CK935879

Overview
NameCK935879
Unique NameCK935879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length914
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935879 vs. ExPASy Swiss-Prot
Match: UCRIC_ANASP (Cytochrome b6-f complex iron-sulfur subunit 3 OS=Anabaena sp. (strain PCC 7120) GN=petC3 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.811e-36
Identity = 80/175 (45.71%), Postives = 102/175 (58.29%), Query Frame = 2
Query:  188 SIPADRVPDMSKRQLMNLLLLGAVSLPTGFMLVPYATFF-APPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPW 709
            SIP +  P +S+RQL+N +    V++  G  L P   F  AP     AGG   AKD +G  I A+  L    P  R L  GL G+PTYL+V++D TL   G+   CTHLGC  PWN  + +F CPCHGS+Y   G VVRGPAPL L +    V +  ++  PWTETD RTG+ PW
Sbjct:    4 SIPIES-PSLSRRQLLNFITGATVAVTAGAALYPAGKFLIAPAEKTGAGGAILAKDILGKQIPASQIL-AEPPQTRALVAGLAGEPTYLIVKEDHTLDRIGLVDNCTHLGCTFPWNPLDQQFQCPCHGSRYAPDGSVVRGPAPLPLKIVQVAVIDNSILISPWTETDPRTGKKPW 176          
BLAST of CK935879 vs. ExPASy Swiss-Prot
Match: UCRIB_ANAVT (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petC2 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.607e-35
Identity = 78/168 (46.43%), Postives = 94/168 (55.95%), Query Frame = 2
Query:  209 PDMSKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGS-AGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPW 709
            P MS+RQL+N      V+      + P   FF PP   + A GG  AKD IG+ I A+  L     G R L  GL G+PTYL V +D TL   GI   CTHLGC  PWN  + +F CPCHGS+Y+ QG V RGPA   L L H  V++  +    W ETD RTGE PW
Sbjct:   10 PSMSRRQLLNFFTGAIVAATASAAIYPATKFFMPPAESTDAEGGVLAKDKIGHPIPASQIL-VQASGTRALIAGLAGEPTYLTVREDGTLDPMGIVNNCTHLGCTFPWNPVDQQFQCPCHGSRYDAQGSVERGPANRPLKLVHVQVKDDYIWISSWQETDPRTGEKPW 176          
BLAST of CK935879 vs. ExPASy Swiss-Prot
Match: UCRIB_ANASP (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Anabaena sp. (strain PCC 7120) GN=petC2 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.891e-34
Identity = 77/168 (45.83%), Postives = 94/168 (55.95%), Query Frame = 2
Query:  209 PDMSKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGS-AGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPW 709
            P MS+RQL+N      V+      + P   FF PP   + A GG  A+D IG+ I A+  L     G R L  GL G+PTYL V +D TL   GI   CTHLGC  PWN  + +F CPCHGS+Y+ QG V RGPA   L L    V++  +   PW ETD RTGE PW
Sbjct:   10 PSMSRRQLLNFFTGAIVATTASAAIYPATKFFMPPAESTDAEGGILAQDKIGHPIPASQIL-AQASGTRALIAGLAGEPTYLTVREDGTLDPMGIVNNCTHLGCTFPWNPVDQQFQCPCHGSRYDAQGSVERGPANRPLKLVQVQVKDDYIWISPWQETDPRTGEKPW 176          
BLAST of CK935879 vs. ExPASy Swiss-Prot
Match: UCRI_CHLTE (Cytochrome b6-f complex iron-sulfur subunit OS=Chlorobium tepidum GN=petC PE=3 SV=4)

