GE213145

Overview
NameGE213145
Unique NameGE213145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_NEIG2 (S-adenosylmethionine synthetase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=metK PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.945e-43
Identity = 89/161 (55.28%), Postives = 114/161 (70.81%), Query Frame = -1
Query:  262 PRYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 744
            P  L ++T + +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLA +C +QVSYAIGV EP S+ +D++GTGKI +++++ +V E FD RP  +   LDL R   G   K+AAYGHFGR++P+FTWE
Sbjct:  218 PELLTDETKYLINPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYACRYVAKNIVAAGLATQCQIQVSYAIGVAEPTSISIDTFGTGKISEEKLIALVCEHFDLRPKGIVQMLDLLRPIYG---KSAAYGHFGREEPEFTWE 375          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_NEIG1 (S-adenosylmethionine synthetase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=metK PE=3 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.945e-43
Identity = 89/161 (55.28%), Postives = 114/161 (70.81%), Query Frame = -1
Query:  262 PRYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 744
            P  L ++T + +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLA +C +QVSYAIGV EP S+ +D++GTGKI +++++ +V E FD RP  +   LDL R   G   K+AAYGHFGR++P+FTWE
Sbjct:  218 PELLTDETKYLINPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYACRYVAKNIVAAGLATQCQIQVSYAIGVAEPTSISIDTFGTGKISEEKLIALVCEHFDLRPKGIVQMLDLLRPIYG---KSAAYGHFGREEPEFTWE 375          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_LARHH (S-adenosylmethionine synthetase OS=Laribacter hongkongensis (strain HLHK9) GN=metK PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.540e-43
Identity = 90/158 (56.96%), Postives = 113/158 (71.52%), Query Frame = -1
Query:  262 LDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 735
            L  +T F +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLAR+C +QVSYAIG+ EP S+ VD++GT  IP+++I+++VK  FD RP  +   LDL R     + KTAAYGHFGR++P+FTWE
Sbjct:  221 LTAETKFLINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLARQCQIQVSYAIGIAEPTSISVDTFGTNAIPNEKIVELVKRHFDLRPKGIIQMLDLLR---PIYTKTAAYGHFGREEPEFTWE 375          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_SACD2 (S-adenosylmethionine synthetase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=metK PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.318e-43
Identity = 90/159 (56.60%), Postives = 111/159 (69.81%), Query Frame = -1
Query:  262 YLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 738
            +L   T +H+NP+G+F+IGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLA RC +QVSYAIGV EP S+ V+++GTG I D EI K+V + FD RP  +   LDL R     + KTAAYGHFGR++P+FTWE
Sbjct:  217 WLHADTKYHINPTGQFIIGGPVGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRCEIQVSYAIGVAEPTSISVNTFGTGSIADSEISKLVAQHFDLRPRGIIEMLDLLR---PIYRKTAAYGHFGREEPEFTWE 372          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_MYXXD (S-adenosylmethionine synthetase OS=Myxococcus xanthus (strain DK 1622) GN=metK PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.318e-43
Identity = 90/166 (54.22%), Postives = 117/166 (70.48%), Query Frame = -1
Query:  244 RYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 741
            + +D KT F +NP+GRFV+GGP GD+GLTGRKII+DTY            GKDP+KVDRS AY+ R  AK++VA GLARRC VQVSYAIGV EP+SV V+++GT  +P++ I   V+++F  RP  +T  L+L R     + KTAAYGHFGR + +FTWE V+  K
Sbjct:  213 KLIDNKTKFFINPTGRFVVGGPMGDSGLTGRKIIVDTYGGMGRHGGGAFSGKDPSKVDRSAAYMGRHIAKTVVAAGLARRCEVQVSYAIGVAEPVSVMVETFGTATVPEERIALAVRKTFGLRPREITEYLNLLR---PIYQKTAAYGHFGRTEKEFTWERVEEKK 375          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_MAGSM (S-adenosylmethionine synthetase OS=Magnetococcus sp. (strain MC-1) GN=metK PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.318e-43
Identity = 89/158 (56.33%), Postives = 114/158 (72.15%), Query Frame = -1
Query:  262 LDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 735
            L E T + +NP+GRFVIGGP GDAG+TGRKII+DTY            GKDP+KVDRS AY+ R  AK+IVA GLA +C +QV+YAIGV +P+SV VD++GTGK+ D+ I ++VK+ FD RP  +   LDL R     + K+AAYGHFGR+ P+FTWE
Sbjct:  221 LHEGTQYFINPTGRFVIGGPVGDAGVTGRKIIVDTYGGMGSHGGGAFSGKDPSKVDRSSAYMGRYVAKNIVAAGLAEKCEIQVAYAIGVSQPMSVMVDTFGTGKLDDEAITELVKKHFDLRPKAIVQQLDLLR---PIYKKSAAYGHFGRELPEFTWE 375          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_LEIIN (S-adenosylmethionine synthetase OS=Leishmania infantum GN=METK PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 3.318e-43
Identity = 94/167 (56.29%), Postives = 116/167 (69.46%), Query Frame = -1
Query:  247 LDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDP----DFTWEVVKPL 735
