GE213143

Overview
NameGE213143
Unique NameGE213143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1162
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 6.876e-66
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = -1
Query:   20 VASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 382
            +ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP DSPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 8.980e-66
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = -1
Query:   20 VASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 382
            +ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP DSPYAGGVFLV+IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 8.980e-66
Identity = 117/121 (96.69%), Postives = 120/121 (99.17%), Query Frame = -1
Query:   20 VASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 382
            +ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP DSPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPN+NSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 8.980e-66
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = -1
Query:   20 VASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 382
            +ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP +SPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 2.000e-65
Identity = 117/121 (96.69%), Postives = 120/121 (99.17%), Query Frame = -1
Query:   20 VASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 382
            +ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP +SPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 7.602e-65
Identity = 136/267 (50.94%), Postives = 173/267 (64.79%), Query Frame = 2
Query:  380 HMTDMITYADTDXXXXGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG------RVGGVVTNWALVSMNHDTQSCMDPNVMEAK---------------VVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREV--VPGMIVTGMEVAEIDGAPRMGPTFGAMMISRQKAAHLALK 1108
            +  D+  +A +D    GAGS+GLS AY ++KN P++++ IIE SV+PGGG+WL GQLFSAMV+RKPAH+FL EL I Y+++  YVV+KHAALF ST++SK+L  PNVKLFNA   EDL+ +         V GVVTNW LV+  H TQ CMDPNV+E                 V++S+ GHDGPFGA   KR+  I   +++ GMK LDMN AE  +V  +     V  M   GMEVAE+DG  RMGPTFGAM +S   AA   LK
Sbjct:   56 YFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILK 322          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 246.514 bits (628), Expect = 2.212e-64
Identity = 113/121 (93.39%), Postives = 121/121 (100.00%), Query Frame = -1
Query:   20 VASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 382
            +ASKRILKELKDLQKDPP++CSAGPVAEDMFHWQATIMGPP+SPYAGGVFLV+IHFPPDYPFKPPKV+F+TKV+HPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP
Sbjct:    1 MASKRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 5.099e-61
Identity = 108/121 (89.26%), Postives = 115/121 (95.04%), Query Frame = -1
Query:   20 VASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 382
            +ASKRI KEL+DLQ+DPP SCSAGP  +DMF WQATIMGP DSP+AGGVFLVTIHFPPDYPFKPPKVAFRTKV+HPNINSNGSICLDILKEQWSPALT+SKVLLSICSLLTDPNPDDPLVP
Sbjct:    1 MASKRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVP 121          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 1.484e-60
Identity = 106/121 (87.60%), Postives = 115/121 (95.04%), Query Frame = -1
Query:   20 VASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 382
            +A++RILKELK+LQ+DPP SCSAGP  EDMFHWQATIMGP +SPY+GGVFLV IHFPPDYPFKPPKV FRTKVFHPNINSNG+ICLDILK+QWSPALTISKVLLSICSLLTDPNPDDPLVP
Sbjct:    1 MATRRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVP 121          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 2.217e-56
Identity = 99/121 (81.82%), Postives = 109/121 (90.08%), Query Frame = -1
Query:   20 VASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 382
            +A KRI KEL+DL +DPP  CSAGPV +D+FHWQATIMGPPDSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVP
Sbjct:    1 MALKRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 121          
The following BLAST results are available for this feature:
BLAST of GE213143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 319
Match NameE-valueIdentityDescription
UBC9_ARATH6.876e-6697.52SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC4_SOLLC8.980e-6697.52Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC28_ARATH8.980e-6696.69Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC10_ARATH8.980e-6697.52Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC8_ARATH2.000e-6596.69Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
THI4_YEAST7.602e-6550.94Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
UBC11_ARATH2.212e-6493.39Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC30_ARATH5.099e-6189.26Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC29_ARATH1.484e-6087.60Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBCD1_DROME2.217e-5681.82Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]

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Properties
Property NameValue
Genbank descriptionC6 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213143 ID=GE213143; Name=GE213143; organism=Citrus sinensis; type=EST; length=1162bp
ATTTCGAGGCCGCCCGGGCAGGTACAAGCGGGTCGTCAGGATTTGGGTCA
GTAAGCAACGAGCAGATAGAAAGCAGGACCTTTGAAATGGTAAGAGCTGG
GCTCCACTGTTCTTTAAGGATATCAAGACATATGCTTCCATTGCTGTTGA
TGTTTGGGTGGAAGACCTTGGTCCTAAAAGCAACCTTTGGGGGCTTGAAG
GGATAATCCGGAGGAAAATGAATGGTAACCAAAAATACACCTCCTGCATA
TGGACTATCAGGGGGGCCCATAATTGTTGCTTGCCAGTGGAACATGTCTT
CAGCCACCGGACCAGCGCTGCAAGACGTGGGAGGATCCTTCTGCAAATCC
TTGAGTTCCTTCAAAATACGCTTCGAAGCCACATGACGGACATGATCACT
TATGCTGACACTGATGTGGTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTC
TTGTGCTTATGAGCTCAGCAAAAACCCCAACATTCAGATTGCTATTATCG
AACAGTCTGTTAGCCCCGGCGGTGGCGCGTGGCTCAGTGGACAGCTCTTC
TCTGCCATGGTTGTGCGCAAACCAGCCCACATCTTCCTTGACGAGCTTGG
CATCGACTACGATGAGCAAGACAGCTATGTTGTGATCAAGCATGCAGCGC
TGTTCACCTCCACTATAATGAGCAAGCTCCTGGCCCGCCCCAACGTCAAG
CTCTTTAATGCAGTGGCAGCCGAGGACTTGATAGTCAAAGGCGGCAGAGT
TGGTGGTGTGGTGACCAACTGGGCGTTGGTGTCAATGAATCACGATACAC
AGTCTTGCATGGATCCCAATGTAATGGAAGCGAAGGTGGTTGTGAGCTCT
TGTGGCCATGATGGGCCTTTTGGGGCCACTGGAGTAAAGAGGTTGAAGAG
TATCGGAATGATTGAGGAAGTGCCTGGAATGAAGGCACTGGACATGAACT
CTGCAGAAGATGCTATTGTGAGGCTGACCAGGGAGGTTGTGCCTGGTATG
ATAGTTACCGGCATGGAAGTTGCCGAGATTGATGGTGCTCCTAGAATGGG
GCCAACATTTGGAGCAATGATGATATCGAGGCAGAAGGCTGCGCATTTGG
CGTTGAAGTCACTGGGCCAGCCGAATGCATTAGACGGTACCTGCCCGGGC
GGCCGCTCGAAA
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