GE213145

Overview
NameGE213145
Unique NameGE213145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_NITMU (S-adenosylmethionine synthetase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=metK PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.261e-42
Identity = 86/160 (53.75%), Postives = 114/160 (71.25%), Query Frame = -1
Query:  262 RYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 741
            + L  +T + +NP+GRFV+GGP GD GLTGRKII+D+Y            GKDP+KVDRS AY  R  AK++VA G+A RC VQ++YAIGV  P+S+ VD++GTGKIPD +I+K+++  FD RP  +   LDL R     + KTAAYGHFGRD+P+F+WE
Sbjct:  217 KMLSGETRYLINPTGRFVVGGPMGDCGLTGRKIIVDSYGGTAHHGGGAFSGKDPSKVDRSAAYAGRYVAKNLVAAGIASRCEVQMAYAIGVARPVSLMVDTFGTGKIPDDKIVKLIERHFDLRPRGIIHGLDLLR---PIYEKTAAYGHFGRDEPEFSWE 373          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_DESRM (S-adenosylmethionine synthetase OS=Desulfotomaculum reducens (strain MI-1) GN=metK PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.261e-42
Identity = 87/158 (55.06%), Postives = 111/158 (70.25%), Query Frame = -1
Query:  262 LDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 735
            +D+KT F +NP+GRFVIGGPHGDAGLTGRKII+DTY            GKDPTKVDRS AY  R  AK++VA GLA+RC VQ++YAIGV  P+SV V ++GTG + D+ I+ ++   FD RP  +  +L+L+R     + +TAAYGHFGR D D  WE
Sbjct:  228 VDDKTRFLINPTGRFVIGGPHGDAGLTGRKIIVDTYGGSARHGGGAFSGKDPTKVDRSAAYAARYVAKNVVAAGLAKRCEVQLAYAIGVAHPVSVRVQTFGTGAVSDEVIIDLINRHFDLRPAGIIKSLELRR---PIYKQTAAYGHFGRPDLDLPWE 382          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_BACHD (S-adenosylmethionine synthetase OS=Bacillus halodurans GN=metK PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.261e-42
Identity = 85/158 (53.80%), Postives = 114/158 (72.15%), Query Frame = -1
Query:  262 LDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 735
            +DE+T + +NP+GRFVIGGP GDAGLTGRKII+DTY            GKDPTKVDRSGAY  R  AK+IVA GLA +C VQ++YAIGV +P+S+ +D++GTG++ +  ++++V+E FD RP  +   LDL+R     + +TAAYGHFGR D +  WE
Sbjct:  233 IDEETKYFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSGAYAARYVAKNIVAAGLADKCEVQLAYAIGVAKPVSISIDTFGTGQVSEARLVELVREHFDLRPAGIIKMLDLRR---PIYKQTAAYGHFGRTDVELPWE 387          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_SYNFM (S-adenosylmethionine synthetase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=metK PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.647e-42
Identity = 89/170 (52.35%), Postives = 117/170 (68.82%), Query Frame = -1
Query:  244 PRYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE---VVKPLK 744
            P  +D+KT + +N +GRFVIGGP GD GLTGRKII DTY            GKDP+KVDR+ +Y+ R  AK+IVA G+A +  VQV+Y+IGV EP+S+ +D++GTGKIP   I +IV++ F F+P  M   L L R     F KTA YGHFGR+DPDFTWE   +V+P++
Sbjct:  218 PELIDDKTKYFINSTGRFVIGGPMGDCGLTGRKIIADTYGGQGSHGGGCFSGKDPSKVDRTASYMARYVAKNIVAAGVADKVEVQVAYSIGVAEPVSLMIDTFGTGKIPSDRIAEIVRKLFSFKPANMIKQLRLLR---PIFKKTACYGHFGRNDPDFTWEKTDMVEPIR 384          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_PELTS (S-adenosylmethionine synthetase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=metK PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.647e-42
