EY756595

Overview
NameEY756595
Unique NameEY756595
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY756595 vs. ExPASy Swiss-Prot
Match: NUDC3_MOUSE (NudC domain-containing protein 3 OS=Mus musculus GN=Nudcd3 PE=2 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 1.149e-14
Identity = 48/171 (28.07%), Postives = 87/171 (50.88%), Query Frame = 2 
Query:  233 KAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVPVPAGT-KSRFVLCEIKKNHLKVGL---KGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQE 733
            K PP  P++       + P+  NG   ENY W+Q   ++ V VPVP    K + V   +    ++V +    G+  +++G+L   +  +   WS+E  + V + L+K  +  WW  +++G   ID  K+  E S ++ +D E ++ ++++ FD  QK  G P S E++  E
Sbjct:  165 KDPPVLPRIQEQFQ--KNPDSYNGAIRENYIWSQDYTDLEVRVPVPKHVMKGKQVSVALSSGTIRVAMVEENGERVLMEGKLTHKINTESSLWSLEPGRCVLVNLSKVGEY-WWSAILEGEEPIDIDKINKERS-MATVDEEEQAVLDRLTFDYHQKLQGKPQSHELKVHE 331
The following BLAST results are available for this feature:
BLAST of EY756595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
NUDC3_MOUSE1.149e-1428.07NudC domain-containing protein 3 OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-D06-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756595 ID=EY756595; Name=EY756595; organism=Citrus sinensis; type=EST; length=922bp
CCACGCGTCCGAGGCGTTCGAGTTTGTGGCTAAAGAGAGCGATTTCCTGA
CGAAGGACGCTGCCGAGAAGCAGATCGTGGCGGCCATGCGAGCGGCCAAG
GAGAAGAGTAGTAATACTAAGAAGCAGCCGCAGCCCCAGTCGCCGCACCA
GGAGGAGGTTAAGGCTAAGAAAATGAAGGAAGAGAAGAAGGAGGAGGAGA
AATTCGAGGATTTGCCGACGATGAAGGTGCAGAAAGCTCCGCCGCCGGAG
CCTCAATTGGATGCCAATGGCAATCCTGCTAGAGCTCCAAATAAAGGCAA
TGGTCTTGATTTGGAGAATTACTCCTGGACACAAATCCTGCAAGAGGTGA
CTGTCAGTGTTCCGGTTCCTGCTGGTACAAAATCAAGGTTTGTTTTATGT
GAGATAAAGAAGAACCATCTTAAAGTTGGACTCAAGGGGCAGCCTCCCAT
AATTGATGGGGAGCTTCATATGGCCGTTAAGCCTGATGATTGTTATTGGA
GCATAGAGGACCAGAAAACTGTTTCTATTCTTTTGACCAAGCAGAATCAG
ATGGAGTGGTGGAAGTGTCTGATAAAAGGAGGCCCTGAAATTGACACTCA
GAAAGTTGAACCTGAGAACAGTAAATTATCTGACCTGGATCCAGAGACTA
GGTCGACTGTTGAAAAGATGATGTTTGACCAGAGGCAAAAGTCCATGGGC
CTGCCGAGCAGCGACGAGATGCAGAAACAGGAGAATTTTGAAGAATTCAT
GGCTGAGCATCCAGAGATGGACTTCTCTAGAGCCAGATCTCATAATAGTC
TCCTTATTAGGATGTGCAGTGGATGCACGTCAAAAGTTCTAGTGGATTTC
CAGTTTTGTTTGCAGCCCCGCAGCTTTCTATAGATGGTTGATTTTGTTAT
ATTTGTAACAGGATTGGACATG
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