CK935896

Overview
NameCK935896
Unique NameCK935896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_SODGM (RNA pyrophosphohydrolase OS=Sodalis glossinidius (strain morsitans) GN=rppH PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.668e-18
Identity = 61/158 (38.61%), Postives = 82/158 (51.90%), Query Frame = 3
Query:  195 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEV--LAEVPYWLTYDFPPEVREKLKHQWGGDWK----GQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 650
            +GYR NVGI + N   ++  A R     SWQ PQGGI+  E  + A  REL EE G+S  +V  LA    WL Y  P     K   +W  D K    GQ QKWFLL+    + +IN+   +   PEF  W+W+S    + + V FK+ VY+ V   F+
Sbjct:    5 DGYRPNVGIVICNLDGQVLWARRYG-QHSWQFPQGGINAGETAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLP-----KRLVRW--DTKPVCIGQKQKWFLLQLLCPDADINM--QRGGIPEFDGWRWVSFWYPVRQVVSFKRDVYRRVMKEFS 152          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_PSYIN (RNA pyrophosphohydrolase OS=Psychromonas ingrahamii (strain 37) GN=rppH PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.668e-18
Identity = 56/150 (37.33%), Postives = 77/150 (51.33%), Query Frame = 3
Query:  195 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEV--LAEVPYWLTYDFPPEVREKLKHQWGGD---WKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYK 629
            +GYR NVGI + N++ ++  A R     SWQ PQGGI E E P+ A  REL EE G+    V  LA   +WL Y  P     K   +W        GQ Q+WFLL+    E++I    +    PEF  W+W++    + + V FK  VY+
Sbjct:    5 DGYRPNVGIIICNNNAQVLWAKRFG-QHSWQFPQGGIKEGETPEQAMYRELYEEVGLKPEHVKLLATSRHWLRYKLP-----KRLVRWDSPDPVCIGQKQRWFLLQLISDEQQIEF--EACGNPEFDAWRWVTYWYPVRQVVSFKCEVYR 146          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_BLOFL (RNA pyrophosphohydrolase OS=Blochmannia floridanus GN=rppH PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.649e-17
Identity = 60/153 (39.22%), Postives = 83/153 (54.25%), Query Frame = 3
Query:  198 GYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEV--LAEVPYWLTYDFPPE-VREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 647
            GYR NVGI L N+  ++  A R     SWQ PQGGI+  E P+ A  REL EE G++  +V  L+    W  Y  P + VR ++K        GQ QKWFLLK   K+ +IN+    S+   F  W+W+S    + + V FK+ VY++V   F
Sbjct:    6 GYRLNVGIVLCNTYGQVLWAKRYK-QCSWQFPQGGINIGETPEQAMYRELFEEIGLNYCDVRILSITRCWFCYKLPTQLVRWRIKPL----CLGQKQKWFLLKLLSKDTKINM--KTSKVCTFDTWQWVSLWYPIRQVVFFKRHVYRKVMKEF 151          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_NITOC (RNA pyrophosphohydrolase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=rppH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.813e-17
Identity = 52/155 (33.55%), Postives = 81/155 (52.26%), Query Frame = 3
Query:  195 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEET--GVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTP 653
            +G+R NVG+ L N   ++  A R     +WQ PQGG+ E+E  + AA REL+EE   GV   +++     WL Y  P      +++       GQ Q W+L +F G+E+++ L  + ++KPEF  W W++    L   V FK+ VY+       P
Sbjct:    5 DGFRANVGLILCNQDDRVLWARRAR-EKAWQFPQGGVKESETTEEAAYRELEEEVGLGVEHVKIIGCTRSWLRYRLP---NRYVRYGNKPLCIGQKQIWYLFRFVGEEQDVQL--NLTDKPEFDYWCWVNYWYPLREIVYFKRKVYQRALNELAP 153          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_PSYA2 (RNA pyrophosphohydrolase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rppH PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 56/157 (35.67%), Postives = 78/157 (49.68%), Query Frame = 3
Query:  195 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGV--SSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 659
            +G+R NVGI L N+  ++  A R+   ++WQ PQGGID  E P  A  REL EE G+     ++LA    WL Y  P   +  ++H       GQ QKWFLL+    E     +     K EF  W+W+S    L + + FK+ VY+       P L
Sbjct:    5 DGFRANVGIILANTQGQVLWAKRIG-HNAWQFPQGGIDRGETPMDAMYRELWEEVGLHPRHVDLLAVTQDWLRYRLP---KRYVRHGQYPLCIGQKQKWFLLRL--DEPNTQHIRFDEGKAEFDNWQWVSYWYPLGQVIHFKRGVYRRALQELVPEL 155          
The following BLAST results are available for this feature:
BLAST of CK935896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 325
Match NameE-valueIdentityDescription
RPPH_SODGM5.668e-1838.61RNA pyrophosphohydrolase OS=Sodalis glossinidius (... [more]
RPPH_PSYIN9.668e-1837.33RNA pyrophosphohydrolase OS=Psychromonas ingrahami... [more]
RPPH_BLOFL1.649e-1739.22RNA pyrophosphohydrolase OS=Blochmannia floridanus... [more]
RPPH_NITOC2.813e-1733.55RNA pyrophosphohydrolase OS=Nitrosococcus oceani (... [more]
RPPH_PSYA23.674e-1735.67RNA pyrophosphohydrolase OS=Psychrobacter arcticus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004389_C10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIIF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935896 ID=CK935896; Name=CK935896; organism=Citrus sinensis; type=EST; length=841bp
GGGGAATGGCTTTATGTTTAAGCCGATCTTTCTCCTCGTATTCCCAGCTT
CATCTTTCTTCTCTCCTCAGTCGCTGCAAGCCTAATTTCACATCCCCAAA
TTACCCTCATAAACTCCCCAAATCTACTAACCTGCCACTCGTTCATCATC
AGAATCAAATTTGCTCATCATCATACTCCATGGACGCTCCTCCAGAAGGT
TACCGAAGAAATGTCGGCATCTGTCTCATCAATTCTTCCAAAAAGATTTT
CGCCGCTTCGAGACTTGACATACCTGATAGTTGGCAAATGCCACAGGGCG
GTATTGACGAGAATGAGGATCCCAAAGTTGCTGCCTTAAGGGAATTGAAA
GAAGAAACAGGAGTCAGCTCGGCAGAAGTTCTTGCAGAGGTGCCTTATTG
GTTGACATATGACTTCCCTCCAGAAGTCAGGGAAAAACTTAAACATCAAT
GGGGAGGTGACTGGAAAGGTCAAGCACAGAAGTGGTTTCTCCTCAAGTTC
ACTGGCAAGGAGGAAGAAATCAATCTTCTTGGTGATAAATCTGAGAAACC
TGAGTTTGGCGAGTGGAAGTGGATGTCACCAGAACAAATACTTGAGCGTG
CTGTGGATTTCAAGAAACCTGTTTACAAAGAAGTTTTTACGGTTTTCACA
CCTCATCTTCAATAATATTATGTTGGAATTGTCCGAGATTCTGCAAAACT
GGGTGATAAATTGATTTGTTGAGTCACTAACTTTTCAAAGTCTTTATTGG
ATATCACATACATATCAACTGCCTTGTAATGATATGATATGATATTCTTG
TGATCGATGAAAGAAATAAAATTAAATAACCTTATTAGCAA
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