Identity = 85/161 (52.80%), Postives = 110/161 (68.32%), Query Frame = -1
Query:  262 PRYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 744
            P +LD  T F +NP+GRFVIGGP GD GLTGRKII+DTY            GKDPTKVDRS +Y  R  AK+IVA GLA +C  QV+YAIGV  P+S+ VD++GTG++ ++ ++K+VKE FD RP  +   LDL+R     + + + YGHFGR+D D  WE
Sbjct:  225 PEFLDGSTRFFVNPTGRFVIGGPQGDTGLTGRKIIVDTYGGMARHGGGSFSGKDPTKVDRSASYAARYVAKNIVAAGLAEKCEFQVAYAIGVAHPVSMMVDTFGTGRVDEQTLVKLVKEHFDLRPAAIIKELDLRR---PIYRQVSVYGHFGRNDLDLPWE 382          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_LEPCP (S-adenosylmethionine synthetase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=metK PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.647e-42
Identity = 89/159 (55.97%), Postives = 111/159 (69.81%), Query Frame = -1
Query:  262 YLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 738
            ++  +T + +NP+GRFVIGGP GD GLTGRKII+DTY            GKDPTKVDRS AY  R  AK+IVA GLAR+C +QV+YAIGV  P+++ V + GTG IPD EI K+V+  FD RP  +   LDL R     + KTAAYGHFGR++P+FTWE
Sbjct:  224 WITAETQYLINPTGRFVIGGPQGDCGLTGRKIIVDTYGGACPHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLARQCQIQVAYAIGVARPMNITVYTEGTGVIPDAEIAKLVEAHFDLRPKGIIQMLDLLR---PIYQKTAAYGHFGREEPEFTWE 379          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_LACH4 (S-adenosylmethionine synthetase OS=Lactobacillus helveticus (strain DPC 4571) GN=metK PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.647e-42
Identity = 90/160 (56.25%), Postives = 110/160 (68.75%), Query Frame = -1
Query:  262 RYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 741
            RYLDEKT F +NPSGRFVIGGP GD+GLTGRKII+DTY            GKD TKVDRS +Y  R  AK+IVA GLA RC VQ++YAIGV  P+S+ +D+ GTGK+ D  + + V+  FD RP  +   LDL+R     + +TAAYGHFGR D D +WE
Sbjct:  227 RYLDEKTKFLINPSGRFVIGGPKGDSGLTGRKIIVDTYGGYARHGGGAFSGKDSTKVDRSASYAARYVAKNIVAAGLAYRCEVQLAYAIGVAHPVSIMIDTAGTGKVDDDLLTEAVRHVFDLRPAGIIKMLDLRR---PIYEQTAAYGHFGRTDVDLSWE 383          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_GEOTN (S-adenosylmethionine synthetase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=metK PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.647e-42
Identity = 86/158 (54.43%), Postives = 111/158 (70.25%), Query Frame = -1
Query:  262 LDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 735
            LDE T + +NP+GRFVIGGP GDAGLTGRKII+DTY            GKDPTKVDRS AY  R  AK+IVA GLA +C VQ++YAIGV  P+S+ +D++GTGK+ +  ++++V+ +FD RP  +   LDL+R     + +TAAYGHFGR D D  WE
Sbjct:  231 LDENTKYFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADKCEVQLAYAIGVARPVSISIDTFGTGKVSEDVLIEVVRNNFDLRPAGIIKMLDLRR---PIYKQTAAYGHFGRTDVDLPWE 385          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_FRAP2 (S-adenosylmethionine synthetase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=metK PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.647e-42
Identity = 87/160 (54.37%), Postives = 115/160 (71.88%), Query Frame = -1
Query:  256 LDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVV 735
