CK935879

Overview
NameCK935879
Unique NameCK935879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length914
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935879 vs. ExPASy Swiss-Prot
Match: UCRI_SYNPW (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain WH7803) GN=petC PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 4.732e-61
Identity = 108/177 (61.02%), Postives = 130/177 (73.45%), Query Frame = 2
Query:  185 TSIPADRVPDMSKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWRA 715
            T +PA  VP M +RQ MNLL  G+V+      L P   +F PP    +GGGT+AKD +GN + A+ WL+TH  GDR+L +GLKGDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ +VEN  V    WT+TDFRTGE PW A
Sbjct:    2 TQMPAGDVPGMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPRAAGSGGGTSAKDELGNAVTASGWLSTHPAGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVENDNVFVSQWTDTDFRTGEKPWWA 178          
BLAST of CK935879 vs. ExPASy Swiss-Prot
Match: UCRI_NOSSP (Cytochrome b6-f complex iron-sulfur subunit OS=Nostoc sp. (strain PCC 7906) GN=petC PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 6.180e-61
Identity = 107/170 (62.94%), Postives = 125/170 (73.53%), Query Frame = 2
Query:  206 VPDMSKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWRA 715
            VPDM +RQ MNLL  G V+      L P   +F PP  G AGGGTTAKD +GND+  + +L     GDR L +GLKGDPTY+VVE  + +  YGINA+CTHLGCVVPWN AENKF CPCHGSQY+  G+VVRGPAPLSLALAHAN  + K++  PWTETDFRTG+APW A
Sbjct:   10 VPDMGRRQFMNLLTFGTVTGVALGALYPVVKYFIPPASGGAGGGTTAKDELGNDVSLSKFLENRNAGDRALVQGLKGDPTYIVVENKQAIKDYGINAICTHLGCVVPWNVAENKFKCPCHGSQYDETGKVVRGPAPLSLALAHANTVDDKIILSPWTETDFRTGDAPWWA 179          
BLAST of CK935879 vs. ExPASy Swiss-Prot
Match: UCRI_SYNS3 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9311) GN=petC PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.348e-60
Identity = 106/175 (60.57%), Postives = 128/175 (73.14%), Query Frame = 2
Query:  185 TSIPADRVPDMSKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPW 709
            T +PA  VP M +RQ MNLL  G+V+      L P A +F PP     GGGT+AKD +GN + A+ WL++H  GDR+L +GLKGDPTYL+VE    + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ +V+N  V    WTETDFRTGE PW
Sbjct:    2 TQMPASDVPGMGRRQFMNLLTFGSVTGVALGALYPVANYFIPPRAAGGGGGTSAKDELGNSVTASGWLSSHAEGDRSLVQGLKGDPTYLIVEGVDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVDNDNVFVSQWTETDFRTGEKPW 176          
BLAST of CK935879 vs. ExPASy Swiss-Prot
Match: UCRI_MASLA (Cytochrome b6-f complex iron-sulfur subunit OS=Mastigocladus laminosus GN=petC PE=1 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 2.348e-60
Identity = 104/168 (61.90%), Postives = 125/168 (74.40%), Query Frame = 2
Query:  206 VPDMSKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPW 709
            VPDM +RQ MNLL  G V+      L P   +F PP  G+ GGGTTAKD +GN++  + +L +H  GDR L +GLKGDPTY+VVE  + +  YGINAVCTHLGCVVPWN+AENKF CPCHGSQY+  G+V+RGPAPLSLAL HA V++  +V  PWTETDFRTGE PW
Sbjct:   10 VPDMGRRQFMNLLAFGTVTGVALGALYPLVKYFIPPSGGAVGGGTTAKDKLGNNVKVSKFLESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDETGKVIRGPAPLSLALCHATVQDDNIVLTPWTETDFRTGEKPW 177          
BLAST of CK935879 vs. ExPASy Swiss-Prot
Match: UCRI_SYNP6 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petC PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.067e-60
