CK935896
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_NITWN (RNA pyrophosphohydrolase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rppH PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.217e-28 Identity = 70/156 (44.87%), Postives = 91/156 (58.33%), Query Frame = 3 Query: 201 YRRNVGICLINSSKKIFAASRL---DIPDS--WQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLL--GDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 647 YR VG+ LIN +F R + DS WQMPQGG+D ED +AA REL EET V S E LAE+P WLTYD P V + W G ++GQ QKW+ ++F G++ EIN+ GD KPEF W+W + + + FK+PVY+ V F Sbjct: 9 YRTCVGMMLINERGLVFVGRRAGVEQVDDSYVWQMPQGGVDPGEDTWLAAKRELYEETSVRSIEKLAEIPDWLTYDIPRVVAGR---AWKGRYRGQRQKWYAVRFIGEDNEINIANPGD-GHKPEFTAWRWEPMQNLTGLIIPFKRPVYERVVKEF 160
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_RHOPS (RNA pyrophosphohydrolase OS=Rhodopseudomonas palustris (strain BisB5) GN=rppH PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.712e-28 Identity = 67/156 (42.95%), Postives = 87/156 (55.77%), Query Frame = 3 Query: 201 YRRNVGICLINSSKKIFAASR------LDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 650 YR VG+ LIN +F R +D WQMPQGG+D ED AA REL EET V S E + EVP WL YD P V + W G ++GQ QKWF ++FTG + EI++ KPEF W+W + + + V FK+PVY+ V F+ Sbjct: 9 YRTCVGMMLINREGLVFIGRRAGGIEHVDDTHVWQMPQGGVDPGEDTWEAAKRELYEETNVRSVEKIGEVPDWLIYDIPRTVAGRA---WKGRYRGQRQKWFAVRFTGADSEIDVGAPGGHKPEFTGWRWEPMQNLPDLIVPFKRPVYERVVKEFS 161
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_BARHE (RNA pyrophosphohydrolase OS=Bartonella henselae GN=rppH PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.712e-28 Identity = 67/158 (42.41%), Postives = 89/158 (56.33%), Query Frame = 3 Query: 201 YRRNVGICLINSSKKIFAASRL--------DIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINL-LGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 647 YRR+VGI + N K++ RL I WQ+PQGGIDENE+P AA REL EETG+ S E++ E YW YDFP E+ + G ++GQ QKWF +FTG+ EI + K EF +WKW+ E + + FKK VY ++ F Sbjct: 12 YRRSVGILVFNHEGKVWVGRRLMVCIHEDTKIYHRWQLPQGGIDENEEPLDAARRELYEETGIRSIELIKEAKYWFHYDFPQEI---VGSVLGSKYRGQIQKWFAFQFTGELSEIKINPPPDGHKAEFDQWKWVDLETLPSIVISFKKHVYMKIVNEF 166
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_WOLPM (RNA pyrophosphohydrolase OS=Wolbachia pipientis wMel GN=rppH PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 3.542e-28 Identity = 61/150 (40.67%), Postives = 89/150 (59.33%), Query Frame = 3 Query: 201 YRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 650 YR VGI L N F R + WQMPQGG+D+ E+ + AALREL EE G + +V+ + W+ Y+ P EV + W G + GQ Q+WFL+KF G++E+I++ + + PEF EW+W + ++ A+ FKK VYK V F+ Sbjct: 8 YRPCVGIMLFNRQGHAFIGKRFESDSYWQMPQGGVDDGEELEQAALRELLEEVGTNKVKVITKSKDWIYYNLPEEV---IPICWNGKYSGQKQRWFLMKFCGEDEDIDI--NYTGHPEFKEWRWQGIDSLVASAISFKKEVYKTVIEEFS 152
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_RHOPA (RNA pyrophosphohydrolase OS=Rhodopseudomonas palustris GN=rppH PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 3.542e-28 Identity = 70/157 (44.59%), Postives = 87/157 (55.41%), Query Frame = 3 Query: 201 YRRNVGICLINSSKKIFAASR------LDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLL-GDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 650 YR VG+ LIN +F R +D WQMPQGG+D ED AA REL EET V+S E LAEVP WL YD P V + W G ++GQ QKWF +FTG + EIN++ K EF W+W + E V FK+PVY+ V F+ Sbjct: 9 YRTCVGVMLINREGLVFIGRRAGGIEHVDDTHVWQMPQGGVDPGEDTWKAAKRELYEETSVNSVEKLAEVPDWLIYDIPRTVAGR---AWKGRYRGQRQKWFAARFTGADSEINVVHPGGGHKAEFTSWRWEPMHNLPELIVPFKRPVYERVVKEFS 162
