CK935874

Overview
NameCK935874
Unique NameCK935874
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: PAAY_ECOLI (Phenylacetic acid degradation protein paaY OS=Escherichia coli (strain K12) GN=paaY PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.651e-13
Identity = 43/145 (29.66%), Postives = 76/145 (52.41%), Query Frame = 1
Query:  250 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLP-AETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 681
            P V  +++V P  VL G V +  G  V P + LRGD  +I V   +N+Q+ CV+H       G P  +T +     IG    L  C I    ++G ++++M+G+++  ++I+ A + +     +P   L  G+PA+ +R L+ +E
Sbjct:   11 PVVPEESFVHPTAVLIGDVILGKGVYVGPNASLRGDFGRIVVKDGANIQDNCVMH-------GFPEQDTVVGEDGHIGHSAILHGCIIRRNALVGMNAVVMDGAVIGENSIVGASAFVKAKAEMPANYLIVGSPAKAIRELSEQE 148          
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: CAIE_SALPB (Carnitine operon protein caiE OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=caiE PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.816e-13
Identity = 43/145 (29.66%), Postives = 78/145 (53.79%), Query Frame = 1
Query:  247 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 681
            +P V  DA+V P+ VL G V V  G  + P + LRGD  ++ +   SN+Q  C++H   ++      +T +     IG    L  C +  + ++G +S++M+G+++   +I+ A S +  G +    +L  G+PAR +R +T +E
Sbjct:   10 IPVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQYGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQE 148          
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: CAIE_SALCH (Carnitine operon protein caiE OS=Salmonella choleraesuis GN=caiE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.678e-13
Identity = 43/145 (29.66%), Postives = 78/145 (53.79%), Query Frame = 1
Query:  247 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 681
            +P V  DA+V P+ VL G V V  G  + P + LRGD  +  +   SN+Q+ C++H   ++      +T +     IG    L  C +  + ++G +S++M+G+++   +I+ A S +  G +    +L  G+PAR +R +T +E
Sbjct:   10 IPVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRQILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQE 148          
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: CAIE_ECOUT (Carnitine operon protein caiE OS=Escherichia coli (strain UTI89 / UPEC) GN=caiE PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.678e-13
Identity = 44/145 (30.34%), Postives = 78/145 (53.79%), Query Frame = 1
Query:  247 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 681
            +P V   A+V P+ VL G V V  G  + P + LRGD  ++ V   +N+Q+ C++H   ++      +T +     IG    L  C I  + ++G +S++M+G+++   +I+ A S +  G R    +L  G PAR VR+++ +E
Sbjct:   10 IPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDE 148          
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: CAIE_ECOSM (Carnitine operon protein caiE OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.678e-13
Identity = 44/145 (30.34%), Postives = 78/145 (53.79%), Query Frame = 1
Query:  247 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 681
            +P V   A+V P+ VL G V V  G  + P + LRGD  ++ V   +N+Q+ C++H   ++      +T +     IG    L  C I  + ++G +S++M+G+++   +I+ A S +  G R    +L  G PAR VR+++ +E
Sbjct:   10 IPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLLVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDE 148          
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: CAIE_ECOLU (Carnitine operon protein caiE OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.678e-13
Identity = 44/145 (30.34%), Postives = 78/145 (53.79%), Query Frame = 1
Query:  247 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 681
            +P V   A+V P+ VL G V V  G  + P + LRGD  ++ V   +N+Q+ C++H   ++      +T +     IG    L  C I  + ++G +S++M+G+++   +I+ A S +  G R    +L  G PAR VR+++ +E
Sbjct:   10 IPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDE 148          
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: CAIE_ECOL6 (Carnitine operon protein caiE OS=Escherichia coli O6 GN=caiE PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.678e-13
Identity = 44/145 (30.34%), Postives = 78/145 (53.79%), Query Frame = 1