Identity = 107/173 (61.85%), Postives = 127/173 (73.41%), Query Frame = 2
Query:  197 ADRVPDMSKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWRA 715
            A  VP M +RQ MNLL  G+V+      L P   +F PP  G +GGG  AKDA+GND++ + +L  H  GDRTL +GLKGDPTYLVVE  + +  YGINAVCTHLGCVVPWN++ENKF CPCHGSQY+  G+VVRGPAPLSLALAH +V + KV   PWTETDFRTG+ PW A
Sbjct:    7 ASDVPSMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPSSGGSGGGVAAKDALGNDVVLSKFLADHNVGDRTLVQGLKGDPTYLVVESSEAIGDYGINAVCTHLGCVVPWNASENKFKCPCHGSQYDATGKVVRGPAPLSLALAHVSVTDDKVFLSPWTETDFRTGDNPWWA 179          
BLAST of CK935879 vs. ExPASy Swiss-Prot
Match: UCRI_SYNE7 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus elongatus (strain PCC 7942) GN=petC PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.067e-60
Identity = 107/173 (61.85%), Postives = 127/173 (73.41%), Query Frame = 2
Query:  197 ADRVPDMSKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWRA 715
            A  VP M +RQ MNLL  G+V+      L P   +F PP  G +GGG  AKDA+GND++ + +L  H  GDRTL +GLKGDPTYLVVE  + +  YGINAVCTHLGCVVPWN++ENKF CPCHGSQY+  G+VVRGPAPLSLALAH +V + KV   PWTETDFRTG+ PW A
Sbjct:    7 ASDVPSMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPSSGGSGGGVAAKDALGNDVVLSKFLADHNVGDRTLVQGLKGDPTYLVVESSEAIGDYGINAVCTHLGCVVPWNASENKFKCPCHGSQYDATGKVVRGPAPLSLALAHVSVTDDKVFLSPWTETDFRTGDNPWWA 179          
BLAST of CK935879 vs. ExPASy Swiss-Prot
Match: UCRI_SYNSC (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9605) GN=petC PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 4.006e-60
Identity = 106/177 (59.89%), Postives = 131/177 (74.01%), Query Frame = 2
Query:  185 TSIPADRVPDMSKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWRA 715
            T + +  VP M +RQ MNLL  G+V+      L P A +F PP    +GGGT+AKD +GN I A+ WL++H  GDR+L +GLKGDPTYL+VE +  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY++ G+VVRGPAPLSLALA+ +VEN  V    WTETDFRTG+ PW A
Sbjct:    2 TQLSSSDVPGMGRRQFMNLLTFGSVTGVALGALYPVANYFIPPKAAGSGGGTSAKDELGNPITASGWLSSHPEGDRSLVQGLKGDPTYLIVEGEDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDSTGKVVRGPAPLSLALANVSVENDNVFVSQWTETDFRTGDKPWWA 178          
BLAST of CK935879 vs. ExPASy Swiss-Prot
Match: UCRI_PROMM (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9313) GN=petC PE=3 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 4.006e-60
Identity = 106/175 (60.57%), Postives = 126/175 (72.00%), Query Frame = 2
Query:  185 TSIPADRVPDMSKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPW 709
            T + +  VP M +RQ MNLL  G+V+      L P   +F PP    +GGGT+AKD +GN + A+ WL  H  GDR+L +GLKGDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQYN+ G+VVRGPAPLSLALA+  VEN  V    WTETDFRTGE PW
Sbjct:    2 TQMTSSDVPGMGRRQFMNLLTFGSVTGVALGSLYPVVKYFIPPRASGSGGGTSAKDELGNSVTASGWLANHSDGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGVNKFVCPCHGSQYNSTGKVVRGPAPLSLALANIAVENDNVFVSQWTETDFRTGEKPW 176          
BLAST of CK935879 vs. ExPASy Swiss-Prot
Match: UCRI_PROM3 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9303) GN=petC PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 4.006e-60
Identity = 106/175 (60.57%), Postives = 126/175 (72.00%), Query Frame = 2
Query:  185 TSIPADRVPDMSKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPW 709
