GE213145

Overview
NameGE213145
Unique NameGE213145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_COXBU (S-adenosylmethionine synthetase OS=Coxiella burnetii GN=metK PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.591e-45
Identity = 92/161 (57.14%), Postives = 114/161 (70.81%), Query Frame = -1
Query:  262 PRYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 744
            P +LD+ T F +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRSGAY  R  AK+IVA GLA RC +QVSYAIGV EP S+ V+++GTGKI +  I +++KE FD RPG +   L+L R     +  TA YGHFGR++P+FTWE
Sbjct:  215 PHWLDKHTRFLVNPTGRFVIGGPVGDCGLTGRKIIVDTYGGMARHGGGCFSGKDPSKVDRSGAYAARYVAKNIVAGGLADRCEIQVSYAIGVAEPTSISVETFGTGKIDEVRIQQLIKEHFDLRPGKIIEELNLLR---SIYKATATYGHFGREEPEFTWE 372          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_COXBR (S-adenosylmethionine synthetase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=metK PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.591e-45
Identity = 92/161 (57.14%), Postives = 114/161 (70.81%), Query Frame = -1
Query:  262 PRYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 744
            P +LD+ T F +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRSGAY  R  AK+IVA GLA RC +QVSYAIGV EP S+ V+++GTGKI +  I +++KE FD RPG +   L+L R     +  TA YGHFGR++P+FTWE
Sbjct:  215 PHWLDKHTRFLVNPTGRFVIGGPVGDCGLTGRKIIVDTYGGMARHGGGCFSGKDPSKVDRSGAYAARYVAKNIVAGGLADRCEIQVSYAIGVAEPTSISVETFGTGKIDEVRIQQLIKEHFDLRPGKIIEELNLLR---SIYKATATYGHFGREEPEFTWE 372          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_COXB2 (S-adenosylmethionine synthetase OS=Coxiella burnetii (strain CbuG_Q212) GN=metK PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.591e-45
Identity = 92/161 (57.14%), Postives = 114/161 (70.81%), Query Frame = -1
Query:  262 PRYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 744
            P +LD+ T F +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRSGAY  R  AK+IVA GLA RC +QVSYAIGV EP S+ V+++GTGKI +  I +++KE FD RPG +   L+L R     +  TA YGHFGR++P+FTWE
Sbjct:  215 PHWLDKHTRFLVNPTGRFVIGGPVGDCGLTGRKIIVDTYGGMARHGGGCFSGKDPSKVDRSGAYAARYVAKNIVAGGLADRCEIQVSYAIGVAEPTSISVETFGTGKIDEVRIQQLIKEHFDLRPGKIIEELNLLR---SIYKATATYGHFGREEPEFTWE 372          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_COXB1 (S-adenosylmethionine synthetase OS=Coxiella burnetii (strain CbuK_Q154) GN=metK PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.591e-45
Identity = 92/161 (57.14%), Postives = 114/161 (70.81%), Query Frame = -1
Query:  262 PRYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 744
            P +LD+ T F +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRSGAY  R  AK+IVA GLA RC +QVSYAIGV EP S+ V+++GTGKI +  I +++KE FD RPG +   L+L R     +  TA YGHFGR++P+FTWE
Sbjct:  215 PHWLDKHTRFLVNPTGRFVIGGPVGDCGLTGRKIIVDTYGGMARHGGGCFSGKDPSKVDRSGAYAARYVAKNIVAGGLADRCEIQVSYAIGVAEPTSISVETFGTGKIDEVRIQQLIKEHFDLRPGKIIEELNLLR---SIYKATATYGHFGREEPEFTWE 372          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_SYMTH (S-adenosylmethionine synthetase OS=Symbiobacterium thermophilum GN=metK PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.714e-45