Query:  247 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 681
            +P V   A+V P+ VL G V V  G  + P + LRGD  ++ V   +N+Q+ C++H   ++      +T +     IG    L  C I  + ++G +S++M+G+++   +I+ A S +  G R    +L  G PAR VR+++ +E
Sbjct:   10 IPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDE 148          
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: CAIE_ECOL5 (Carnitine operon protein caiE OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.678e-13
Identity = 44/145 (30.34%), Postives = 78/145 (53.79%), Query Frame = 1
Query:  247 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 681
            +P V   A+V P+ VL G V V  G  + P + LRGD  ++ V   +N+Q+ C++H   ++      +T +     IG    L  C I  + ++G +S++M+G+++   +I+ A S +  G R    +L  G PAR VR+++ +E
Sbjct:   10 IPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDE 148          
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: CAIE_ECOK1 (Carnitine operon protein caiE OS=Escherichia coli O1:K1 / APEC GN=caiE PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.678e-13
Identity = 44/145 (30.34%), Postives = 78/145 (53.79%), Query Frame = 1
Query:  247 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 681
            +P V   A+V P+ VL G V V  G  + P + LRGD  ++ V   +N+Q+ C++H   ++      +T +     IG    L  C I  + ++G +S++M+G+++   +I+ A S +  G R    +L  G PAR VR+++ +E
Sbjct:   10 IPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDE 148          
BLAST of CK935874 vs. ExPASy Swiss-Prot
Match: CAIE_ECO81 (Carnitine operon protein caiE OS=Escherichia coli O81 (strain ED1a) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.678e-13
Identity = 44/145 (30.34%), Postives = 78/145 (53.79%), Query Frame = 1
Query:  247 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 681
            +P V   A+V P+ VL G V V  G  + P + LRGD  ++ V   +N+Q+ C++H   ++      +T +     IG    L  C I  + ++G +S++M+G+++   +I+ A S +  G R    +L  G PAR VR+++ +E
Sbjct:   10 IPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDE 148          
The following BLAST results are available for this feature:
BLAST of CK935874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
PAAY_ECOLI1.651e-1329.66Phenylacetic acid degradation protein paaY OS=Esch... [more]
CAIE_SALPB2.816e-1329.66Carnitine operon protein caiE OS=Salmonella paraty... [more]
CAIE_SALCH3.678e-1329.66Carnitine operon protein caiE OS=Salmonella choler... [more]
CAIE_ECOUT3.678e-1330.34Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOSM3.678e-1330.34Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOLU3.678e-1330.34Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOL63.678e-1330.34Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOL53.678e-1330.34Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOK13.678e-1330.34Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO813.678e-1330.34Carnitine operon protein caiE OS=Escherichia coli ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004389_F07 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIIF_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935874 ID=CK935874; Name=CK935874; organism=Citrus sinensis; type=EST; length=920bp
GGGGGAAAAACAAGAAGAGGGGAAAAAGAAAAAATGGCGGCTCTAGCCCG
GATCACGAGGCGAGCATTAACCACGCAGCTATCCCATGGACACGTCATCC
GCCGAGCATTGTCCACGTCAGCTGCGGCAACAGCGACGGCAACAGCGACA
ACAACGAAGGCAGACGCCAAAAGCATAACGCCGTCAGCGGATCGAGTGAA
GTGGGACTACAGAGGACAGAGGCAGATAATACCGTTGGGCCAGTGGGTTC
CGAAGGTGGCGGTCGATGCCTATGTGGCTCCCAACGTTGTCCTGGCCGGC
CAGGTCACTGTCTGCGACGGAGCCTCCGTCTGGCCTGGCTCTGTCCTACG
TGGCGATCTTAATAAGATTACCGTCGGTTTCTGCTCCAATGTGCAAGAGC
GATGTGTACTTCACGCGGCTTGGAATTCTCCCACCGGGCTGCCGGCGGAA
ACATCCATTGAGAGATTTGTCACAATTGGTGCGTACTGTTCGTTGCGCTC
ATGCACAATTGAGCCAGAGTGCATTATCGGGCAGCATTCCATCCTTATGG
AAGGTTCTATGGTTGAGACGCACGCTATCCTTGAAGCTGGGTCTGTTCTT
CCCCCAGGGAGGAGAATTCCAACTGGTGAGCTTTGGGCAGGCAATCCAGC
AAGGTTTGTCAGGACTTTGACCCATGAAGAAACCTTGGAAATCCCAAAAC
TTGCTGTTGCAATTAACGATCTGAGCAAAAGCCATTTCTCAGAGTTCCTC
CCTTACTCGACAGTATATTTGGAAGTTGAAAAGTTCAAAAAGTCCTTGGG
GATTACTATCTAATGATTTTCAGTGTCCAGTTATTCATGTATCAATTGCA
GCTTTCCGCGCATGAAAATAAGCAGCTTCAGAACACACAAAGCAAGTTTT
TGATTCCTTGTCGCTGAATT
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