            T + +  VP M +RQ MNLL  G+V+      L P   +F PP    +GGGT+AKD +GN + A+ WL  H  GDR+L +GLKGDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQYN+ G+VVRGPAPLSLALA+  VEN  V    WTETDFRTGE PW
Sbjct:    2 TQMTSSDVPGMGRRQFMNLLTFGSVTGVALGSLYPVVKYFIPPRASGSGGGTSAKDELGNSVTASGWLANHSDGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGVNKFVCPCHGSQYNSTGKVVRGPAPLSLALANIAVENDNVFVSQWTETDFRTGEKPW 176          
BLAST of CK935879 vs. ExPASy Swiss-Prot
Match: UCRIB_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Synechocystis sp. (strain PCC 6803) GN=petC2 PE=3 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 5.232e-60
Identity = 106/171 (61.99%), Postives = 130/171 (76.02%), Query Frame = 2
Query:  206 VPDMSKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANV-ENGKVVFVPWTETDFRTGEAPWRA 715
            VPD+ +RQ MNLL  G ++      L P   +  PP  G +GGG TAKDA+GND+   ++L +H  GDR L +GLKGDPTY+VV+ D T+A+YGINAVCTHLGCVVPWN++ENKF+CPCHGSQYN +G+VVRGPAPLSLALAHA V ++ K+V   WTETDFRT E PW A
Sbjct:   10 VPDLGRRQFMNLLTFGTITGVAAGALYPAVKYLIPPSSGGSGGGVTAKDALGNDVKVTEFLASHNAGDRVLAQGLKGDPTYIVVQGDDTIANYGINAVCTHLGCVVPWNASENKFMCPCHGSQYNAEGKVVRGPAPLSLALAHATVTDDDKLVLSTWTETDFRTDEDPWWA 180          
The following BLAST results are available for this feature:
BLAST of CK935879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRI_SYNPW4.732e-6161.02Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_NOSSP6.180e-6162.94Cytochrome b6-f complex iron-sulfur subunit OS=Nos... [more]
UCRI_SYNS32.348e-6060.57Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_MASLA2.348e-6061.90Cytochrome b6-f complex iron-sulfur subunit OS=Mas... [more]
UCRI_SYNP63.067e-6061.85Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNE73.067e-6061.85Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNSC4.006e-6059.89Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_PROMM4.006e-6060.57Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM34.006e-6060.57Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRIB_SYNY35.232e-6061.99Cytochrome b6-f complex iron-sulfur subunit 2 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004389_E06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935879 ID=CK935879; Name=CK935879; organism=Citrus sinensis; type=EST; length=914bp
GGGGGGTTGCCTCCAATAATTCTCCACAATGGCTTCCTCCTCTTCTCTCT
CCTCAGCAACTCCTTCTCAGCTATGCTCAAGCAAGGGTGGTATGTTCTGT
CCATCAAGAGCTTTTCTTGTGAAACCAGCAAGGACCCAGATGGTGACAAA
GAATCCAATGGGAATGAAGATCAAGTGCCAGGCTACAAGTATTCCAGCTG
ATAGAGTGCCTGATATGAGCAAGAGGCAGCTCATGAATTTGCTTCTCTTG
GGTGCTGTTTCTCTTCCCACTGGATTTATGTTGGTTCCTTATGCGACCTT
CTTTGCCCCACCTGGTTTAGGAAGTGCTGGTGGTGGTACTACTGCCAAGG
ATGCCATTGGCAATGACATCATTGCCGCTGATTGGCTTAACACGCACGGC
CCTGGGGACCGAACCCTCACCGAAGGATTGAAGGGAGATCCAACCTACCT
TGTTGTGGAAAAGGACAAAACACTTGCATCATATGGAATCAATGCTGTCT
GCACTCACCTTGGATGTGTGGTGCCATGGAATTCAGCTGAGAACAAGTTC
ATCTGTCCCTGCCACGGATCCCAATACAATAACCAAGGAAGAGTTGTGAG
AGGGCCTGCTCCATTGTCATTGGCATTGGCTCATGCCAACGTTGAAAATG
GTAAGGTAGTCTTCGTTCCATGGACGGAAACAGATTTCAGAACTGGTGAA
GCTCCATGGCGGGCTTAAACTTGTTCCGGTGCCTGTGCTTTCAATATTCA
AGTTTTGGCCGGTCGGTTTGCTTTGCCGTACTGCATAAACATACTGTAAC
GGAACATGCTTTATCAGAATGAAGCTTCCAACATGTAAAGTTACTTGGCT
TTGATCATGCTATCTTGCAATCTTGGCAATNTNNNCAATTTTCTCTTATC
CATTCATTCTTTGT
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