GE213145 | Citrus Genome Database

Overview


Name	GE213145
Unique Name	GE213145
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	759

Libraries


Library Name	Type
BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_BURTA (S-adenosylmethionine synthetase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=metK PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.668e-42
Identity = 88/152 (57.89%), Postives = 109/152 (71.71%), Query Frame = -1

Query:  262 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 717
            F +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D+ I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  226 FLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374

[Close]

BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_BURPS (S-adenosylmethionine synthetase OS=Burkholderia pseudomallei GN=metK PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.668e-42
Identity = 88/152 (57.89%), Postives = 109/152 (71.71%), Query Frame = -1

Query:  262 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 717
            F +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D+ I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  226 FLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374

[Close]

BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_BURPP (S-adenosylmethionine synthetase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=metK PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.668e-42
Identity = 87/152 (57.24%), Postives = 109/152 (71.71%), Query Frame = -1

Query:  262 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 717
            F +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLA RC++QVSYAIGV +P SV V+++GTG++ D  I ++V+E FD RP  +   LDL R     + K+AAYGHFGR++P+FTWE
Sbjct:  226 FLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRCLIQVSYAIGVAQPTSVMVNTFGTGRVSDATITRLVQEHFDLRPKGIIQMLDLLR---PIYEKSAAYGHFGREEPEFTWE 374

[Close]

BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_BURP6 (S-adenosylmethionine synthetase OS=Burkholderia pseudomallei (strain 668) GN=metK PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.668e-42
Identity = 88/152 (57.89%), Postives = 109/152 (71.71%), Query Frame = -1

Query:  262 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 717
            F +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D+ I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  226 FLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374

[Close]

BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_BURP1 (S-adenosylmethionine synthetase OS=Burkholderia pseudomallei (strain 1710b) GN=metK PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.668e-42
Identity = 88/152 (57.89%), Postives = 109/152 (71.71%), Query Frame = -1

Query:  262 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 717
            F +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D+ I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  226 FLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374

[Close]

BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_BURP0 (S-adenosylmethionine synthetase OS=Burkholderia pseudomallei (strain 1106a) GN=metK PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.668e-42
Identity = 88/152 (57.89%), Postives = 109/152 (71.71%), Query Frame = -1

Query:  262 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 717
            F +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D+ I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  226 FLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374

[Close]

BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_BURMS (S-adenosylmethionine synthetase OS=Burkholderia mallei (strain SAVP1) GN=metK PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.668e-42
Identity = 88/152 (57.89%), Postives = 109/152 (71.71%), Query Frame = -1

Query:  262 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 717
            F +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D+ I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  226 FLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374

[Close]

BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_BURMA (S-adenosylmethionine synthetase OS=Burkholderia mallei GN=metK PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.668e-42
Identity = 88/152 (57.89%), Postives = 109/152 (71.71%), Query Frame = -1

Query:  262 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 717
            F +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D+ I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  226 FLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374

[Close]

BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_BURM9 (S-adenosylmethionine synthetase OS=Burkholderia mallei (strain NCTC 10229) GN=metK PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.668e-42
Identity = 88/152 (57.89%), Postives = 109/152 (71.71%), Query Frame = -1

Query:  262 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 717
            F +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D+ I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  226 FLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374

[Close]

BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_BURM7 (S-adenosylmethionine synthetase OS=Burkholderia mallei (strain NCTC 10247) GN=metK PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.668e-42
Identity = 88/152 (57.89%), Postives = 109/152 (71.71%), Query Frame = -1

Query:  262 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 717
            F +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRS AY  R  AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D+ I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  226 FLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374

The following BLAST results are available for this feature:

BLAST of GE213145 vs. ExPASy Swiss-Prot

BLAST of GE213145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
METK_BURTA	3.668e-42	57.89	S-adenosylmethionine synthetase OS=Burkholderia th...	[more]
METK_BURPS	3.668e-42	57.89	S-adenosylmethionine synthetase OS=Burkholderia ps...	[more]
METK_BURPP	3.668e-42	57.24	S-adenosylmethionine synthetase OS=Burkholderia ph...	[more]
METK_BURP6	3.668e-42	57.89	S-adenosylmethionine synthetase OS=Burkholderia ps...	[more]
METK_BURP1	3.668e-42	57.89	S-adenosylmethionine synthetase OS=Burkholderia ps...	[more]
METK_BURP0	3.668e-42	57.89	S-adenosylmethionine synthetase OS=Burkholderia ps...	[more]
METK_BURMS	3.668e-42	57.89	S-adenosylmethionine synthetase OS=Burkholderia ma...	[more]
METK_BURMA	3.668e-42	57.89	S-adenosylmethionine synthetase OS=Burkholderia ma...	[more]
METK_BURM9	3.668e-42	57.89	S-adenosylmethionine synthetase OS=Burkholderia ma...	[more]
METK_BURM7	3.668e-42	57.89	S-adenosylmethionine synthetase OS=Burkholderia ma...	[more]

Pages

Properties


Property Name	Value
Genbank description	C8 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GE213145 ID=GE213145; Name=GE213145; organism=Citrus sinensis; type=EST; length=759bp
ATTTCGAGCGGCCGCCCGGGCAGGTGCATTAAACCAAAACCAAAAAAGAA
GTGGGGAAAGAAGAAAAAGAAAGGAATTGAATGGGGAACATGTATGAGTT
CTGAACACAGGAGATTTGCTTAGTATTACAAAGCAGCAGCAAGATAATAT
TCAAATTATTCATCCACTACCAATAGAAGCAAACTTGAACAGCAGGGATA
GTTTTCACTTTTCAACTCAAATTTAAGCTTGAGGCTTTTCCCACTTGAGG
GGCTTCACAACTTCCCAAGTGAAGTCTGGGTCATCCCTGCCAAAGTGTCC
ATAGGCAGCAGTCTTCAAGAACCTGCCATTACCGCCCCTTTTGAGATCCA
AATTGATGGTCATCATTCCTGGCCTGAAATCAAAGCTTTCCTTCACAATT
TTGAGGATCTCCTTGTCAGGAATCTTGCCGGTTCCATATGAGTCCACAAA
AACAGACAATGGCTCAGGCACACCAATGGCATAGGAGACTTGGACAATGC
ACCTGCGAGCAAGCCCGTTTGCAACAATGCTCTTAGCAGCCTGCCTAACA
ATGTATGCACCACTCCTATCCACCTTAGTAGGGTCTTTTCCAGAGAAAGC
ACCGCCACCATGGGCTCCCCAGCCACCATAAGTGTCGATGATGATCTTAC
GTCCAGTGAGACCAGCATCACCATGAGGCCCACCAATGACAAAACGACCT
GATGGATTAAGGTGGAAGATGGTCTTCTCATCAAGGTACCTCGGCCGCGA
CCACGCTAA