GE213145

Overview
NameGE213145
Unique NameGE213145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_SCHPO (S-adenosylmethionine synthetase OS=Schizosaccharomyces pombe GN=sam1 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.333e-43
Identity = 90/165 (54.55%), Postives = 116/165 (70.30%), Query Frame = -1
Query:  241 LDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 735
            LDEKT++H+ PSGRFV+GGP GDAGLTGRKII+DTY            GKD +KVDRS AY  R  AKS+VA GLARRC+VQ+SYAIGV EPLS+FV++YGT      E+++I++++FD RPG++  +L L+      +L TA+YGHF   D    WE  K LK+
Sbjct:  223 LDEKTVYHIQPSGRFVVGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYSKVDRSAAYAARWIAKSLVAAGLARRCLVQLSYAIGVAEPLSIFVNTYGTSSKTSAELVEIIRKNFDLRPGVLVKSLKLQ---TPFYLSTASYGHF--TDQSKPWEQPKELKF 382          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_RALSO (S-adenosylmethionine synthetase OS=Ralstonia solanacearum GN=metK PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.333e-43
Identity = 90/161 (55.90%), Postives = 114/161 (70.81%), Query Frame = -1
Query:  262 PRYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 744
            P ++  +T + +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK++VA GLAR+C VQVSYAIGV  P+++ V + GTG IPD++I K+V+E FD RP  +   LDL R   G   KTAAYGHFGR++P+F+WE
Sbjct:  216 PSHMLAETKYLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLARQCQVQVSYAIGVARPINITVYTEGTGVIPDEQIAKLVQEHFDLRPKGIVQMLDLLRPIYG---KTAAYGHFGREEPEFSWE 373          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_NEIMF (S-adenosylmethionine synthetase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=metK PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.333e-43
Identity = 87/158 (55.06%), Postives = 114/158 (72.15%), Query Frame = -1
Query:  262 LDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 735
            L ++T + +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLA +C +QVSYAIGV EP S+ +D++GTGKI +++++ +V+E FD RP  +   LDL R     + K+AAYGHFGR++P+FTWE
Sbjct:  221 LTDETKYLINPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYACRYVAKNIVAAGLATQCQIQVSYAIGVAEPTSISIDTFGTGKISEEKLITLVREHFDLRPKGIVQMLDLLR---PIYSKSAAYGHFGREEPEFTWE 375          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_NEIMB (S-adenosylmethionine synthetase OS=Neisseria meningitidis serogroup B GN=metK PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.333e-43
Identity = 87/158 (55.06%), Postives = 114/158 (72.15%), Query Frame = -1
Query:  262 LDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 735
            L ++T + +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLA +C +QVSYAIGV EP S+ +D++GTGKI +++++ +V+E FD RP  +   LDL R     + K+AAYGHFGR++P+FTWE
Sbjct:  221 LTDETKYLINPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYACRYVAKNIVAAGLATQCQIQVSYAIGVAEPTSISIDTFGTGKISEEKLIALVREHFDLRPKGIVQMLDLLR---PIYSKSAAYGHFGREEPEFTWE 375          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_NEIMA (S-adenosylmethionine synthetase OS=Neisseria meningitidis serogroup A GN=metK PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.333e-43
Identity = 87/158 (55.06%), Postives = 114/158 (72.15%), Query Frame = -1
Query:  262 LDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 735
            L ++T + +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLA +C +QVSYAIGV EP S+ +D++GTGKI +++++ +V+E FD RP  +   LDL R     + K+AAYGHFGR++P+FTWE
Sbjct:  221 LTDETKYLINPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYACRYVAKNIVAAGLATQCQIQVSYAIGVAEPTSISIDTFGTGKISEEKLITLVREHFDLRPKGIVQMLDLLR---PIYSKSAAYGHFGREEPEFTWE 375          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_NEIM0 (S-adenosylmethionine synthetase OS=Neisseria meningitidis serogroup C (strain 053442) GN=metK PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.333e-43
Identity = 87/158 (55.06%), Postives = 114/158 (72.15%), Query Frame = -1
Query:  262 LDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 735
            L ++T + +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLA +C +QVSYAIGV EP S+ +D++GTGKI +++++ +V+E FD RP  +   LDL R     + K+AAYGHFGR++P+FTWE
Sbjct:  221 LTDETKYLINPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYACRYVAKNIVAAGLATQCQIQVSYAIGVAEPTSISIDTFGTGKISEEKLITLVREHFDLRPKGIVQMLDLLR---PIYSKSAAYGHFGREEPEFTWE 375          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_RALEH (S-adenosylmethionine synthetase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=metK PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.659e-43
Identity = 90/161 (55.90%), Postives = 115/161 (71.43%), Query Frame = -1
