GE213145

Overview
NameGE213145
Unique NameGE213145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_CLOCE (S-adenosylmethionine synthetase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=metK PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.759e-44
Identity = 88/158 (55.70%), Postives = 116/158 (73.42%), Query Frame = -1
Query:  262 LDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 735
            LDE T + +NP+GRFV+GGP GD+GLTGRKII+DTY            GKDPTKVDRS AY  R  AK+IVA+G+AR+C VQ++YAIGV +P+SV VD++GT  IP+++I ++V + FD RP  +   L+L+R     + KTAAYGHFGRDD +F+WE
Sbjct:  228 LDEGTKYFINPTGRFVVGGPQGDSGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVASGIARKCEVQLAYAIGVAKPVSVLVDTFGTAVIPEEKISELVNKHFDLRPAAIINKLNLRR---PIYRKTAAYGHFGRDDAEFSWE 382          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_GEOSM (S-adenosylmethionine synthetase OS=Geobacter sp. (strain M21) GN=metK PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.298e-44
Identity = 93/158 (58.86%), Postives = 112/158 (70.89%), Query Frame = -1
Query:  262 LDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 735
            +D KT F +NP+GRFVIGGP GD GLTGRKII+D+Y            GKDP+KVDRS AY+ R  AK++VA+G+  RC VQV+YAIGV EP+SV VD  GTGKIP K I +IV+E FD RP  +   LDL R     + KTAAYGHFGR+ P+FTWE
Sbjct:  221 MDSKTKFLINPTGRFVIGGPMGDCGLTGRKIIVDSYGGHGAHGGGAFSGKDPSKVDRSAAYMGRYVAKNLVASGVCERCEVQVAYAIGVAEPVSVMVDCNGTGKIPSKRISEIVREVFDMRPRAIIEQLDLLR---PIYRKTAAYGHFGRELPEFTWE 375          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_CHRVO (S-adenosylmethionine synthetase OS=Chromobacterium violaceum GN=metK PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.298e-44
Identity = 92/161 (57.14%), Postives = 116/161 (72.05%), Query Frame = -1
Query:  262 PRYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 744
            P  +  +T F +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLAR+C +QVSYAIGV EP S+ VD++GT KIP+++I+++VK+ FD RP  +   LDL R   G   KTAAYGHFGR++P+F+WE
Sbjct:  218 PEMITPETKFLINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLARQCQIQVSYAIGVAEPTSIAVDTFGTNKIPNEKIVELVKKHFDLRPKGIIQMLDLLRPIYG---KTAAYGHFGREEPEFSWE 375          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_CELJU (S-adenosylmethionine synthetase OS=Cellvibrio japonicus (strain Ueda107) GN=metK PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.298e-44
Identity = 89/159 (55.97%), Postives = 116/159 (72.96%), Query Frame = -1
Query:  262 YLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 738
            +L + T +H+NP+G+F+IGGP GD GLTGRKII+D+Y            GKDP+KVDRS AY  R  AK+IVA GLA +C +QVSYAIGV EP S+ ++++GTGK+PD EI+K+V+E FD RP  +   L+LKR     + +TAAYGHFGR+ PDFTWE
Sbjct:  217 WLHKDTQYHINPTGQFIIGGPVGDCGLTGRKIIVDSYGGMARHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLADKCEIQVSYAIGVAEPTSISINTFGTGKLPDAEIIKLVREHFDLRPRGLIEMLNLKR---PIYRQTAAYGHFGRELPDFTWE 372          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_CLOPS (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain SM101 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.001e-44
Identity = 90/158 (56.96%), Postives = 114/158 (72.15%), Query Frame = -1
Query:  262 LDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 735
            LDE T +++NP+GRFVIGGP GDAGLTGRKII+DTY            GKDPTKVDRS AY  R  AK++VA G+A +  VQV+YAIGV +P+S+ VD++GTGKI D+EI+ I+ + FD RPG +  +LDL+R     + +TAAYGHFGR D D  WE
Sbjct:  225 LDENTKYYINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYGRHGGGAFSGKDPTKVDRSAAYAARWVAKNLVAAGIADKLEVQVAYAIGVAKPVSIIVDTFGTGKISDEEIVNIINKVFDLRPGAIIRDLDLRR---PIYRQTAAYGHFGRTDLDLPWE 379          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_CLOP1 (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.001e-44
Identity = 90/158 (56.96%), Postives = 114/158 (72.15%), Query Frame = -1
Query:  262 LDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 735
            LDE T +++NP+GRFVIGGP GDAGLTGRKII+DTY            GKDPTKVDRS AY  R  AK++VA G+A +  VQV+YAIGV +P+S+ VD++GTGKI D+EI+ I+ + FD RPG +  +LDL+R     + +TAAYGHFGR D D  WE
Sbjct:  225 LDENTKYYINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYGRHGGGAFSGKDPTKVDRSAAYAARWVAKNLVAAGIADKLEVQVAYAIGVAKPVSIIVDTFGTGKISDEEIVNIINKVFDLRPGAIIRDLDLRR---PIYRQTAAYGHFGRTDLDLPWE 379          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_CALS8 (S-adenosylmethionine synthetase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=metK PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.001e-44
Identity = 91/158 (57.59%), Postives = 112/158 (70.89%), Query Frame = -1
