CK935896

Overview
NameCK935896
Unique NameCK935896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_NITWN (RNA pyrophosphohydrolase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rppH PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.217e-28
Identity = 70/156 (44.87%), Postives = 91/156 (58.33%), Query Frame = 3
Query:  201 YRRNVGICLINSSKKIFAASRL---DIPDS--WQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLL--GDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 647
            YR  VG+ LIN    +F   R     + DS  WQMPQGG+D  ED  +AA REL EET V S E LAE+P WLTYD P  V  +    W G ++GQ QKW+ ++F G++ EIN+   GD   KPEF  W+W   + +    + FK+PVY+ V   F
Sbjct:    9 YRTCVGMMLINERGLVFVGRRAGVEQVDDSYVWQMPQGGVDPGEDTWLAAKRELYEETSVRSIEKLAEIPDWLTYDIPRVVAGR---AWKGRYRGQRQKWYAVRFIGEDNEINIANPGD-GHKPEFTAWRWEPMQNLTGLIIPFKRPVYERVVKEF 160          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_RHOPS (RNA pyrophosphohydrolase OS=Rhodopseudomonas palustris (strain BisB5) GN=rppH PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.712e-28
Identity = 67/156 (42.95%), Postives = 87/156 (55.77%), Query Frame = 3
Query:  201 YRRNVGICLINSSKKIFAASR------LDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 650
            YR  VG+ LIN    +F   R      +D    WQMPQGG+D  ED   AA REL EET V S E + EVP WL YD P  V  +    W G ++GQ QKWF ++FTG + EI++      KPEF  W+W   + + +  V FK+PVY+ V   F+
Sbjct:    9 YRTCVGMMLINREGLVFIGRRAGGIEHVDDTHVWQMPQGGVDPGEDTWEAAKRELYEETNVRSVEKIGEVPDWLIYDIPRTVAGRA---WKGRYRGQRQKWFAVRFTGADSEIDVGAPGGHKPEFTGWRWEPMQNLPDLIVPFKRPVYERVVKEFS 161          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_BARHE (RNA pyrophosphohydrolase OS=Bartonella henselae GN=rppH PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.712e-28
Identity = 67/158 (42.41%), Postives = 89/158 (56.33%), Query Frame = 3
Query:  201 YRRNVGICLINSSKKIFAASRL--------DIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINL-LGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 647
            YRR+VGI + N   K++   RL         I   WQ+PQGGIDENE+P  AA REL EETG+ S E++ E  YW  YDFP E+   +    G  ++GQ QKWF  +FTG+  EI +       K EF +WKW+  E +    + FKK VY ++   F
Sbjct:   12 YRRSVGILVFNHEGKVWVGRRLMVCIHEDTKIYHRWQLPQGGIDENEEPLDAARRELYEETGIRSIELIKEAKYWFHYDFPQEI---VGSVLGSKYRGQIQKWFAFQFTGELSEIKINPPPDGHKAEFDQWKWVDLETLPSIVISFKKHVYMKIVNEF 166          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_WOLPM (RNA pyrophosphohydrolase OS=Wolbachia pipientis wMel GN=rppH PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.542e-28
Identity = 61/150 (40.67%), Postives = 89/150 (59.33%), Query Frame = 3
Query:  201 YRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 650
            YR  VGI L N     F   R +    WQMPQGG+D+ E+ + AALREL EE G +  +V+ +   W+ Y+ P EV   +   W G + GQ Q+WFL+KF G++E+I++  + +  PEF EW+W   + ++  A+ FKK VYK V   F+
Sbjct:    8 YRPCVGIMLFNRQGHAFIGKRFESDSYWQMPQGGVDDGEELEQAALRELLEEVGTNKVKVITKSKDWIYYNLPEEV---IPICWNGKYSGQKQRWFLMKFCGEDEDIDI--NYTGHPEFKEWRWQGIDSLVASAISFKKEVYKTVIEEFS 152          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_RHOPA (RNA pyrophosphohydrolase OS=Rhodopseudomonas palustris GN=rppH PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.542e-28
Identity = 70/157 (44.59%), Postives = 87/157 (55.41%), Query Frame = 3
