CK935873

Overview
NameCK935873
Unique NameCK935873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935873 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.529e-55
Identity = 104/107 (97.20%), Postives = 106/107 (99.07%), Query Frame = 2
Query:  524 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA 844
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA 256          
BLAST of CK935873 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.607e-55
Identity = 103/107 (96.26%), Postives = 106/107 (99.07%), Query Frame = 2
Query:  524 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA 844
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWA 258          
BLAST of CK935873 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.607e-55
Identity = 103/107 (96.26%), Postives = 106/107 (99.07%), Query Frame = 2
Query:  524 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA 844
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWA 258          
BLAST of CK935873 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.405e-55
Identity = 103/107 (96.26%), Postives = 106/107 (99.07%), Query Frame = 2
Query:  524 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA 844
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 107          
BLAST of CK935873 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.883e-54
Identity = 127/245 (51.84%), Postives = 150/245 (61.22%), Query Frame = 2
Query:  134 LAPSGNELSNGGRISMRKTA---SKSVSSGSP----WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 835
            LA S +        S +K A   SK+VS  S     WYGPDR  +L        E P YL GE  GDYG+D  GL   PE FAK +  E+IH RWAMLGA G + PE L + G   G EAVWFK GA +     L+Y G    I+   +LA+ A +VVL+G  E YRI  G   +  D L+PGG FDPLGLA DPE  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:   26 LASSPSTFKTVALFSKKKPAPAKSKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VLAVVA-EVVLLGGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of CK935873 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.440e-53
Identity = 103/115 (89.57%), Postives = 106/115 (92.17%), Query Frame = 2
Query:  503 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA 844
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPL    DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA 115          
BLAST of CK935873 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.677e-35
Identity = 98/243 (40.33%), Postives = 125/243 (51.44%), Query Frame = 2
Query:  116 VGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 835
            VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + +   E  R       +     YPGG+FDPLG + DP  F ELK+KEIKNGRLAM +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTMEK---DPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
BLAST of CK935873 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.148e-33
Identity = 88/194 (45.36%), Postives = 110/194 (56.70%), Query Frame = 2
Query:  263 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 835
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + +  VE  R       +     YPGG+FDPLG + DP  F ELKVKEIKNGRLA+ ++ GF V Q+   G GPLENLA HLADP +NN
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQRSMEK---DSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          
BLAST of CK935873 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.392e-32
Identity = 73/107 (68.22%), Postives = 82/107 (76.64%), Query Frame = 2
Query:  524 SLIHAQSILAIWACQVVLMGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 835
            +LIHA+S+LAI A QV+LMGAVEGYR    A G  GE  D LYPGG FDPLGLADDP+ F ELKVKEIKNGRLAM  M GF+ QAIVTG+GP+EN   HL DP  +N
Sbjct:    4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHN 110          
BLAST of CK935873 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.101e-32
Identity = 85/206 (41.26%), Postives = 113/206 (54.85%), Query Frame = 2
Query:  230 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 823
            PDR  +   F G  PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG  +  P    EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
The following BLAST results are available for this feature:
BLAST of CK935873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
CB2A_SOLLC1.529e-5597.20Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2F_SOLLC2.607e-5596.26Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC2.607e-5596.26Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC3.405e-5596.26Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB26_ARATH2.883e-5451.84Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB21_RAPSA2.440e-5389.57Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB121_HORVU6.677e-3540.33Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC2.148e-3345.36Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB21_EUGGR1.392e-3268.22Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB12_SOLLC3.101e-3241.26Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004389_F06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIIF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935873 ID=CK935873; Name=CK935873; organism=Citrus sinensis; type=EST; length=845bp
GGGATCACAACCAACAGCTTCTCTTGCTTACACAGCTTCTCTTGCTTACC
CAGCTTCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCAACAATGGCT
CTCTCCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAA
TGAGCTAAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGCGAGCAAGT
CTGTTTCTTCAGGTAGCCCGTGGTACGGCCCAGACAGAGTCAAGTACTTG
GGCCCATTCTCTGGCGAGCCCCCAAGCTACTTGACCGGTGAGTTCCCTGG
CGACTACGGTTGGGACACAGCCGGGCTTTCAGCTGACCCAGAAACCTTTG
CCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGA
GCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTT
CGGTGAGGCCGTGTGGTTCAAGGCGGGAGCCCAGATCTTCAGCGAGGGCG
GGCTAGACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATCTTG
GCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAG
AATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTG
GCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAG
CTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTT
TGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACT
TGGCCGACCACTTGGCCGACCCTGTCAACAACAATGCCTGGGCCT
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