Query:  262 LDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 735
            LD+ T  ++NP+GRFVIGGP GD+GLTGRKII+DTY            GKDPTKVDRS  Y  R  AK+IVA GLA++C VQ+SYAIGV  PLS+ VD++GTGKI D++I +IVK  FD RP  +  +LDL+R     + K AAYGHFGR+D D  WE
Sbjct:  227 LDKNTKIYINPTGRFVIGGPQGDSGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSATYAARYVAKNIVAAGLAKKCEVQLSYAIGVARPLSIRVDTFGTGKIDDEKIAEIVKRVFDLRPAAIIRDLDLRR---PIYKKVAAYGHFGREDLDLPWE 381          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_GEOSL (S-adenosylmethionine synthetase OS=Geobacter sulfurreducens GN=metK PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.919e-44
Identity = 92/158 (58.23%), Postives = 112/158 (70.89%), Query Frame = -1
Query:  262 LDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 735
            +D+KT F +NP+GRFVIGGP GD GLTGRKII+D+Y            GKDP+KVDRS AY+ R  AK++VA GL  RC VQV+YAIGV EP+SV VD+ GTGKIP   I +I++E FD RP  +   LDL R     + KTAAYGHFGR+ P+FTWE
Sbjct:  221 MDDKTRFLINPTGRFVIGGPMGDCGLTGRKIIVDSYGGHGAHGGGAFSGKDPSKVDRSAAYMGRYVAKNLVAAGLCERCEVQVAYAIGVAEPVSVMVDTAGTGKIPSARIAEIIREVFDLRPRAIIEQLDLLR---PIYRKTAAYGHFGRELPEFTWE 375          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_TERTT (S-adenosylmethionine synthetase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=metK PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.118e-44
Identity = 91/160 (56.88%), Postives = 114/160 (71.25%), Query Frame = -1
Query:  259 YLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEV 738
            +L   T +H+NP+G+F+IGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLA RC +QVSYAIGV EP S+ V+++GTGKI D +I+++VKE FD RP  +   LDL R     + KTAAYGHFGR+ P+FTWE+
Sbjct:  217 WLHSNTKYHINPTGQFIIGGPVGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLADRCEIQVSYAIGVAEPTSISVNTFGTGKIDDGKIVELVKEHFDLRPRGLIEMLDLMR---PIYRKTAAYGHFGRELPEFTWEI 373          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK1_HUMAN (S-adenosylmethionine synthetase isoform type-1 OS=Homo sapiens GN=MAT1A PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 5.118e-44
Identity = 92/165 (55.76%), Postives = 116/165 (70.30%), Query Frame = -1
Query:  247 RYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPL 741
            +YLDE T++HL PSGRFVIGGP GDAG+TGRKII+DTY            GKD TKVDRS AY  R  AKS+V  GL RR +VQVSYAIGV EPLS+ + +YGT +  ++E+L +V ++FD RPG++  +LDLK+     + KTA YGHFGR   +F WEV + L
Sbjct:  234 KYLDEDTVYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSQKTERELLDVVHKNFDLRPGVIVRDLDLKK---PIYQKTACYGHFGRS--EFPWEVPRKL 393          
The following BLAST results are available for this feature:
BLAST of GE213145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_CLOCE1.759e-4455.70S-adenosylmethionine synthetase OS=Clostridium cel... [more]
METK_GEOSM2.298e-4458.86S-adenosylmethionine synthetase OS=Geobacter sp. (... [more]
METK_CHRVO2.298e-4457.14S-adenosylmethionine synthetase OS=Chromobacterium... [more]
METK_CELJU2.298e-4455.97S-adenosylmethionine synthetase OS=Cellvibrio japo... [more]
METK_CLOPS3.001e-4456.96S-adenosylmethionine synthetase OS=Clostridium per... [more]
METK_CLOP13.001e-4456.96S-adenosylmethionine synthetase OS=Clostridium per... [more]
METK_CALS83.001e-4457.59S-adenosylmethionine synthetase OS=Caldicellulosir... [more]
METK_GEOSL3.919e-4458.23S-adenosylmethionine synthetase OS=Geobacter sulfu... [more]
METK_TERTT5.118e-4456.88S-adenosylmethionine synthetase OS=Teredinibacter ... [more]
METK1_HUMAN5.118e-4455.76S-adenosylmethionine synthetase isoform type-1 OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC8 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213145 ID=GE213145; Name=GE213145; organism=Citrus sinensis; type=EST; length=759bp
ATTTCGAGCGGCCGCCCGGGCAGGTGCATTAAACCAAAACCAAAAAAGAA
GTGGGGAAAGAAGAAAAAGAAAGGAATTGAATGGGGAACATGTATGAGTT
CTGAACACAGGAGATTTGCTTAGTATTACAAAGCAGCAGCAAGATAATAT
TCAAATTATTCATCCACTACCAATAGAAGCAAACTTGAACAGCAGGGATA
GTTTTCACTTTTCAACTCAAATTTAAGCTTGAGGCTTTTCCCACTTGAGG
GGCTTCACAACTTCCCAAGTGAAGTCTGGGTCATCCCTGCCAAAGTGTCC
ATAGGCAGCAGTCTTCAAGAACCTGCCATTACCGCCCCTTTTGAGATCCA
AATTGATGGTCATCATTCCTGGCCTGAAATCAAAGCTTTCCTTCACAATT
TTGAGGATCTCCTTGTCAGGAATCTTGCCGGTTCCATATGAGTCCACAAA
AACAGACAATGGCTCAGGCACACCAATGGCATAGGAGACTTGGACAATGC
ACCTGCGAGCAAGCCCGTTTGCAACAATGCTCTTAGCAGCCTGCCTAACA
ATGTATGCACCACTCCTATCCACCTTAGTAGGGTCTTTTCCAGAGAAAGC
ACCGCCACCATGGGCTCCCCAGCCACCATAAGTGTCGATGATGATCTTAC
GTCCAGTGAGACCAGCATCACCATGAGGCCCACCAATGACAAAACGACCT
GATGGATTAAGGTGGAAGATGGTCTTCTCATCAAGGTACCTCGGCCGCGA
CCACGCTAA
back to top