Query:  262 PRYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 744
            P  + ++T + +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK++VA+GLAR+C VQVSYAIGV  P++V V + GTGKIPD +I ++V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  216 PAEMLKETKYLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGASPHGGGAFSGKDPSKVDRSAAYAARYVAKNVVASGLARQCQVQVSYAIGVARPINVTVYTEGTGKIPDAKIAELVQEHFDLRPKGIVQMLDLLR---PIYEKTAAYGHFGREEPEFSWE 373          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_GEOMG (S-adenosylmethionine synthetase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=metK PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.391e-43
Identity = 90/158 (56.96%), Postives = 111/158 (70.25%), Query Frame = -1
Query:  262 LDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 735
            +DE+T   +NP+GRFV+GGP GD GLTGRKII+D+Y            GKDP+KVDRS AY+ R  AK++VA GL  +C VQV+YAIGV EP+SV VD+ GTGKI  K I +IV+E FD RP  +   LDL R     + KTAAYGHFGR+ P+FTWE
Sbjct:  221 MDERTRMLINPTGRFVVGGPMGDCGLTGRKIIVDSYGGHGAHGGGAFSGKDPSKVDRSAAYMGRYVAKNLVAAGLCEKCEVQVAYAIGVAEPVSVMVDTAGTGKISSKRIAEIVREVFDLRPRAIIEQLDLLR---PIYRKTAAYGHFGRELPEFTWE 375          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK4_CAEEL (Probable S-adenosylmethionine synthetase 4 OS=Caenorhabditis elegans GN=sams-4 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.391e-43
Identity = 92/164 (56.10%), Postives = 113/164 (68.90%), Query Frame = -1
Query:  244 LDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 735
            +D+KTI+HLNP G F+IGGP GDAGLTGRKII+DTY            GKDPTKVDRS AY  R  AKS+V  GL RRC+VQVSYAIGV +PLSV V S+GT  + ++++L IV ++FD RPG +  NLDLKR     +  TA  GHFG +  +F WE  + LK
Sbjct:  224 IDDKTIYHLNPCGSFIIGGPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAKPLSVMVFSFGTSALSEEDLLTIVNDNFDLRPGKIIKNLDLKR---PIYEPTAENGHFGHN--NFPWEQPRNLK 382          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_RALPJ (S-adenosylmethionine synthetase OS=Ralstonia pickettii (strain 12J) GN=metK PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.653e-43
Identity = 89/161 (55.28%), Postives = 114/161 (70.81%), Query Frame = -1
Query:  262 PRYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 744
            P ++  +T + +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK++VA GLAR+C VQVSYAIGV  P+++ V + GTG IPD++I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  216 PSHMLAETKYLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLARQCQVQVSYAIGVARPINITVYTEGTGVIPDEQIAKLVQEHFDLRPKGIVQMLDLLR---PVYEKTAAYGHFGREEPEFSWE 373          
The following BLAST results are available for this feature:
BLAST of GE213145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_SCHPO4.333e-4354.55S-adenosylmethionine synthetase OS=Schizosaccharom... [more]
METK_RALSO4.333e-4355.90S-adenosylmethionine synthetase OS=Ralstonia solan... [more]
METK_NEIMF4.333e-4355.06S-adenosylmethionine synthetase OS=Neisseria menin... [more]
METK_NEIMB4.333e-4355.06S-adenosylmethionine synthetase OS=Neisseria menin... [more]
METK_NEIMA4.333e-4355.06S-adenosylmethionine synthetase OS=Neisseria menin... [more]
METK_NEIM04.333e-4355.06S-adenosylmethionine synthetase OS=Neisseria menin... [more]
METK_RALEH5.659e-4355.90S-adenosylmethionine synthetase OS=Ralstonia eutro... [more]
METK_GEOMG7.391e-4356.96S-adenosylmethionine synthetase OS=Geobacter metal... [more]
METK4_CAEEL7.391e-4356.10Probable S-adenosylmethionine synthetase 4 OS=Caen... [more]
METK_RALPJ9.653e-4355.28S-adenosylmethionine synthetase OS=Ralstonia picke... [more]

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Properties
Property NameValue
Genbank descriptionC8 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213145 ID=GE213145; Name=GE213145; organism=Citrus sinensis; type=EST; length=759bp
ATTTCGAGCGGCCGCCCGGGCAGGTGCATTAAACCAAAACCAAAAAAGAA
GTGGGGAAAGAAGAAAAAGAAAGGAATTGAATGGGGAACATGTATGAGTT
CTGAACACAGGAGATTTGCTTAGTATTACAAAGCAGCAGCAAGATAATAT
TCAAATTATTCATCCACTACCAATAGAAGCAAACTTGAACAGCAGGGATA
GTTTTCACTTTTCAACTCAAATTTAAGCTTGAGGCTTTTCCCACTTGAGG
GGCTTCACAACTTCCCAAGTGAAGTCTGGGTCATCCCTGCCAAAGTGTCC
ATAGGCAGCAGTCTTCAAGAACCTGCCATTACCGCCCCTTTTGAGATCCA
AATTGATGGTCATCATTCCTGGCCTGAAATCAAAGCTTTCCTTCACAATT
TTGAGGATCTCCTTGTCAGGAATCTTGCCGGTTCCATATGAGTCCACAAA
AACAGACAATGGCTCAGGCACACCAATGGCATAGGAGACTTGGACAATGC
ACCTGCGAGCAAGCCCGTTTGCAACAATGCTCTTAGCAGCCTGCCTAACA
ATGTATGCACCACTCCTATCCACCTTAGTAGGGTCTTTTCCAGAGAAAGC
ACCGCCACCATGGGCTCCCCAGCCACCATAAGTGTCGATGATGATCTTAC
GTCCAGTGAGACCAGCATCACCATGAGGCCCACCAATGACAAAACGACCT
GATGGATTAAGGTGGAAGATGGTCTTCTCATCAAGGTACCTCGGCCGCGA
CCACGCTAA
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