CK935874

Overview
NameCK935874
Unique NameCK935874
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: CAIE_SALTI (Carnitine operon protein caiE OS=Salmonella typhi GN=caiE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.678e-14
Identity = 43/145 (29.66%), Postives = 79/145 (54.48%), Query Frame = 1 
Query:  247 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 681
            +P V  DA+V P+ VL G V V  G  + P + LRGD  ++ +   SN+Q+ C++H   ++      +T +     IG    L  C +  + ++G +S++M+G+++   +I+ A S +  G +    +L  G+PAR +R +T +E
Sbjct:   10 IPVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQE 148
[Close]
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: CAIE_SALSV (Carnitine operon protein caiE OS=Salmonella schwarzengrund (strain CVM19633) GN=caiE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.678e-14
Identity = 43/145 (29.66%), Postives = 79/145 (54.48%), Query Frame = 1 
Query:  247 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 681
            +P V  DA+V P+ VL G V V  G  + P + LRGD  ++ +   SN+Q+ C++H   ++      +T +     IG    L  C +  + ++G +S++M+G+++   +I+ A S +  G +    +L  G+PAR +R +T +E
Sbjct:   10 IPVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQE 148
[Close]
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: CAIE_SALPK (Carnitine operon protein caiE OS=Salmonella paratyphi A (strain AKU_12601) GN=caiE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.678e-14
Identity = 43/145 (29.66%), Postives = 79/145 (54.48%), Query Frame = 1 
Query:  247 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 681
            +P V  DA+V P+ VL G V V  G  + P + LRGD  ++ +   SN+Q+ C++H   ++      +T +     IG    L  C +  + ++G +S++M+G+++   +I+ A S +  G +    +L  G+PAR +R +T +E
Sbjct:   10 IPVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQE 148
[Close]
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: CAIE_SALPC (Carnitine operon protein caiE OS=Salmonella paratyphi C (strain RKS4594) GN=caiE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.678e-14
Identity = 43/145 (29.66%), Postives = 79/145 (54.48%), Query Frame = 1 
Query:  247 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 681
            +P V  DA+V P+ VL G V V  G  + P + LRGD  ++ +   SN+Q+ C++H   ++      +T +     IG    L  C +  + ++G +S++M+G+++   +I+ A S +  G +    +L  G+PAR +R +T +E
Sbjct:   10 IPVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQE 148
[Close]
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: CAIE_SALPA (Carnitine operon protein caiE OS=Salmonella paratyphi A GN=caiE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.678e-14
Identity = 43/145 (29.66%), Postives = 79/145 (54.48%), Query Frame = 1 
Query:  247 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 681
            +P V  DA+V P+ VL G V V  G  + P + LRGD  ++ +   SN+Q+ C++H   ++      +T +     IG    L  C +  + ++G +S++M+G+++   +I+ A S +  G +    +L  G+PAR +R +T +E
Sbjct:   10 IPVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQE 148
[Close]
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: CAIE_SALNS (Carnitine operon protein caiE OS=Salmonella newport (strain SL254) GN=caiE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.678e-14
Identity = 43/145 (29.66%), Postives = 79/145 (54.48%), Query Frame = 1 
Query:  247 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 681
            +P V  DA+V P+ VL G V V  G  + P + LRGD  ++ +   SN+Q+ C++H   ++      +T +     IG    L  C +  + ++G +S++M+G+++   +I+ A S +  G +    +L  G+PAR +R +T +E
Sbjct:   10 IPVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQE 148
[Close]
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: CAIE_SALHS (Carnitine operon protein caiE OS=Salmonella heidelberg (strain SL476) GN=caiE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.678e-14
Identity = 43/145 (29.66%), Postives = 79/145 (54.48%), Query Frame = 1 
Query:  247 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 681
            +P V  DA+V P+ VL G V V  G  + P + LRGD  ++ +   SN+Q+ C++H   ++      +T +     IG    L  C +  + ++G +S++M+G+++   +I+ A S +  G +    +L  G+PAR +R +T +E
