CK935895

Overview
NameCK935895
Unique NameCK935895
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935895 vs. ExPASy Swiss-Prot
Match: MUT11_CHLRE (Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.091e-11
Identity = 50/203 (24.63%), Postives = 88/203 (43.35%), Query Frame = 3
Query:  150 KMAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVTSSSPQPVMSYDQHTNNVMAVGFQ-CDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA-AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMT 749
            K +    +LA+ S D+T+  W+A +G    T+      V+ +   PN  YLA A + H ++L+D  + +   + +   HTN V    F    G+ + SGS D T+++WD+R+  C  E  + +  V +     + + +++   +G IR+WD     C   L       V       +   V+     G   +W    G    T
Sbjct:   47 KFSPDGSLLASGSADRTVALWDAATGARVNTLAGHSCGVSDVAWNPNGRYLATAADDHSLKLWDAETGA--CLRTLTGHTNYVFCCNFDGAAGHLLASGSFDETLRLWDVRSGRCLREVPAHSDPVTSAAFSYDGSMVVTSSLDGLIRLWDTQTGHCLKTLFDRDSPPVSFAAFTPNAKYVLCNTLDGRAKLWDYAAGRTRRT 247          
BLAST of CK935895 vs. ExPASy Swiss-Prot
Match: LIS1_PIG (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Sus scrofa GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 3.091e-11
Identity = 63/250 (25.20%), Postives = 105/250 (42.00%), Query Frame = 3
Query:  171 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAAGNPHIRLFDVTSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTE--------------------LISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLXKLQAHNGYILKCLLSPEFCEPHRYLATAS 854
            +LA+ S D TIK W+ +   C RT+   D  V+ + I PN  H ++AA +  I++++V +     V ++  H   V  V    DG  + S S D TV++W +    C+ E  E    V  +   P  +                     L+SG ++  I++WD++   C   LV   D  VR +     G  +++  +  T  VW          N   +  L AH  ++     S +F +   Y+ T S
Sbjct:  164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWEVQTG--YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTLRVW-------DYKNKRCMKTLNAHEHFV----TSLDFHKTAPYVVTGS 399          
BLAST of CK935895 vs. ExPASy Swiss-Prot
Match: LIS1_CHICK (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Gallus gallus GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 4.037e-11
Identity = 62/250 (24.80%), Postives = 105/250 (42.00%), Query Frame = 3
Query:  171 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAAGNPHIRLFDVTSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTE--------------------LISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLXKLQAHNGYILKCLLSPEFCEPHRYLATAS 854
            +LA+ S D TIK W+ +   C RT+   D  V+ + I PN  H ++A+ +  I++++V +     V ++  H   V  V    DG  + S S D TV++W +    C+ E  E    V  +   P  +                     L+SG ++  I++WD++   C   LV   D  VR +     G  +++  +  T  VW          N   +  L AH  ++     S +F +   Y+ T S
Sbjct:  164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTG--YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISEATGSETKKSGKPGPFLLSGSRDKTIKMWDISTGMCLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTLRVW-------DFKNKRCMKTLNAHEHFV----TSLDFHKTAPYVVTGS 399          
BLAST of CK935895 vs. ExPASy Swiss-Prot
Match: TUP1_DICDI (General transcriptional corepressor tupA OS=Dictyostelium discoideum GN=tupA PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.273e-11
Identity = 55/235 (23.40%), Postives = 102/235 (43.40%), Query Frame = 3
Query:  174 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVTSSSPQPVMSYDQ--HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA-AVNTVVLHPNQTELISGDQNGNIRVWDLTA----NSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLXKLQAHNGYILKCLLSPEFCEPHRYLATAS 854
            LAT + DKT+K W+  + +   T    +  +  L+ + +  ++ + +G+   +++D+        +  ++    N V +V    DG  + +GS D  V++WD +       YE    +V +V   P+   L SG  + ++++WDL+     + C        D  V S+    DGS +++ +   +   W    GT  M        LQ H   ++   LSP+    H   AT S
Sbjct:  342 LATGAEDKTVKVWDIHTKKIQHTFYGHELDIYSLDYSSDGRFIVSGSGDKKAKIWDIEKGKCAFTLGNEEVGPKNGVTSVAMSPDGRLVAAGSLDNIVRLWDAQTGYFLERYEGHLDSVYSVAFSPDGKSLASGSLDKSLKLWDLSGSRSRSRCRATFNGHKD-FVLSVAFSPDGSWLISGSKDRSVQFWDPRNGTTHM-------MLQGHKNSVISVALSPK-NNSHGVFATGS 567          
