GE213145

Overview
NameGE213145
Unique NameGE213145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:893..1650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK1_PEA (S-adenosylmethionine synthetase 1 (Fragment) OS=Pisum sativum GN=SAMS1 PE=2 SV=2)

HSP 1 Score: 286.189 bits (731), Expect = 1.334e-76
Identity = 141/169 (83.43%), Postives = 150/169 (88.76%), Query Frame = -1
Query:  235 RYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 741
            +YLD KTI HLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDR GAYIVRQAAKSIVA+GLARR IVQ+  AIGVPEPLSVFVD+YGTGKIPD+EILKIVKE+FDFRPGM++INLDL RGGNGRFLKTAAYGHFGR+DPDFTWEVVKPLKWEK
Sbjct:  197 KYLDSKTICHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRRGAYIVRQAAKSIVASGLARRAIVQLLRAIGVPEPLSVFVDTYGTGKIPDREILKIVKETFDFRPGMISINLDLLRGGNGRFLKTAAYGHFGREDPDFTWEVVKPLKWEK 365          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK2_HORVU (S-adenosylmethionine synthetase 2 OS=Hordeum vulgare GN=SAM2 PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.743e-76
Identity = 140/172 (81.40%), Postives = 153/172 (88.95%), Query Frame = -1
Query:  226 RYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 741
            +YLDE TIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYI RQAAKSI+A+GLARRCIVQ+SYAIGVPEPLSVFVDSYGTGKIPD+EILK+VKE+FDFRPGM++INLDLK+GG  RF+KTAAYGHFGRDD DFTWEVVKPLK++K  A
Sbjct:  224 KYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSIIASGLARRCIVQISYAIGVPEPLSVFVDSYGTGKIPDREILKLVKENFDFRPGMISINLDLKKGGK-RFIKTAAYGHFGRDDADFTWEVVKPLKFDKASA 394          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK4_BRAJU (S-adenosylmethionine synthetase 4 OS=Brassica juncea GN=MSAMS4 PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.475e-75
Identity = 138/166 (83.13%), Postives = 146/166 (87.95%), Query Frame = -1
Query:  244 RYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 741
            +YLDE TIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VA GLARRCIVQVSYAIGVPEPLSVFVD+Y TG IPDK+IL ++KE+FDFRPGMM INLDLKRGGN RF KTAAYGHFGRDDPDFTWEV+KPLK
Sbjct:  222 KYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVATGLARRCIVQVSYAIGVPEPLSVFVDTYKTGTIPDKDILVLIKEAFDFRPGMMAINLDLKRGGNFRFQKTAAYGHFGRDDPDFTWEVIKPLK 387          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK3_ARATH (S-adenosylmethionine synthetase 3 OS=Arabidopsis thaliana GN=METK3 PE=1 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 4.293e-75
Identity = 138/166 (83.13%), Postives = 146/166 (87.95%), Query Frame = -1
Query:  244 RYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 741
            +YLD+ TIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VA GLARRCIVQVSYAIGVPEPLSVFVD+Y TG IPDK+IL ++KE+FDFRPGMM INLDLKRGGN RF KTAAYGHFGRDDPDFTWEVVKPLK
Sbjct:  222 KYLDDNTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLARRCIVQVSYAIGVPEPLSVFVDTYKTGTIPDKDILVLIKEAFDFRPGMMAINLDLKRGGNFRFQKTAAYGHFGRDDPDFTWEVVKPLK 387          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK1_VITVI (S-adenosylmethionine synthetase 1 OS=Vitis vinifera GN=METK1 PE=3 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 4.293e-75
Identity = 137/170 (80.59%), Postives = 151/170 (88.82%), Query Frame = -1
Query:  235 PRYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 744
            P+YLD++TIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VA+GLARRCIVQVSYAIGVPEPLSVFVD+Y TGKIPDK+IL ++K++FDFRPGM++INLDLKRGGN RF KTAAYGHFGRDDPDF+WE VK LK EK
Sbjct:  221 PQYLDDQTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILALIKKNFDFRPGMISINLDLKRGGNFRFQKTAAYGHFGRDDPDFSWETVKQLKPEK 390          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK1_PICSI (S-adenosylmethionine synthetase 1 OS=Picea sitchensis GN=METK1 PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 7.323e-75
Identity = 139/171 (81.29%), Postives = 149/171 (87.13%), Query Frame = -1
Query:  235 RYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSY--GTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 741
            +YLDE TIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VA GLARRC+VQVSYAIGVPEPLSVFVD+Y  GTGKI D EILK++KE+FDFRPGM++INLDLKRGGN RF KTAAYGHFGR+DPDFTWE VK LKWEK
Sbjct:  222 QYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLARRCLVQVSYAIGVPEPLSVFVDTYGTGTGKIQDAEILKLIKENFDFRPGMISINLDLKRGGNMRFQKTAAYGHFGREDPDFTWETVKVLKWEK 392          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK4_POPTR (S-adenosylmethionine synthetase 4 OS=Populus trichocarpa GN=METK4 PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 8.096e-74
Identity = 134/166 (80.72%), Postives = 147/166 (88.55%), Query Frame = -1
Query:  244 RYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 741
            +YLD+KTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VA+GLARRCIVQVSYAIGVPEPLSVFVD+Y TGKIPD++IL+++KE+FDFRPGM+ INLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  222 QYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVPEPLSVFVDTYKTGKIPDRDILELIKENFDFRPGMIAINLDLMRGGNSRYQKTAAYGHFGRDDPDFTWETVKLLK 387          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK3_VITVI (S-adenosylmethionine synthetase 3 OS=Vitis vinifera GN=METK3 PE=3 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 8.096e-74
Identity = 134/166 (80.72%), Postives = 147/166 (88.55%), Query Frame = -1
Query:  244 RYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 741
            +++D+KTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VA+GLARRC+VQVSYAIGVPEPLSVFVD+Y TGKIPDK+IL ++KE+FDFRPGM+ INLDLKRGGN RF KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  222 KFMDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILDLIKENFDFRPGMIAINLDLKRGGNFRFQKTAAYGHFGRDDPDFTWETVKLLK 387          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK3_SOLLC (S-adenosylmethionine synthetase 3 OS=Solanum lycopersicum GN=SAM3 PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.604e-72
Identity = 134/166 (80.72%), Postives = 144/166 (86.75%), Query Frame = -1
Query:  244 RYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 741
            +YLDE TIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VA+GLARRCIVQVSYAIGV EPLSVFVD+Y TG IPDK+IL ++KE+FDFRPGMM+INLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  222 KYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVAEPLSVFVDTYKTGTIPDKDILVLIKENFDFRPGMMSINLDLLRGGNYRYQKTAAYGHFGRDDPDFTWETVKVLK 387          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK2_SOLTU (S-adenosylmethionine synthetase 2 OS=Solanum tuberosum GN=METK2 PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.604e-72
Identity = 134/166 (80.72%), Postives = 144/166 (86.75%), Query Frame = -1
Query:  244 RYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 741
            +YLDE TIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VA+GLARRCIVQVSYAIGV EPLSVFVD+Y TG IPDK+IL ++KE+FDFRPGMM+INLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  222 KYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVAEPLSVFVDTYKTGTIPDKDILVLIKENFDFRPGMMSINLDLLRGGNFRYQKTAAYGHFGRDDPDFTWETVKVLK 387          
The following BLAST results are available for this feature:
BLAST of GE213145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK1_PEA1.334e-7683.43S-adenosylmethionine synthetase 1 (Fragment) OS=Pi... [more]
METK2_HORVU1.743e-7681.40S-adenosylmethionine synthetase 2 OS=Hordeum vulga... [more]
METK4_BRAJU1.475e-7583.13S-adenosylmethionine synthetase 4 OS=Brassica junc... [more]
METK3_ARATH4.293e-7583.13S-adenosylmethionine synthetase 3 OS=Arabidopsis t... [more]
METK1_VITVI4.293e-7580.59S-adenosylmethionine synthetase 1 OS=Vitis vinifer... [more]
METK1_PICSI7.323e-7581.29S-adenosylmethionine synthetase 1 OS=Picea sitchen... [more]
METK4_POPTR8.096e-7480.72S-adenosylmethionine synthetase 4 OS=Populus trich... [more]
METK3_VITVI8.096e-7480.72S-adenosylmethionine synthetase 3 OS=Vitis vinifer... [more]
METK3_SOLLC2.604e-7280.72S-adenosylmethionine synthetase 3 OS=Solanum lycop... [more]
METK2_SOLTU2.604e-7280.72S-adenosylmethionine synthetase 2 OS=Solanum tuber... [more]

