CK935871

Overview
NameCK935871
Unique NameCK935871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935871 vs. ExPASy Swiss-Prot
Match: RL24_MOUSE (60S ribosomal protein L24 OS=Mus musculus GN=Rpl24 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.107e-18
Identity = 54/158 (34.18%), Postives = 89/158 (56.33%), Query Frame = 3
Query:   75 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKRHKKDIAAEAVKKKRRSTKKPYSRSIVGATL-EVIQKRG-----LKSLKFEMLLVRLHFVKLRRGSRRPKMKRGPRKLR*HPSQRL--KARVACPRVPLRR 524
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L +++ KR       K+ + + +       K ++ S++  M       +  P Q++    +V+ PRV  +R
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK-FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR 157          
BLAST of CK935871 vs. ExPASy Swiss-Prot
Match: RL24_MACFA (60S ribosomal protein L24 OS=Macaca fascicularis GN=RPL24 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.107e-18
Identity = 54/158 (34.18%), Postives = 89/158 (56.33%), Query Frame = 3
Query:   75 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKRHKKDIAAEAVKKKRRSTKKPYSRSIVGATL-EVIQKRG-----LKSLKFEMLLVRLHFVKLRRGSRRPKMKRGPRKLR*HPSQRL--KARVACPRVPLRR 524
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L +++ KR       K+ + + +       K ++ S++  M       +  P Q++    +V+ PRV  +R
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK-FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR 157          
BLAST of CK935871 vs. ExPASy Swiss-Prot
Match: RL24_HUMAN (60S ribosomal protein L24 OS=Homo sapiens GN=RPL24 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.107e-18
Identity = 54/158 (34.18%), Postives = 89/158 (56.33%), Query Frame = 3
Query:   75 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKRHKKDIAAEAVKKKRRSTKKPYSRSIVGATL-EVIQKRG-----LKSLKFEMLLVRLHFVKLRRGSRRPKMKRGPRKLR*HPSQRL--KARVACPRVPLRR 524
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L +++ KR       K+ + + +       K ++ S++  M       +  P Q++    +V+ PRV  +R
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK-FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR 157          
BLAST of CK935871 vs. ExPASy Swiss-Prot
Match: RL24_FELCA (60S ribosomal protein L24 OS=Felis catus GN=RPL24 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.107e-18
Identity = 54/158 (34.18%), Postives = 89/158 (56.33%), Query Frame = 3
Query:   75 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKRHKKDIAAEAVKKKRRSTKKPYSRSIVGATL-EVIQKRG-----LKSLKFEMLLVRLHFVKLRRGSRRPKMKRGPRKLR*HPSQRL--KARVACPRVPLRR 524
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L +++ KR       K+ + + +       K ++ S++  M       +  P Q++    +V+ PRV  +R
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK-FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR 157          
BLAST of CK935871 vs. ExPASy Swiss-Prot
Match: RL24_BOVIN (60S ribosomal protein L24 OS=Bos taurus GN=RPL24 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.107e-18
Identity = 54/158 (34.18%), Postives = 89/158 (56.33%), Query Frame = 3
Query:   75 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKRHKKDIAAEAVKKKRRSTKKPYSRSIVGATL-EVIQKRG-----LKSLKFEMLLVRLHFVKLRRGSRRPKMKRGPRKLR*HPSQRL--KARVACPRVPLRR 524
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L +++ KR       K+ + + +       K ++ S++  M       +  P Q++    +V+ PRV  +R
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK-FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR 157          
BLAST of CK935871 vs. ExPASy Swiss-Prot
Match: RL24_YARLI (60S ribosomal protein L24 OS=Yarrowia lipolytica GN=RPL24 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.838e-18
Identity = 44/94 (46.81%), Postives = 62/94 (65.96%), Query Frame = 3
Query:   75 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKRHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKR 356
            +K EL  FSG KIYPG+G  F+R DS++F F +SK    F  R  P ++ WT +YR++HKK I  E  KK+ R + K   R IVGA+L+VI+++
Sbjct:    1 MKIELDSFSGNKIYPGRGTLFVRGDSKIFRFYSSKTASLFKQRKNPRRIAWTVLYRRKHKKGITEEVSKKRSRKSVKAV-RGIVGASLDVIKEK 93          

HSP 2 Score: 22.7126 bits (47), Expect = 2.838e-18
Identity = 10/24 (41.67%), Postives = 13/24 (54.17%), Query Frame = 2
Query:  350 EERTEKPEVRDAAREAALREIKER 421
            E+R  +PE R+A R       KER
Sbjct:   92 EKRNARPETRNATRAKHAEAAKER 115          
BLAST of CK935871 vs. ExPASy Swiss-Prot
Match: RL24_DROME (60S ribosomal protein L24 OS=Drosophila melanogaster GN=RpL24 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.207e-18