BLAST of CK935895 vs. ExPASy Swiss-Prot
Match: WDR69_DANRE (WD repeat-containing protein 69 OS=Danio rerio GN=wdr69 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.886e-11
Identity = 51/211 (24.17%), Postives = 97/211 (45.97%), Query Frame = 3
Query:  174 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVTSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDL-RAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLXKLQAHNGYILK 800
            +AT S+DKT K W A++G+C+ T +   +++  L   P    +A    +   +L+DV S   + V +   H   ++++ F   G+ + +GS D T  +WD+       +    R  ++ V  + + + + +   + + +VWD     C   L+   D  V  +   + G L+  A+  GT  V+       +   F+ L +L+ H G I K
Sbjct:  150 VATGSFDKTCKLWSAETGKCFYTFRGHTAEIVCLAFNPQSTLVATGSMDTTAKLWDVESG--EEVSTLAGHFAEIISLCFNTTGDRLVTGSFDHTAILWDVPSGRKVHVLSGHRGEISCVQFNWDCSLIATASLDKSCKVWDAEGGQCLATLLGHND-EVLDVCFNYTGQLIATASADGTSRVF-------STDTFQCLCQLEGHKGEISK 350          
BLAST of CK935895 vs. ExPASy Swiss-Prot
Match: LIS1_RAT (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Rattus norvegicus GN=Pafah1b1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.886e-11
Identity = 62/250 (24.80%), Postives = 105/250 (42.00%), Query Frame = 3
Query:  171 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAAGNPHIRLFDVTSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTE--------------------LISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLXKLQAHNGYILKCLLSPEFCEPHRYLATAS 854
            +LA+ S D TIK W+ +   C RT+   D  V+ + I PN  H ++A+ +  I++++V +     V ++  H   V  V    DG  + S S D TV++W +    C+ E  E    V  +   P  +                     L+SG ++  I++WD++   C   LV   D  VR +     G  +++  +  T  VW          N   +  L AH  ++     S +F +   Y+ T S
Sbjct:  164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTG--YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTLRVW-------DYKNKRCMKTLNAHEHFV----TSLDFHKTAPYVVTGS 399          
BLAST of CK935895 vs. ExPASy Swiss-Prot
Match: LIS1_PONAB (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Pongo abelii GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 6.886e-11
Identity = 62/250 (24.80%), Postives = 105/250 (42.00%), Query Frame = 3
Query:  171 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAAGNPHIRLFDVTSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTE--------------------LISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLXKLQAHNGYILKCLLSPEFCEPHRYLATAS 854
            +LA+ S D TIK W+ +   C RT+   D  V+ + I PN  H ++A+ +  I++++V +     V ++  H   V  V    DG  + S S D TV++W +    C+ E  E    V  +   P  +                     L+SG ++  I++WD++   C   LV   D  VR +     G  +++  +  T  VW          N   +  L AH  ++     S +F +   Y+ T S
Sbjct:  164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTG--YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTLRVW-------DYKNKRCMKTLNAHEHFV----TSLDFHKTAPYVVTGS 399          
BLAST of CK935895 vs. ExPASy Swiss-Prot
Match: LIS1_MOUSE (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Mus musculus GN=Pafah1b1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.886e-11
Identity = 62/250 (24.80%), Postives = 105/250 (42.00%), Query Frame = 3
Query:  171 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAAGNPHIRLFDVTSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTE--------------------LISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLXKLQAHNGYILKCLLSPEFCEPHRYLATAS 854
            +LA+ S D TIK W+ +   C RT+   D  V+ + I PN  H ++A+ +  I++++V +     V ++  H   V  V    DG  + S S D TV++W +    C+ E  E    V  +   P  +                     L+SG ++  I++WD++   C   LV   D  VR +     G  +++  +  T  VW          N   +  L AH  ++     S +F +   Y+ T S
Sbjct:  164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTG--YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTLRVW-------DYKNKRCMKTLNAHEHFV----TSLDFHKTAPYVVTGS 399          
BLAST of CK935895 vs. ExPASy Swiss-Prot