Sbjct:   10 IPVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQE 148
[Close]
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: CAIE_SALG2 (Carnitine operon protein caiE OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=caiE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.678e-14
Identity = 43/145 (29.66%), Postives = 79/145 (54.48%), Query Frame = 1 
Query:  247 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 681
            +P V  DA+V P+ VL G V V  G  + P + LRGD  ++ +   SN+Q+ C++H   ++      +T +     IG    L  C +  + ++G +S++M+G+++   +I+ A S +  G +    +L  G+PAR +R +T +E
Sbjct:   10 IPVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQE 148
[Close]
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: CAIE_SALEP (Carnitine operon protein caiE OS=Salmonella enteritidis PT4 (strain P125109) GN=caiE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.678e-14
Identity = 43/145 (29.66%), Postives = 79/145 (54.48%), Query Frame = 1 
Query:  247 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 681
            +P V  DA+V P+ VL G V V  G  + P + LRGD  ++ +   SN+Q+ C++H   ++      +T +     IG    L  C +  + ++G +S++M+G+++   +I+ A S +  G +    +L  G+PAR +R +T +E
Sbjct:   10 IPVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQE 148
[Close]
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: CAIE_SALDC (Carnitine operon protein caiE OS=Salmonella dublin (strain CT_02021853) GN=caiE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.678e-14
Identity = 43/145 (29.66%), Postives = 79/145 (54.48%), Query Frame = 1 
Query:  247 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 681
            +P V  DA+V P+ VL G V V  G  + P + LRGD  ++ +   SN+Q+ C++H   ++      +T +     IG    L  C +  + ++G +S++M+G+++   +I+ A S +  G +    +L  G+PAR +R +T +E
Sbjct:   10 IPVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQE 148
The following BLAST results are available for this feature:
BLAST of CK935874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
CAIE_SALTI9.678e-1429.66Carnitine operon protein caiE OS=Salmonella typhi ... [more]
CAIE_SALSV9.678e-1429.66Carnitine operon protein caiE OS=Salmonella schwar... [more]
CAIE_SALPK9.678e-1429.66Carnitine operon protein caiE OS=Salmonella paraty... [more]
CAIE_SALPC9.678e-1429.66Carnitine operon protein caiE OS=Salmonella paraty... [more]
CAIE_SALPA9.678e-1429.66Carnitine operon protein caiE OS=Salmonella paraty... [more]
CAIE_SALNS9.678e-1429.66Carnitine operon protein caiE OS=Salmonella newpor... [more]
CAIE_SALHS9.678e-1429.66Carnitine operon protein caiE OS=Salmonella heidel... [more]
CAIE_SALG29.678e-1429.66Carnitine operon protein caiE OS=Salmonella gallin... [more]
CAIE_SALEP9.678e-1429.66Carnitine operon protein caiE OS=Salmonella enteri... [more]
CAIE_SALDC9.678e-1429.66Carnitine operon protein caiE OS=Salmonella dublin... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004389_F07 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIIF_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935874 ID=CK935874; Name=CK935874; organism=Citrus sinensis; type=EST; length=920bp
GGGGGAAAAACAAGAAGAGGGGAAAAAGAAAAAATGGCGGCTCTAGCCCG
GATCACGAGGCGAGCATTAACCACGCAGCTATCCCATGGACACGTCATCC
GCCGAGCATTGTCCACGTCAGCTGCGGCAACAGCGACGGCAACAGCGACA
ACAACGAAGGCAGACGCCAAAAGCATAACGCCGTCAGCGGATCGAGTGAA
GTGGGACTACAGAGGACAGAGGCAGATAATACCGTTGGGCCAGTGGGTTC
CGAAGGTGGCGGTCGATGCCTATGTGGCTCCCAACGTTGTCCTGGCCGGC
CAGGTCACTGTCTGCGACGGAGCCTCCGTCTGGCCTGGCTCTGTCCTACG
TGGCGATCTTAATAAGATTACCGTCGGTTTCTGCTCCAATGTGCAAGAGC
GATGTGTACTTCACGCGGCTTGGAATTCTCCCACCGGGCTGCCGGCGGAA
ACATCCATTGAGAGATTTGTCACAATTGGTGCGTACTGTTCGTTGCGCTC
ATGCACAATTGAGCCAGAGTGCATTATCGGGCAGCATTCCATCCTTATGG
AAGGTTCTATGGTTGAGACGCACGCTATCCTTGAAGCTGGGTCTGTTCTT
CCCCCAGGGAGGAGAATTCCAACTGGTGAGCTTTGGGCAGGCAATCCAGC
AAGGTTTGTCAGGACTTTGACCCATGAAGAAACCTTGGAAATCCCAAAAC
TTGCTGTTGCAATTAACGATCTGAGCAAAAGCCATTTCTCAGAGTTCCTC
CCTTACTCGACAGTATATTTGGAAGTTGAAAAGTTCAAAAAGTCCTTGGG
GATTACTATCTAATGATTTTCAGTGTCCAGTTATTCATGTATCAATTGCA
GCTTTCCGCGCATGAAAATAAGCAGCTTCAGAACACACAAAGCAAGTTTT
TGATTCCTTGTCGCTGAATT
back to top