organism=Citrus sinensis; type=EST; length=718bp
GGGGATCCTTTCATTTCACTGAAATTTGCTGGGTCTCTCCTCATCTGCAG
CCATGCAGATCTTCGTGAAAACCCTAACGGGAAAGACCATAACCCTAGAG
GTCGAATCATCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAA
GGAGGGGATTCCACCGGACCAGCAGCGTCTCATCTTCGCCGGAAAGCAGC
TCGAGGACGGCAGAACCCTAGCCGACTACAACATCCAAAAGGAGTCAACA
CTCCACCTCGTCCTCCGTCTCCGTGGTGGCGCGAAGAAGCGTAAGAAGAA
GACCTACACCAAGCCGAAAAAGATCAAGCACAAGAAGAAGAAGGTCAAGC
TCGCCGTCTTGCAGTTTTACAAGGTCGATGATTCTGGAAAGGTCCAGAGG
CTGAGGAAGGAGTGTCCGAATGCTGAGTGTGGAACCGGCACCTTCATGGC
TAACCACTTTGACAGGCACTACTGCGGCAAGTGTGGACTCACCTATGTTT
ACCAGAAGGCTGGCGGTGATTGATCGAGATTAGGTGGTTGTTTTGCTATT
TTTAATTAGTATTAATTACTATGGTTTTTGTGGTTCAAAAATTATGACTC
TTTCGTAATTTTGTTTGACTATATACTTGTTTGCTTGAGCGTTTTAATTA
AATGGTTATCTGTTTTAAATTTTAATTTATGAATCTTTCAAAAAAAAGAA
AAAAAAAAAAAAAAAAAA
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