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Properties
Property NameValue
Genbank descriptionC8 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213145 ID=GE213145; Name=GE213145; organism=Citrus sinensis; type=EST; length=759bp
ATTTCGAGCGGCCGCCCGGGCAGGTGCATTAAACCAAAACCAAAAAAGAA
GTGGGGAAAGAAGAAAAAGAAAGGAATTGAATGGGGAACATGTATGAGTT
CTGAACACAGGAGATTTGCTTAGTATTACAAAGCAGCAGCAAGATAATAT
TCAAATTATTCATCCACTACCAATAGAAGCAAACTTGAACAGCAGGGATA
GTTTTCACTTTTCAACTCAAATTTAAGCTTGAGGCTTTTCCCACTTGAGG
GGCTTCACAACTTCCCAAGTGAAGTCTGGGTCATCCCTGCCAAAGTGTCC
ATAGGCAGCAGTCTTCAAGAACCTGCCATTACCGCCCCTTTTGAGATCCA
AATTGATGGTCATCATTCCTGGCCTGAAATCAAAGCTTTCCTTCACAATT
TTGAGGATCTCCTTGTCAGGAATCTTGCCGGTTCCATATGAGTCCACAAA
AACAGACAATGGCTCAGGCACACCAATGGCATAGGAGACTTGGACAATGC
ACCTGCGAGCAAGCCCGTTTGCAACAATGCTCTTAGCAGCCTGCCTAACA
ATGTATGCACCACTCCTATCCACCTTAGTAGGGTCTTTTCCAGAGAAAGC
ACCGCCACCATGGGCTCCCCAGCCACCATAAGTGTCGATGATGATCTTAC
GTCCAGTGAGACCAGCATCACCATGAGGCCCACCAATGACAAAACGACCT
GATGGATTAAGGTGGAAGATGGTCTTCTCATCAAGGTACCTCGGCCGCGA
CCACGCTAA
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