Match: LIS1_HUMAN (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Homo sapiens GN=PAFAH1B1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.886e-11
Identity = 62/250 (24.80%), Postives = 105/250 (42.00%), Query Frame = 3
Query:  171 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAAGNPHIRLFDVTSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTE--------------------LISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLXKLQAHNGYILKCLLSPEFCEPHRYLATAS 854
            +LA+ S D TIK W+ +   C RT+   D  V+ + I PN  H ++A+ +  I++++V +     V ++  H   V  V    DG  + S S D TV++W +    C+ E  E    V  +   P  +                     L+SG ++  I++WD++   C   LV   D  VR +     G  +++  +  T  VW          N   +  L AH  ++     S +F +   Y+ T S
Sbjct:  164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTG--YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTLRVW-------DYKNKRCMKTLNAHEHFV----TSLDFHKTAPYVVTGS 399          
BLAST of CK935895 vs. ExPASy Swiss-Prot
Match: LIS1_BOVIN (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Bos taurus GN=PAFAH1B1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.886e-11
Identity = 62/250 (24.80%), Postives = 105/250 (42.00%), Query Frame = 3
Query:  171 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAAGNPHIRLFDVTSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTE--------------------LISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLXKLQAHNGYILKCLLSPEFCEPHRYLATAS 854
            +LA+ S D TIK W+ +   C RT+   D  V+ + I PN  H ++A+ +  I++++V +     V ++  H   V  V    DG  + S S D TV++W +    C+ E  E    V  +   P  +                     L+SG ++  I++WD++   C   LV   D  VR +     G  +++  +  T  VW          N   +  L AH  ++     S +F +   Y+ T S
Sbjct:  164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTG--YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTLRVW-------DYKNKRCMKTLNAHEHFV----TSLDFHKTAPYVVTGS 399          
The following BLAST results are available for this feature:
BLAST of CK935895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
MUT11_CHLRE3.091e-1124.63Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut1... [more]
LIS1_PIG3.091e-1125.20Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_CHICK4.037e-1124.80Platelet-activating factor acetylhydrolase IB subu... [more]
TUP1_DICDI5.273e-1123.40General transcriptional corepressor tupA OS=Dictyo... [more]
WDR69_DANRE6.886e-1124.17WD repeat-containing protein 69 OS=Danio rerio GN=... [more]
LIS1_RAT6.886e-1124.80Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_PONAB6.886e-1124.80Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_MOUSE6.886e-1124.80Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_HUMAN6.886e-1124.80Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_BOVIN6.886e-1124.80Platelet-activating factor acetylhydrolase IB subu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004389_E05 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIIF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935895 ID=CK935895; Name=CK935895; organism=Citrus sinensis; type=EST; length=857bp
GGGGACTGATCACATAATTACTGGATTTAGAGGTTCACTTCGCTTAGTTC
ATTATATGTGATCGCCCCCCGCGCCCGCCCCCCCACCCCAAAAAAAAGCA
TTGATCCTCATTTCTATATACGAATTGAATCCGGCATTTGGAGTAGAATA
AGATGGCACAGCCATCAGTGATACTCGCGACAGCTAGTTATGATAAGACA
ATCAAATTTTGGGAGGCCAAAAGCGGTCGCTGCTACCGTACCATTCAATA
CCCTGATTCGCAAGTTAATCGGCTAGAGATAACTCCAAATAAACACTACC
TGGCTGCTGCTGGTAATCCGCATATTCGCTTGTTTGATGTTACCTCAAGC
AGCCCGCAGCCTGTGATGAGCTATGATCAGCATACTAATAATGTTATGGC
AGTGGGGTTTCAGTGTGATGGAAACTGGATGTATTCAGGTTCCGAGGATG
GAACGGTAAAGATTTGGGATTTAAGGGCCCCAGTTTGTCAAATGGAATAC
GAAAGTCGTGCTGCTGTTAACACTGTTGTATTGCACCCAAATCAGACTGA
ACTGATATCTGGCGACCAAAATGGGAATATTCGTGTGTGGGATTTGACAG
CAAATTCTTGCAGTTGTGAACTGGTGCCAGAGGTAGATACAGCTGTTAGG
TCTTTAACAGTTATGTGGGACGGAAGCCTGGTAGTTGCTGCTAATAACCA
TGGAACATGTTATGTTTGGCGCTTGATGCGTGGGACTCAGACTATGACCA
ACTTTGAGCCACTNNNNAAACTACAAGCACATAATGGATACATCCTGAAA
TGTCTCCTTTCTCCGGAGTTTTGTGAACCCCACAGATATCTGGCCACTGC
ATCTTCT
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