HSP 1 Score: 73.559 bits (179), Expect = 1.823e-12
Identity = 30/75 (40.00%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  437 DPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVV 661
            D   +VV    +L +  ++A+CTHLGC+V W+ A +   CPCHG++Y   G+++ GP PL L      +E+GK+V
Sbjct:  105 DDKVIVVNHGGSLTA--VSAICTHLGCLVHWDEAADMIACPCHGAKYTQDGKIISGPQPLPLKQYKVKIEDGKIV 177          
BLAST of CK935879 vs. ExPASy Swiss-Prot
Match: UCRI_CHLLT (Cytochrome b6-f complex iron-sulfur subunit OS=Chlorobium limicola f.sp. thiosulfatophilum GN=petC PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 4.062e-12
Identity = 30/71 (42.25%), Postives = 45/71 (63.38%), Query Frame = 2
Query:  449 LVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVV 661
            +VV K   L +  ++AVCTHLGC+V W  A+N++ CPCHG++Y   G ++ GP PL L    A +E   ++
Sbjct:  109 IVVNKGGALTA--VSAVCTHLGCLVNWVDADNQYFCPCHGAKYKLTGEIISGPQPLPLKQYKARIEGDSII 177          
The following BLAST results are available for this feature:
BLAST of CK935879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRIC_ANASP1.811e-3645.71Cytochrome b6-f complex iron-sulfur subunit 3 OS=A... [more]
UCRIB_ANAVT7.607e-3546.43Cytochrome b6-f complex iron-sulfur subunit 2 OS=A... [more]
UCRIB_ANASP2.891e-3445.83Cytochrome b6-f complex iron-sulfur subunit 2 OS=A... [more]
UCRI_CHLTE1.823e-1240.00Cytochrome b6-f complex iron-sulfur subunit OS=Chl... [more]
UCRI_CHLLT4.062e-1242.25Cytochrome b6-f complex iron-sulfur subunit OS=Chl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004389_E06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935879 ID=CK935879; Name=CK935879; organism=Citrus sinensis; type=EST; length=914bp
GGGGGGTTGCCTCCAATAATTCTCCACAATGGCTTCCTCCTCTTCTCTCT
CCTCAGCAACTCCTTCTCAGCTATGCTCAAGCAAGGGTGGTATGTTCTGT
CCATCAAGAGCTTTTCTTGTGAAACCAGCAAGGACCCAGATGGTGACAAA
GAATCCAATGGGAATGAAGATCAAGTGCCAGGCTACAAGTATTCCAGCTG
ATAGAGTGCCTGATATGAGCAAGAGGCAGCTCATGAATTTGCTTCTCTTG
GGTGCTGTTTCTCTTCCCACTGGATTTATGTTGGTTCCTTATGCGACCTT
CTTTGCCCCACCTGGTTTAGGAAGTGCTGGTGGTGGTACTACTGCCAAGG
ATGCCATTGGCAATGACATCATTGCCGCTGATTGGCTTAACACGCACGGC
CCTGGGGACCGAACCCTCACCGAAGGATTGAAGGGAGATCCAACCTACCT
TGTTGTGGAAAAGGACAAAACACTTGCATCATATGGAATCAATGCTGTCT
GCACTCACCTTGGATGTGTGGTGCCATGGAATTCAGCTGAGAACAAGTTC
ATCTGTCCCTGCCACGGATCCCAATACAATAACCAAGGAAGAGTTGTGAG
AGGGCCTGCTCCATTGTCATTGGCATTGGCTCATGCCAACGTTGAAAATG
GTAAGGTAGTCTTCGTTCCATGGACGGAAACAGATTTCAGAACTGGTGAA
GCTCCATGGCGGGCTTAAACTTGTTCCGGTGCCTGTGCTTTCAATATTCA
AGTTTTGGCCGGTCGGTTTGCTTTGCCGTACTGCATAAACATACTGTAAC
GGAACATGCTTTATCAGAATGAAGCTTCCAACATGTAAAGTTACTTGGCT
TTGATCATGCTATCTTGCAATCTTGGCAATNTNNNCAATTTTCTCTTATC
CATTCATTCTTTGT
back to top