Identity = 45/98 (45.92%), Postives = 66/98 (67.35%), Query Frame = 3
Query:   75 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKRHKKDIAAEAVKKKRRSTKKPYSRSIVGATL-EVIQKRGLK 365
            +K  LC FSG KIYPG G   ++ D + F F + KC+R +  +  P K+TWT +YR++H+K I  EA KK+ R T+K + R+IVGA+L E++ KR +K
Sbjct:    1 MKIGLCAFSGYKIYPGHGKTMVKIDGKSFTFLDKKCERSYLMKRNPRKVTWTVLYRRKHRKGIEEEASKKRTRRTQK-FQRAIVGASLAEILAKRNMK 97          
BLAST of CK935871 vs. ExPASy Swiss-Prot
Match: RL24_DICDI (60S ribosomal protein L24 OS=Dictyostelium discoideum GN=rpl24 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.224e-17
Identity = 45/128 (35.16%), Postives = 74/128 (57.81%), Query Frame = 3
Query:   75 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKRHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRGLKSLKFEMLLVRLHFVKLRRGSRRPKMKRGPRK 458
            +KT LC +S  KIYP +G++F+R DS+VF F N+K +  F  ++ P  + W+ +YR+ +K      + KKK R TKK   R+IVGA+LEVIQ++  +  + +         +++   +    K  P+K
Sbjct:    1 MKTSLCNYSEFKIYPARGMKFVRGDSKVFHFINTKVESLFFRKINPRDIRWSMVYRRIYKNTTTDVSAKKKARKTKK-VERNIVGASLEVIQQKRAQKPEVKQAAAEQAKREIKEKKKAAAKKAAPKK 127          
BLAST of CK935871 vs. ExPASy Swiss-Prot
Match: RL24_SPOFR (60S ribosomal protein L24 OS=Spodoptera frugiperda GN=RpL24 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.309e-16
Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 3
Query:   75 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKRHKKDIAAEAVKKKRRSTKKPYSRSIVGATL-EVIQKRGLK 365
            +K  LC +SG KIYPG G   ++ D + F F NSKC+     R  P K+TWT +YR++ KK    E  KK+ R T+K Y R+IVGA+L +++ KR +K
Sbjct:    1 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQTKKRTRRTQK-YQRAIVGASLSDIMAKRNMK 97          
BLAST of CK935871 vs. ExPASy Swiss-Prot
Match: RL24_PLUXY (60S ribosomal protein L24 OS=Plutella xylostella GN=RpL24 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.143e-16
Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 3
Query:   75 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKRHKKDIAAEAVKKKRRSTKKPYSRSIVGATL-EVIQKRGLK 365
            +K  LC +SG KIYPG G   ++ D + F F NSKC+     R  P K+TWT +YR++ KK    E  KK+ R T+K Y R+IVGA+L +++ KR +K
Sbjct:    1 MKIGLCAYSGYKIYPGHGKTMVKVDGKNFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQAKKRTRRTQK-YQRAIVGASLSDIMAKRNMK 97          
The following BLAST results are available for this feature:
BLAST of CK935871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL24_MOUSE1.107e-1834.1860S ribosomal protein L24 OS=Mus musculus GN=Rpl24... [more]
RL24_MACFA1.107e-1834.1860S ribosomal protein L24 OS=Macaca fascicularis G... [more]
RL24_HUMAN1.107e-1834.1860S ribosomal protein L24 OS=Homo sapiens GN=RPL24... [more]
RL24_FELCA1.107e-1834.1860S ribosomal protein L24 OS=Felis catus GN=RPL24 ... [more]
RL24_BOVIN1.107e-1834.1860S ribosomal protein L24 OS=Bos taurus GN=RPL24 P... [more]
RL24_YARLI2.838e-1846.8160S ribosomal protein L24 OS=Yarrowia lipolytica G... [more]
RL24_DROME4.207e-1845.9260S ribosomal protein L24 OS=Drosophila melanogast... [more]
RL24_DICDI1.224e-1735.1660S ribosomal protein L24 OS=Dictyostelium discoid... [more]
RL24_SPOFR2.309e-1644.9060S ribosomal protein L24 OS=Spodoptera frugiperda... [more]
RL24_PLUXY5.143e-1644.9060S ribosomal protein L24 OS=Plutella xylostella G... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004389_F04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIIF_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935871 ID=CK935871; Name=CK935871; organism=Citrus sinensis; type=EST; length=825bp
GGGGATTGTGGATGCTTGGGTTTTAGGGTTTCTGAGGTAGCTGTGCCGCG
CAATCGACATCAGAAACCATGGTTCTCAAGACTGAACTGTGCCGCTTTAG
CGGTGCCAAGATTTATCCTGGCAAGGGTATCAGATTCATTCGCTCTGATT
CCCAGGTTTTCCTCTTTGCCAATTCAAAATGCAAGAGGTACTTCCACAAC
CGCTTGAAGCCATCAAAGCTTACATGGACTTCCATGTACAGGAAACGACA
CAAGAAGGATATTGCTGCTGAGGCTGTAAAGAAGAAGCGCCGCTCCACAA
AGAAGCCATATTCAAGGTCTATTGTCGGTGCAACCTTGGAAGTCATACAG
AAGAGAGGACTGAAAAGCCTGAAGTTCGAGATGCTGCTCGTGAGGCTGCA
CTTCGTGAAATTAAGGAGAGGATCAAGAAGACCAAAGATGAAAAGAGGGC
CAAGAAAGCTGAGGTGACATCCAAGTCAAAGACTCAAAGCAAGGGTAGCA
TGCCCAAGGGTGCCGCTCCGAAGGGCCCCAAGCTTGGTGGTGGTGGTGGA
AAACGGTGAAGTGCTTCGTCTCTTCATTTCTTCCTGACTACTATCTTAAA
CAATTAATATATTTATTCCATATTTTGTGAATGGATTGGTCAATACTTGA
GGGCAGATCTGTTAGCATGTTTCTTCAAAATTTTGTTTTGCGGGTCCAAA
TCAACTTCTGTTCACTTAAATCTTAGTTTTCCAAATCATATTCTGTTGGC
TGTTTGAGTAGTAGCCTAATGGTAGTTTTTTGTTTTTGTGTTTTCCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
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