CK935885

Overview
NameCK935885
Unique NameCK935885
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935885 vs. ExPASy Swiss-Prot
Match: HOX25_ORYSI (Homeobox-leucine zipper protein HOX25 OS=Oryza sativa subsp. indica GN=HOX25 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.921e-20
Identity = 49/75 (65.33%), Postives = 62/75 (82.67%), Query Frame = 1
Query:  616 KKRRLTVDQVQFLEKSFEVEN-KLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKA 837
            +KRRLT +QV+ LE+SFE E  KLEPERK +LA+ LG+ PRQVA+WFQNRRARWKTKQLE D+D L+ +++ L A
Sbjct:   22 RKRRLTAEQVRALERSFEEEKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLELDFDRLRAAHDELLA 96          
BLAST of CK935885 vs. ExPASy Swiss-Prot
Match: ATB40_ARATH (Homeobox-leucine zipper protein ATHB-40 OS=Arabidopsis thaliana GN=ATHB-40 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.473e-19
Identity = 45/75 (60.00%), Postives = 61/75 (81.33%), Query Frame = 1
Query:  616 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKAD 840
            +KR+LT +QV  LE SF  E+KLE ERK +LA +LGL PRQVA+WFQNRRARWK K+LE++Y+ L+NS++++  D
Sbjct:   56 RKRKLTDEQVNMLEMSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNKLKNSHDNVVVD 130          
BLAST of CK935885 vs. ExPASy Swiss-Prot
Match: ATB51_ARATH (Putative homeobox-leucine zipper protein ATHB-51 OS=Arabidopsis thaliana GN=ATHB-51 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.218e-19
Identity = 44/88 (50.00%), Postives = 65/88 (73.86%), Query Frame = 1
Query:  616 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLXXGERKAKS 879
            KK+RLT  Q+  LE+SF+ E KL+ +RK++L+++LGLQPRQ+A+WFQNRRARWK KQLE+ YD L+  Y+ +  +   L    +K ++
Sbjct:   78 KKKRLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYDVVSREKQMLHDEVKKLRA 165          
BLAST of CK935885 vs. ExPASy Swiss-Prot
Match: HOX22_ORYSJ (Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. japonica GN=HOX22 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 7.195e-19
Identity = 44/81 (54.32%), Postives = 62/81 (76.54%), Query Frame = 1
Query:  613 EKKRRLTVDQVQFLEKSFEVEN-KLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNL 852
            E+KRR T +Q++ LE  F   + KLEP  K +LA++LGLQPRQVAIWFQN+RARW++KQLE DY  L++ Y++L +  ++L
Sbjct:   72 ERKRRFTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRSKYDALHSRVESL 152          
BLAST of CK935885 vs. ExPASy Swiss-Prot
Match: HOX22_ORYSI (Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. indica GN=HOX22 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 7.195e-19
Identity = 44/81 (54.32%), Postives = 62/81 (76.54%), Query Frame = 1
Query:  613 EKKRRLTVDQVQFLEKSFEVEN-KLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNL 852
            E+KRR T +Q++ LE  F   + KLEP  K +LA++LGLQPRQVAIWFQN+RARW++KQLE DY  L++ Y++L +  ++L
Sbjct:   72 ERKRRFTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRSKYDALHSRVESL 152          
BLAST of CK935885 vs. ExPASy Swiss-Prot
Match: HOX24_ORYSJ (Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. japonica GN=HOX24 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.397e-19
Identity = 45/81 (55.56%), Postives = 61/81 (75.31%), Query Frame = 1
Query:  613 EKKRRLTVDQVQFLEKSFEVEN-KLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNL 852
            E+KRR T +QV+ LE +F     KLEP  K +LA++LGLQPRQVAIWFQN+RARW++KQ+E DY  L+  Y++L A  ++L
Sbjct:   63 ERKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRAQYDALHARVESL 143          
BLAST of CK935885 vs. ExPASy Swiss-Prot
Match: HOX24_ORYSI (Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. indica GN=HOX24 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 9.397e-19
Identity = 45/81 (55.56%), Postives = 61/81 (75.31%), Query Frame = 1
Query:  613 EKKRRLTVDQVQFLEKSFEVEN-KLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNL 852
            E+KRR T +QV+ LE +F     KLEP  K +LA++LGLQPRQVAIWFQN+RARW++KQ+E DY  L+  Y++L A  ++L