            + + T +H+NP+G F+IGGP GD GLTGRKII+DTY            GKDP+KVDRSGAY+ R  AK++VA GLA +C VQV+YAIGV +P+S+ V+++GTGKI D +I K+V E+FD R G +  NLDL R     + KT+ YGHFGR+ P+FTWE +
Sbjct:  218 ITKDTKYHINPTGVFLIGGPQGDCGLTGRKIIVDTYGGAAHHGGGAFSGKDPSKVDRSGAYMGRYIAKNVVAAGLADKCEVQVAYAIGVAKPVSLMVNTFGTGKISDSKIEKLVSETFDLRVGKIIENLDLLR---PIYRKTSNYGHFGRELPEFTWEKI 374          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_CLOTH (S-adenosylmethionine synthetase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=metK PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.647e-42
Identity = 90/158 (56.96%), Postives = 111/158 (70.25%), Query Frame = -1
Query:  262 LDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 735
            LD KT + +NP+GRFVIGGP GD+GLTGRKII+DTY            GKDPTKVDRS AY  R  AK+IVA GLAR+C VQ++YAIGV  P+SV VD++GTG IP+++I  +V + FD RP  +   LDL+R     + +TAAYGHFGR D D  WE
Sbjct:  228 LDSKTKYLVNPTGRFVIGGPQGDSGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLARKCEVQLAYAIGVARPVSVRVDTFGTGIIPEEKIESLVNKYFDLRPAGIIKTLDLRR---PIYKQTAAYGHFGRTDIDLPWE 382          
The following BLAST results are available for this feature:
BLAST of GE213145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_NITMU1.261e-4253.75S-adenosylmethionine synthetase OS=Nitrosospira mu... [more]
METK_DESRM1.261e-4255.06S-adenosylmethionine synthetase OS=Desulfotomaculu... [more]
METK_BACHD1.261e-4253.80S-adenosylmethionine synthetase OS=Bacillus halodu... [more]
METK_SYNFM1.647e-4252.35S-adenosylmethionine synthetase OS=Syntrophobacter... [more]
METK_PELTS1.647e-4252.80S-adenosylmethionine synthetase OS=Pelotomaculum t... [more]
METK_LEPCP1.647e-4255.97S-adenosylmethionine synthetase OS=Leptothrix chol... [more]
METK_LACH41.647e-4256.25S-adenosylmethionine synthetase OS=Lactobacillus h... [more]
METK_GEOTN1.647e-4254.43S-adenosylmethionine synthetase OS=Geobacillus the... [more]
METK_FRAP21.647e-4254.38S-adenosylmethionine synthetase OS=Francisella phi... [more]
METK_CLOTH1.647e-4256.96S-adenosylmethionine synthetase OS=Clostridium the... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC8 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213145 ID=GE213145; Name=GE213145; organism=Citrus sinensis; type=EST; length=759bp
ATTTCGAGCGGCCGCCCGGGCAGGTGCATTAAACCAAAACCAAAAAAGAA
GTGGGGAAAGAAGAAAAAGAAAGGAATTGAATGGGGAACATGTATGAGTT
CTGAACACAGGAGATTTGCTTAGTATTACAAAGCAGCAGCAAGATAATAT
TCAAATTATTCATCCACTACCAATAGAAGCAAACTTGAACAGCAGGGATA
GTTTTCACTTTTCAACTCAAATTTAAGCTTGAGGCTTTTCCCACTTGAGG
GGCTTCACAACTTCCCAAGTGAAGTCTGGGTCATCCCTGCCAAAGTGTCC
ATAGGCAGCAGTCTTCAAGAACCTGCCATTACCGCCCCTTTTGAGATCCA
AATTGATGGTCATCATTCCTGGCCTGAAATCAAAGCTTTCCTTCACAATT
TTGAGGATCTCCTTGTCAGGAATCTTGCCGGTTCCATATGAGTCCACAAA
AACAGACAATGGCTCAGGCACACCAATGGCATAGGAGACTTGGACAATGC
ACCTGCGAGCAAGCCCGTTTGCAACAATGCTCTTAGCAGCCTGCCTAACA
ATGTATGCACCACTCCTATCCACCTTAGTAGGGTCTTTTCCAGAGAAAGC
ACCGCCACCATGGGCTCCCCAGCCACCATAAGTGTCGATGATGATCTTAC
GTCCAGTGAGACCAGCATCACCATGAGGCCCACCAATGACAAAACGACCT
GATGGATTAAGGTGGAAGATGGTCTTCTCATCAAGGTACCTCGGCCGCGA
CCACGCTAA
back to top