Identity = 88/158 (55.70%), Postives = 115/158 (72.78%), Query Frame = -1
Query:  262 LDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 735
            +D++T + +NP+GRFV+GGP GD GLTGRKII+DTY            GKDPTKVDRSGAY  R  AK+IVA GLAR+C VQV+YAIGV  P+S+ V ++GTGK+PD+ + ++V+E+FD RPG +  +LDL+R     + + AAYGHFGR D D  WE
Sbjct:  230 IDDRTRYFINPTGRFVVGGPQGDTGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSGAYAARWVAKNIVAAGLARKCEVQVAYAIGVAHPVSILVTTFGTGKLPDERLAQLVRETFDLRPGAIIRDLDLRR---PIYRQVAAYGHFGRPDLDLPWE 384          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_PELCD (S-adenosylmethionine synthetase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=metK PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.545e-45
Identity = 89/158 (56.33%), Postives = 114/158 (72.15%), Query Frame = -1
Query:  262 LDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 735
            LDE T F++NP+GRFV+GGP GD GLTGRKII+DTY            GKDP+KVDRS +Y+ R  AK++VA  LAR+C VQ++YAIGV EP+S+ V+++GTG +P  EI +IV+E FD RP  +   LDL R     + KTAAYGHFGR+ P+FTWE
Sbjct:  221 LDENTKFYVNPTGRFVVGGPQGDCGLTGRKIIVDTYGGQGSHGGGAFSGKDPSKVDRSASYMARYVAKNVVAAKLARKCEVQIAYAIGVAEPVSIMVNTFGTGVLPSNEIARIVREEFDMRPAAIIETLDLLR---PIYRKTAAYGHFGRELPEFTWE 375          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK_COXBN (S-adenosylmethionine synthetase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=metK PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.046e-45
Identity = 91/161 (56.52%), Postives = 113/161 (70.19%), Query Frame = -1
Query:  262 PRYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 744
            P +LD+ T F +NP+GRFVIGGP GD GLTGRKII+DTY            GKDP+KVDRSGAY  R  AK+IVA GLA RC +QVSYAIGV EP S+ V+++GTGKI +    +++KE FD RPG +   L+L R     +  TA YGHFGR++P+FTWE
Sbjct:  215 PHWLDKHTRFLVNPTGRFVIGGPVGDCGLTGRKIIVDTYGGMARHGGGCFSGKDPSKVDRSGAYAARYVAKNIVAGGLADRCEIQVSYAIGVAEPTSISVETFGTGKIDEVRTQQLIKEHFDLRPGKIIEELNLLR---SIYKATATYGHFGREEPEFTWE 372          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK1_BOVIN (S-adenosylmethionine synthetase isoform type-1 OS=Bos taurus GN=MAT1A PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.046e-45
Identity = 95/165 (57.58%), Postives = 116/165 (70.30%), Query Frame = -1
Query:  247 RYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPL 741
            RYLDE TI+HL PSGRFVIGGP GDAG+TGRKII+DTY            GKD TKVDRS AY  R  AKS+V  GL RR +VQVSYAIGV EPLS+ + +YGT +  ++E+L +V ++FD RPG++  +LDLK+     + KTA YGHFGR   +F WEV K L
Sbjct:  235 RYLDEDTIYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSQKTERELLDVVNKNFDLRPGVIVRDLDLKK---PIYQKTACYGHFGRS--EFPWEVPKKL 394          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK5_CAEEL (Probable S-adenosylmethionine synthetase 5 OS=Caenorhabditis elegans GN=sams-5 PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 7.897e-45
Identity = 95/167 (56.89%), Postives = 114/167 (68.26%), Query Frame = -1