Sbjct:   64 ERKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRAQYDALHARVESL 144          
BLAST of CK935885 vs. ExPASy Swiss-Prot
Match: ATB21_ARATH (Homeobox-leucine zipper protein ATHB-21 OS=Arabidopsis thaliana GN=ATHB-21 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 45/86 (52.33%), Postives = 65/86 (75.58%), Query Frame = 1
Query:  571 ENGDEDLDEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNS 828
            E G+ + + +F    +KR+L+ +QV+ LE SFE ++KLE ERK +LA +LGL PRQVA+WFQNRRARWK K++E +Y  L+N+Y +
Sbjct:   50 EEGENEGNGWF----RKRKLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRVEDEYTKLKNAYET 131          
BLAST of CK935885 vs. ExPASy Swiss-Prot
Match: ATB22_ARATH (Homeobox-leucine zipper protein ATHB-22 OS=Arabidopsis thaliana GN=ATHB-22 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.664e-18
Identity = 43/98 (43.88%), Postives = 70/98 (71.43%), Query Frame = 1
Query:  583 EDLDEYFHQPEKKRRLTVDQVQFLEKSFEVE--------NKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNL 852
            E+ + +  Q +KK+++T +Q++FLE+SF+ E         KL P+RK++L+K+LGLQPRQ+A+WFQNR+ARWK KQLE  Y+ L+  ++ +  + + L
Sbjct:   60 EESNSFNGQEKKKKKMTSEQLKFLERSFQEEIKLNPDRKMKLNPDRKMKLSKELGLQPRQIAVWFQNRKARWKNKQLEHLYESLRQEFDIVSREKELL 157          
BLAST of CK935885 vs. ExPASy Swiss-Prot
Match: ATB53_ARATH (Homeobox-leucine zipper protein ATHB-53 OS=Arabidopsis thaliana GN=ATHB-53 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.149e-16
Identity = 41/72 (56.94%), Postives = 57/72 (79.17%), Query Frame = 1
Query:  616 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSL 831
            +KR+LT +QV  LE SF  E+KLE  RK ++A +LGL PRQVA+WFQNRRARWK K+LE++Y  L+N ++++
Sbjct:   71 RKRKLTDEQVNMLEYSFGNEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKNHHDNV 142          
The following BLAST results are available for this feature:
BLAST of CK935885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
HOX25_ORYSI2.921e-2065.33Homeobox-leucine zipper protein HOX25 OS=Oryza sat... [more]
ATB40_ARATH2.473e-1960.00Homeobox-leucine zipper protein ATHB-40 OS=Arabido... [more]
ATB51_ARATH4.218e-1950.00Putative homeobox-leucine zipper protein ATHB-51 O... [more]
HOX22_ORYSJ7.195e-1954.32Homeobox-leucine zipper protein HOX22 OS=Oryza sat... [more]
HOX22_ORYSI7.195e-1954.32Homeobox-leucine zipper protein HOX22 OS=Oryza sat... [more]
HOX24_ORYSJ9.397e-1955.56Homeobox-leucine zipper protein HOX24 OS=Oryza sat... [more]
HOX24_ORYSI9.397e-1955.56Homeobox-leucine zipper protein HOX24 OS=Oryza sat... [more]
ATB21_ARATH2.094e-1852.33Homeobox-leucine zipper protein ATHB-21 OS=Arabido... [more]
ATB22_ARATH4.664e-1843.88Homeobox-leucine zipper protein ATHB-22 OS=Arabido... [more]
ATB53_ARATH1.149e-1656.94Homeobox-leucine zipper protein ATHB-53 OS=Arabido... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004389_F01 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIIF_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935885 ID=CK935885; Name=CK935885; organism=Citrus sinensis; type=EST; length=880bp
GGGGGGAAAAAAGGGGGAAAAAATAGGGGAATAAACTCTCTTCATATCCA
CTTCCACTTCCTCTTCCTCTTCTTCTTGTCCGCTTTGCTTCTCCAAACTT
CAAACTTCACACTTCTCCTGAAACCTCTCACGAAACACTCTTTCAAATCC
TTATATTCTGAGTGATGGGTATGAGCAGCCGCTGCTCCCACACATCTCAC
ATAACCGAGATCATAATCACCAGCTTCTTTCGTCATAAGTCTTAAATTAA
ATTTCTTCTCGACTGTTGAATCATCGCATCATCTTTAGCGATGGCTGCTT
AAAAGATTAAGAATATTAGTTTTAAGTTAAATGGCGGGTGGGAGGATGTA
TAATCAAAATAGTTCTAGTGGTGGTGGTACTTCAAGTCTGTCCTTTCTGA
TTCAAAGCCAAAAGGGTTCTTGCTCTAACTCTCAGAATCTTGATGCTTCG
TTCCTCTCTGGCCCTTCTCCTTCTCCTTTTCTTGGACCAAGATCCATGGT
GAGCTTTGAAGATGTGCACTTAGCAAATGGATCCAATAACAGGCCATTTT
TCCGCCCATTTGATCGTGATGAAAATGGGGATGAGGACTTGGATGAGTAC
TTTCATCAACCTGAAAAGAAAAGACGGCTCACGGTTGATCAAGTCCAGTT
TCTTGAAAAAAGCTTCGAGGTAGAGAACAAGCTTGAACCCGAAAGGAAAA
TTCAACTGGCAAAAGACCTTGGCTTGCAGCCTAGACAGGTTGCGATTTGG
TTCCAAAACCGCCGGGCTCGTTGGAAGACTAAACAGCTCGAGAAGGATTA
CGATGTATTGCAAAACAGCTATAATAGCCTTAAGGCCGATTATGACAATC
TCTTNNCAGGAGAAAGAAAAGCTAAAAGCT
back to top