            LD +T + LNPSGRFV GGPHGDAGLTGRKII+DTY            GKDP+KVDRS AY  R  AKSIVA GLARRC+VQ++YAIGV EPLS+ V++YGTGK  D ++L+IVK++F  RP  +   L+L+R     +  T+ +GHFGR D      FTWEV K +
Sbjct:  227 LDAETKYWLNPSGRFVRGGPHGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPSKVDRSAAYAARWIAKSIVAGGLARRCLVQLAYAIGVAEPLSMHVETYGTGKYDDAKLLEIVKQNFKLRPYDIIQELNLRR---PIYYDTSRFGHFGRKDELGTGGFTWEVPKKM 390          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_DECAR (S-adenosylmethionine synthetase OS=Dechloromonas aromatica (strain RCB) GN=metK PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.318e-43
Identity = 87/150 (58.00%), Postives = 108/150 (72.00%), Query Frame = -1
Query:  262 LNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 711
            +NP+GRFV+GGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLA RC+VQVSYAIGV EP S+ V++YGTGK+ ++ +  +V++ FD RP  +   LDL R     + KTAAYGHFGRD+P+FTWE
Sbjct:  227 VNPTGRFVVGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYATRYVAKNIVAAGLASRCLVQVSYAIGVAEPTSIMVETYGTGKVSNETLTALVRKHFDLRPKGIVNMLDLLR---PIYQKTAAYGHFGRDEPEFTWE 373          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_BORPD (S-adenosylmethionine synthetase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=metK PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.318e-43
Identity = 93/165 (56.36%), Postives = 116/165 (70.30%), Query Frame = -1
Query:  235 KTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVV-KPLKWEK 726
            +T F +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK++VA GLAR+C VQVSYAIGV EP+++ V + GTG IPD++I K+V+E FD RP  +   LDL R     + KTAAYGHFGR +P+F+WE   K L+ +K
Sbjct:  224 RTKFLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGACPHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLARQCQVQVSYAIGVAEPINITVYTEGTGVIPDEQIAKLVREHFDLRPKGIVNMLDLLR---PIYAKTAAYGHFGRAEPEFSWEATDKALELKK 385          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK3_CAEEL (Probable S-adenosylmethionine synthetase 3 OS=Caenorhabditis elegans GN=sams-3 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.318e-43
Identity = 92/164 (56.10%), Postives = 115/164 (70.12%), Query Frame = -1
Query:  244 LDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 735
            +D+KTI+HLNP G F+IGGP GDAGLTGRKII+DTY            GKDPTKVDRS AY  R  AKS+V +GL RRC+VQVSYAIGV +PLSV V S+GT  + + E+LKIV ++FD RPGM+  +LDLK+     +  TA  GHFG +  +F WE  + L+
Sbjct:  224 IDDKTIYHLNPCGSFIIGGPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVKSGLCRRCLVQVSYAIGVAKPLSVMVFSFGTSALNEGELLKIVNDNFDLRPGMIIKDLDLKK---PIYEPTAENGHFGHN--EFPWEQPRHLQ 382          
The following BLAST results are available for this feature:
BLAST of GE213145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_NEIG21.945e-4355.28S-adenosylmethionine synthetase OS=Neisseria gonor... [more]
METK_NEIG11.945e-4355.28S-adenosylmethionine synthetase OS=Neisseria gonor... [more]
METK_LARHH2.540e-4356.96S-adenosylmethionine synthetase OS=Laribacter hong... [more]
METK_SACD23.318e-4356.60S-adenosylmethionine synthetase OS=Saccharophagus ... [more]
METK_MYXXD3.318e-4354.22S-adenosylmethionine synthetase OS=Myxococcus xant... [more]
METK_MAGSM3.318e-4356.33S-adenosylmethionine synthetase OS=Magnetococcus s... [more]
METK_LEIIN3.318e-4356.29S-adenosylmethionine synthetase OS=Leishmania infa... [more]
METK_DECAR3.318e-4358.00S-adenosylmethionine synthetase OS=Dechloromonas a... [more]
METK_BORPD3.318e-4356.36S-adenosylmethionine synthetase OS=Bordetella petr... [more]
METK3_CAEEL3.318e-4356.10Probable S-adenosylmethionine synthetase 3 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionC8 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213145 ID=GE213145; Name=GE213145; organism=Citrus sinensis; type=EST; length=759bp
ATTTCGAGCGGCCGCCCGGGCAGGTGCATTAAACCAAAACCAAAAAAGAA
GTGGGGAAAGAAGAAAAAGAAAGGAATTGAATGGGGAACATGTATGAGTT
CTGAACACAGGAGATTTGCTTAGTATTACAAAGCAGCAGCAAGATAATAT
TCAAATTATTCATCCACTACCAATAGAAGCAAACTTGAACAGCAGGGATA
GTTTTCACTTTTCAACTCAAATTTAAGCTTGAGGCTTTTCCCACTTGAGG
GGCTTCACAACTTCCCAAGTGAAGTCTGGGTCATCCCTGCCAAAGTGTCC
ATAGGCAGCAGTCTTCAAGAACCTGCCATTACCGCCCCTTTTGAGATCCA
AATTGATGGTCATCATTCCTGGCCTGAAATCAAAGCTTTCCTTCACAATT
TTGAGGATCTCCTTGTCAGGAATCTTGCCGGTTCCATATGAGTCCACAAA
AACAGACAATGGCTCAGGCACACCAATGGCATAGGAGACTTGGACAATGC
ACCTGCGAGCAAGCCCGTTTGCAACAATGCTCTTAGCAGCCTGCCTAACA
ATGTATGCACCACTCCTATCCACCTTAGTAGGGTCTTTTCCAGAGAAAGC
ACCGCCACCATGGGCTCCCCAGCCACCATAAGTGTCGATGATGATCTTAC
GTCCAGTGAGACCAGCATCACCATGAGGCCCACCAATGACAAAACGACCT
GATGGATTAAGGTGGAAGATGGTCTTCTCATCAAGGTACCTCGGCCGCGA
CCACGCTAA
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