Query:  235 LDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 735
            +D  T++HLNP G FV+GGP GDAGLTGRKII+DTY            GKDPTKVDRS AY  R  AKS+V  GL RRC+VQVSYAIGV +PLSV V S+GT  + + E+LKIV ++FD RPGM+  NLDLKR     +  TA  GHFG +  DF WE  + LK +K
Sbjct:  224 IDNDTVYHLNPCGSFVVGGPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAKPLSVMVFSFGTSALNEAELLKIVNDNFDLRPGMIIKNLDLKR---AIYEPTAENGHFGHN--DFPWEQARKLKIDK 385          
BLAST of GE213145 vs. ExPASy Swiss-Prot
Match: METK1_MOUSE (S-adenosylmethionine synthetase isoform type-1 OS=Mus musculus GN=Mat1a PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.347e-44
Identity = 93/165 (56.36%), Postives = 116/165 (70.30%), Query Frame = -1
Query:  247 RYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPL 741
            +YLDE T++HL PSGRFVIGGP GDAG+TGRKII+DTY            GKD TKVDRS AY  R  AKS+V  GL RR +VQVSYAIGV EPLS+ + +YGT    ++E+L++V ++FD RPG++  +LDLK+     + KTA YGHFGR   +F WEV K L
Sbjct:  235 KYLDEDTVYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSNKTERELLEVVNKNFDLRPGVIVRDLDLKK---PIYQKTACYGHFGRS--EFPWEVPKKL 394          
The following BLAST results are available for this feature:
BLAST of GE213145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_COXBU1.591e-4557.14S-adenosylmethionine synthetase OS=Coxiella burnet... [more]
METK_COXBR1.591e-4557.14S-adenosylmethionine synthetase OS=Coxiella burnet... [more]
METK_COXB21.591e-4557.14S-adenosylmethionine synthetase OS=Coxiella burnet... [more]
METK_COXB11.591e-4557.14S-adenosylmethionine synthetase OS=Coxiella burnet... [more]
METK_SYMTH2.714e-4555.70S-adenosylmethionine synthetase OS=Symbiobacterium... [more]
METK_PELCD3.545e-4556.33S-adenosylmethionine synthetase OS=Pelobacter carb... [more]
METK_COXBN6.046e-4556.52S-adenosylmethionine synthetase OS=Coxiella burnet... [more]
METK1_BOVIN6.046e-4557.58S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK5_CAEEL7.897e-4556.89Probable S-adenosylmethionine synthetase 5 OS=Caen... [more]
METK1_MOUSE1.347e-4456.36S-adenosylmethionine synthetase isoform type-1 OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC8 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213145 ID=GE213145; Name=GE213145; organism=Citrus sinensis; type=EST; length=759bp
ATTTCGAGCGGCCGCCCGGGCAGGTGCATTAAACCAAAACCAAAAAAGAA
GTGGGGAAAGAAGAAAAAGAAAGGAATTGAATGGGGAACATGTATGAGTT
CTGAACACAGGAGATTTGCTTAGTATTACAAAGCAGCAGCAAGATAATAT
TCAAATTATTCATCCACTACCAATAGAAGCAAACTTGAACAGCAGGGATA
GTTTTCACTTTTCAACTCAAATTTAAGCTTGAGGCTTTTCCCACTTGAGG
GGCTTCACAACTTCCCAAGTGAAGTCTGGGTCATCCCTGCCAAAGTGTCC
ATAGGCAGCAGTCTTCAAGAACCTGCCATTACCGCCCCTTTTGAGATCCA
AATTGATGGTCATCATTCCTGGCCTGAAATCAAAGCTTTCCTTCACAATT
TTGAGGATCTCCTTGTCAGGAATCTTGCCGGTTCCATATGAGTCCACAAA
AACAGACAATGGCTCAGGCACACCAATGGCATAGGAGACTTGGACAATGC
ACCTGCGAGCAAGCCCGTTTGCAACAATGCTCTTAGCAGCCTGCCTAACA
ATGTATGCACCACTCCTATCCACCTTAGTAGGGTCTTTTCCAGAGAAAGC
ACCGCCACCATGGGCTCCCCAGCCACCATAAGTGTCGATGATGATCTTAC
GTCCAGTGAGACCAGCATCACCATGAGGCCCACCAATGACAAAACGACCT
GATGGATTAAGGTGGAAGATGGTCTTCTCATCAAGGTACCTCGGCCGCGA
CCACGCTAA
back to top