Query:  201 YRRNVGICLINSSKKIFAASR------LDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLL-GDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 650
            YR  VG+ LIN    +F   R      +D    WQMPQGG+D  ED   AA REL EET V+S E LAEVP WL YD P  V  +    W G ++GQ QKWF  +FTG + EIN++      K EF  W+W     + E  V FK+PVY+ V   F+
Sbjct:    9 YRTCVGVMLINREGLVFIGRRAGGIEHVDDTHVWQMPQGGVDPGEDTWKAAKRELYEETSVNSVEKLAEVPDWLIYDIPRTVAGR---AWKGRYRGQRQKWFAARFTGADSEINVVHPGGGHKAEFTSWRWEPMHNLPELIVPFKRPVYERVVKEFS 162          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_BRASO (RNA pyrophosphohydrolase OS=Bradyrhizobium sp. (strain ORS278) GN=rppH PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.542e-28
Identity = 72/157 (45.86%), Postives = 88/157 (56.05%), Query Frame = 3
Query:  201 YRRNVGICLINSSKKIFAASR------LDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINL--LGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 647
            YR  VGI LINS   +F   R      +D    WQMPQGG+D  ED   AA REL EET V S E LAE+  WLTYD P  V  +    W G ++GQ QKWF L+FTGK+ EI++   G    K EF  W+W   + +    V FK+PVY+ V   F
Sbjct:    9 YRTCVGIALINSEGLVFIGRRAGGIEHVDDTHVWQMPQGGVDPGEDAWEAAKRELYEETSVRSVEKLAEIDDWLTYDIPRTVAGR---AWKGRYRGQRQKWFALRFTGKDSEIDVEHPGGGHHKAEFITWRWEPLQNLPTLIVPFKRPVYERVAKEF 162          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_BRAJA (RNA pyrophosphohydrolase OS=Bradyrhizobium japonicum GN=rppH PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.031e-27
Identity = 68/157 (43.31%), Postives = 87/157 (55.41%), Query Frame = 3
Query:  201 YRRNVGICLINSSKKIFAASR------LDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLG-DKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 650
            YR  VG+ LIN+   +F   R      +D    WQMPQGG+D  ED   AA REL EET V S E L EVP WL YD P  V  +    W G ++GQ QKWF ++FTGK+ EIN+       K EF  W+W   + +    + FK+PVY+ V   F+
Sbjct:    9 YRTCVGVMLINAKGLVFIGRRAGGIEHIDDTHVWQMPQGGVDPGEDTWAAAKRELYEETSVRSVERLGEVPDWLIYDIPRTVAGR---AWKGRYRGQRQKWFAVRFTGKDSEINVENPGGGHKAEFVSWRWEPMKNLPGLIIPFKRPVYERVVKEFS 162          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_BRASB (RNA pyrophosphohydrolase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rppH PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.346e-27
Identity = 71/157 (45.22%), Postives = 87/157 (55.41%), Query Frame = 3
Query:  201 YRRNVGICLINSSKKIFAASR------LDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINL--LGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 647
            YR  VGI LINS   +F   R      +D    WQMPQGG+D  ED   AA REL EET V S E LAE+  WLTYD P  V  +    W G ++GQ QKWF L+FTG + EI++   G    K EF  W+W   + +    V FK+PVY+ V   F
Sbjct:    9 YRTCVGIALINSEGLVFIGRRAGGIEHVDDAHVWQMPQGGVDPGEDAWEAAKRELYEETSVRSVEKLAEIDDWLTYDIPRTVAGR---AWKGRYRGQRQKWFALRFTGTDTEIDVERPGGGVHKAEFISWRWEPMQNLPTLIVPFKRPVYERVVKEF 162          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_NITSB (RNA pyrophosphohydrolase OS=Nitratiruptor sp. (strain SB155-2) GN=rppH PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.758e-27
Identity = 66/153 (43.14%), Postives = 98/153 (64.05%), Query Frame = 3
Query:  201 YRRNVGICLINSS--KKI--FAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 647