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_BRASO (RNA pyrophosphohydrolase OS=Bradyrhizobium sp. (strain ORS278) GN=rppH PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 3.542e-28 Identity = 72/157 (45.86%), Postives = 88/157 (56.05%), Query Frame = 3 Query: 201 YRRNVGICLINSSKKIFAASR------LDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINL--LGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 647 YR VGI LINS +F R +D WQMPQGG+D ED AA REL EET V S E LAE+ WLTYD P V + W G ++GQ QKWF L+FTGK+ EI++ G K EF W+W + + V FK+PVY+ V F Sbjct: 9 YRTCVGIALINSEGLVFIGRRAGGIEHVDDTHVWQMPQGGVDPGEDAWEAAKRELYEETSVRSVEKLAEIDDWLTYDIPRTVAGR---AWKGRYRGQRQKWFALRFTGKDSEIDVEHPGGGHHKAEFITWRWEPLQNLPTLIVPFKRPVYERVAKEF 162
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_BRAJA (RNA pyrophosphohydrolase OS=Bradyrhizobium japonicum GN=rppH PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 1.031e-27 Identity = 68/157 (43.31%), Postives = 87/157 (55.41%), Query Frame = 3 Query: 201 YRRNVGICLINSSKKIFAASR------LDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLG-DKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 650 YR VG+ LIN+ +F R +D WQMPQGG+D ED AA REL EET V S E L EVP WL YD P V + W G ++GQ QKWF ++FTGK+ EIN+ K EF W+W + + + FK+PVY+ V F+ Sbjct: 9 YRTCVGVMLINAKGLVFIGRRAGGIEHIDDTHVWQMPQGGVDPGEDTWAAAKRELYEETSVRSVERLGEVPDWLIYDIPRTVAGR---AWKGRYRGQRQKWFAVRFTGKDSEINVENPGGGHKAEFVSWRWEPMKNLPGLIIPFKRPVYERVVKEFS 162
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_BRASB (RNA pyrophosphohydrolase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rppH PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.346e-27 Identity = 71/157 (45.22%), Postives = 87/157 (55.41%), Query Frame = 3 Query: 201 YRRNVGICLINSSKKIFAASR------LDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINL--LGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 647 YR VGI LINS +F R +D WQMPQGG+D ED AA REL EET V S E LAE+ WLTYD P V + W G ++GQ QKWF L+FTG + EI++ G K EF W+W + + V FK+PVY+ V F Sbjct: 9 YRTCVGIALINSEGLVFIGRRAGGIEHVDDAHVWQMPQGGVDPGEDAWEAAKRELYEETSVRSVEKLAEIDDWLTYDIPRTVAGR---AWKGRYRGQRQKWFALRFTGTDTEIDVERPGGGVHKAEFISWRWEPMQNLPTLIVPFKRPVYERVVKEF 162
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_NITSB (RNA pyrophosphohydrolase OS=Nitratiruptor sp. (strain SB155-2) GN=rppH PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.758e-27 Identity = 66/153 (43.14%), Postives = 98/153 (64.05%), Query Frame = 3 Query: 201 YRRNVGICLINSS--KKI--FAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 647 YR NV +++S+ KK+ F A+R D+PDSWQ PQGGID+ E PK A LRELKEE G E++AE P W++YDFP ++ +K+ + GQ QK+FL+K E +I+L +++PEF ++K++ + + FK+PVYK+V F Sbjct: 6 YRPNVAAIVLSSNYPKKVEFFIAARSDVPDSWQFPQGGIDKGESPKEALLRELKEEIGTDKIEIIAEFPEWVSYDFPKKIAKKMY-----PYDGQTQKYFLVKLK-PEAKIDL---DTKEPEFNDYKFVPYKDLFHYVTFFKRPVYKKVLEYF 149
BLAST of CK935896 vs. ExPASy Swiss-Prot
Match: RPPH_OLICO (RNA pyrophosphohydrolase OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rppH PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.296e-27 Identity = 65/156 (41.67%), Postives = 84/156 (53.85%), Query Frame = 3 Query: 201 YRRNVGICLINSSKKIFAASR------LDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 650 YR VG+ L+N +F R +D WQMPQGGID ED AA REL EET S E LAE W TYD P + + W G ++GQ QKWF ++FTG + EIN+ K EF +W+W + + V FK+PVY+ V F+ Sbjct: 9 YRSCVGMMLLNPKGLVFIGRRVGGTELIDPAHVWQMPQGGIDPGEDYWEAAQRELLEETNARSIEKLAEATDWFTYDIPRMIAGR---SWKGRYRGQRQKWFAIRFTGDDSEINVASPAGHKAEFVDWRWEPMQNLPNLVVPFKRPVYERVVKEFS 161 The following BLAST results are available for this feature:
BLAST of CK935896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 325
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Sequences
The
following sequences are available for this feature:
EST sequence >CK935896 ID=CK935896; Name=CK935896; organism=Citrus sinensis; type=EST; length=841bpback to top |