            YR NV   +++S+  KK+  F A+R D+PDSWQ PQGGID+ E PK A LRELKEE G    E++AE P W++YDFP ++ +K+       + GQ QK+FL+K    E +I+L    +++PEF ++K++  + +      FK+PVYK+V   F
Sbjct:    6 YRPNVAAIVLSSNYPKKVEFFIAARSDVPDSWQFPQGGIDKGESPKEALLRELKEEIGTDKIEIIAEFPEWVSYDFPKKIAKKMY-----PYDGQTQKYFLVKLK-PEAKIDL---DTKEPEFNDYKFVPYKDLFHYVTFFKRPVYKKVLEYF 149          
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_OLICO (RNA pyrophosphohydrolase OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rppH PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.296e-27
Identity = 65/156 (41.67%), Postives = 84/156 (53.85%), Query Frame = 3
Query:  201 YRRNVGICLINSSKKIFAASR------LDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 650
            YR  VG+ L+N    +F   R      +D    WQMPQGGID  ED   AA REL EET   S E LAE   W TYD P  +  +    W G ++GQ QKWF ++FTG + EIN+      K EF +W+W   + +    V FK+PVY+ V   F+
Sbjct:    9 YRSCVGMMLLNPKGLVFIGRRVGGTELIDPAHVWQMPQGGIDPGEDYWEAAQRELLEETNARSIEKLAEATDWFTYDIPRMIAGR---SWKGRYRGQRQKWFAIRFTGDDSEINVASPAGHKAEFVDWRWEPMQNLPNLVVPFKRPVYERVVKEFS 161          
The following BLAST results are available for this feature:
BLAST of CK935896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 325
Match NameE-valueIdentityDescription
RPPH_NITWN1.217e-2844.87RNA pyrophosphohydrolase OS=Nitrobacter winogradsk... [more]
RPPH_RHOPS2.712e-2842.95RNA pyrophosphohydrolase OS=Rhodopseudomonas palus... [more]
RPPH_BARHE2.712e-2842.41RNA pyrophosphohydrolase OS=Bartonella henselae GN... [more]
RPPH_WOLPM3.542e-2840.67RNA pyrophosphohydrolase OS=Wolbachia pipientis wM... [more]
RPPH_RHOPA3.542e-2844.59RNA pyrophosphohydrolase OS=Rhodopseudomonas palus... [more]
RPPH_BRASO3.542e-2845.86RNA pyrophosphohydrolase OS=Bradyrhizobium sp. (st... [more]
RPPH_BRAJA1.031e-2743.31RNA pyrophosphohydrolase OS=Bradyrhizobium japonic... [more]
RPPH_BRASB1.346e-2745.22RNA pyrophosphohydrolase OS=Bradyrhizobium sp. (st... [more]
RPPH_NITSB1.758e-2743.14RNA pyrophosphohydrolase OS=Nitratiruptor sp. (str... [more]
RPPH_OLICO2.296e-2741.67RNA pyrophosphohydrolase OS=Oligotropha carboxidov... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004389_C10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IIIF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935896 ID=CK935896; Name=CK935896; organism=Citrus sinensis; type=EST; length=841bp
GGGGAATGGCTTTATGTTTAAGCCGATCTTTCTCCTCGTATTCCCAGCTT
CATCTTTCTTCTCTCCTCAGTCGCTGCAAGCCTAATTTCACATCCCCAAA
TTACCCTCATAAACTCCCCAAATCTACTAACCTGCCACTCGTTCATCATC
AGAATCAAATTTGCTCATCATCATACTCCATGGACGCTCCTCCAGAAGGT
TACCGAAGAAATGTCGGCATCTGTCTCATCAATTCTTCCAAAAAGATTTT
CGCCGCTTCGAGACTTGACATACCTGATAGTTGGCAAATGCCACAGGGCG
GTATTGACGAGAATGAGGATCCCAAAGTTGCTGCCTTAAGGGAATTGAAA
GAAGAAACAGGAGTCAGCTCGGCAGAAGTTCTTGCAGAGGTGCCTTATTG
GTTGACATATGACTTCCCTCCAGAAGTCAGGGAAAAACTTAAACATCAAT
GGGGAGGTGACTGGAAAGGTCAAGCACAGAAGTGGTTTCTCCTCAAGTTC
ACTGGCAAGGAGGAAGAAATCAATCTTCTTGGTGATAAATCTGAGAAACC
TGAGTTTGGCGAGTGGAAGTGGATGTCACCAGAACAAATACTTGAGCGTG
CTGTGGATTTCAAGAAACCTGTTTACAAAGAAGTTTTTACGGTTTTCACA
CCTCATCTTCAATAATATTATGTTGGAATTGTCCGAGATTCTGCAAAACT
GGGTGATAAATTGATTTGTTGAGTCACTAACTTTTCAAAGTCTTTATTGG
ATATCACATACATATCAACTGCCTTGTAATGATATGATATGATATTCTTG
TGATCGATGAAAGAAATAAAATTAAATAACCTTATTAGCAA
back to top