GE213143

Overview
NameGE213143
Unique NameGE213143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1162
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 6.291e-27
Identity = 58/127 (45.67%), Postives = 78/127 (61.42%), Query Frame = -1
Query:   41 ASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPN 379
            A KR+LKEL+ L KD P    AGP +E+ +F W   I GPPD+PYA GVF   + FP DYP  PPK+ F   + HPNI  NG +C+ IL             +E+WSP  ++ K+LLS+ S+L++PN
Sbjct:    5 AQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPN 131          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: THI4_SULIY (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=YG5714_1786 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 6.291e-27
Identity = 76/250 (30.40%), Postives = 124/250 (49.60%), Query Frame = 2
Query:  371 LRSHMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISRQKAAHLALKSL 1114
            ++  M D   + ++D    GAG +GLS AY L+K   ++  + E+ +S GGG      LF  +++ KPA   L E+ +   E +  V +  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++S +  A    K L
Sbjct:   18 IKETMEDWYQFVESDVVIVGAGPSGLSAAYYLAK-AGLKTLVFERRLSFGGGIGGGAMLFHKLIIEKPADEILREVNVRLKEVEEGVYVVDSAEFMAKLATAAIDA-GAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: THI4_SULIM (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=M1425_1670 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 6.291e-27
Identity = 76/250 (30.40%), Postives = 124/250 (49.60%), Query Frame = 2
Query:  371 LRSHMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISRQKAAHLALKSL 1114
            ++  M D   + ++D    GAG +GLS AY L+K   ++  + E+ +S GGG      LF  +++ KPA   L E+ +   E +  V +  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++S +  A    K L
Sbjct:   18 IKETMEDWYQFVESDVVIVGAGPSGLSAAYYLAK-AGLKTLVFERRLSFGGGIGGGAMLFHKLIIEKPADEILREVNVRLKEVEEGVYVVDSAEFMAKLATAAIDA-GAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: THI4_SULIL (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=LS215_1798 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 6.291e-27
Identity = 76/250 (30.40%), Postives = 124/250 (49.60%), Query Frame = 2
Query:  371 LRSHMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISRQKAAHLALKSL 1114
            ++  M D   + ++D    GAG +GLS AY L+K   ++  + E+ +S GGG      LF  +++ KPA   L E+ +   E +  V +  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++S +  A    K L
Sbjct:   18 IKETMEDWYQFVESDVVIVGAGPSGLSAAYYLAK-AGLKTLVFERRLSFGGGIGGGAMLFHKLIIEKPADEILREVNVRLKEVEEGVYVVDSAEFMAKLATAAIDA-GAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: THI4_SULIK (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=M164_1717 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 6.291e-27
Identity = 76/250 (30.40%), Postives = 124/250 (49.60%), Query Frame = 2
Query:  371 LRSHMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISRQKAAHLALKSL 1114
            ++  M D   + ++D    GAG +GLS AY L+K   ++  + E+ +S GGG      LF  +++ KPA   L E+ +   E +  V +  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++S +  A    K L
Sbjct:   18 IKETMEDWYQFVESDVVIVGAGPSGLSAAYYLAK-AGLKTLVFERRLSFGGGIGGGAMLFHKLIIEKPADEILREVNVRLKEVEEGVYVVDSAEFMAKLATAAIDA-GAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: THI4_SULIA (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.16.27) GN=M1627_1786 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 6.291e-27
Identity = 76/250 (30.40%), Postives = 124/250 (49.60%), Query Frame = 2
Query:  371 LRSHMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISRQKAAHLALKSL 1114
            ++  M D   + ++D    GAG +GLS AY L+K   ++  + E+ +S GGG      LF  +++ KPA   L E+ +   E +  V +  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++S +  A    K L
Sbjct:   18 IKETMEDWYQFVESDVVIVGAGPSGLSAAYYLAK-AGLKTLVFERRLSFGGGIGGGAMLFHKLIIEKPADEILREVNVRLKEVEEGVYVVDSAEFMAKLATAAIDA-GAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: THI4_METMA (Putative thiazole biosynthetic enzyme OS=Methanosarcina mazei GN=MM_0222 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 6.291e-27
Identity = 79/242 (32.64%), Postives = 127/242 (52.48%), Query Frame = 2
Query:  395 ITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIE-EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISRQKAAHLALKSL 1114
            + Y D D    G G A L  A  L++    ++AI EQ +S GGG W  G +F  +VV++ A   LD+ GI Y E +    + ++      +++   +    ++FN V+ ED++++   RV G+V NW  V+     +  +DP ++  K+V+   GHD     T ++++ +  + E  + G K +     E   V  T+E+ PG+IV GM       APRMGP FG M++S +KAA LAL  L
Sbjct:   21 LEYTDIDVALVGGGPANLVAAKYLAE-AGAKVAIYEQKLSLGGGMWAGGMMFPRIVVQEEACRVLDDFGIRYKEYEPGYFVANSVESVGKLIAGATSA-GAEVFNLVSFEDIMIRENDRVTGIVINWGPVTTQ---RLHVDPLMIRTKLVIDGTGHDAVVCNTILRKIPNAKIGEFGILGEKPMWSEVGERLAVDATQEIYPGLIVAGMAANAATRAPRMGPVFGGMLLSGEKAAKLALDRL 257          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: THI4_HALSA (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarium GN=VNG_2604G PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 6.291e-27
Identity = 82/273 (30.04%), Postives = 135/273 (49.45%), Query Frame = 2
Query:  374 RSHMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGI--DYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD----------GPFGATGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISRQKAAHLALKSL 1114
            R    + +   +TD    G G +GL  A EL+   ++ + IIE++   GGG WL G L + + VR PA   LD+LG+  +YDE++  + +  A    S +++        ++ N     D++V+    V G V NW  V       +C+DP  +EA VVV + GHD          G   A G++ ++  + GM +           + PG  ++ +  +ED +V  T +V  G++  G+  A + G  RMGPTFGAM++S + AA+  +  L
Sbjct:   20 RQWTDEFLDDTETDVIIVGGGPSGLMAAKELADR-DVDVTIIEKNNYLGGGFWLGGFLMNKLTVRSPAEAVLDDLGVPYEYDEENDGLAVADAPHACSAMITAA-CDAGARIQNMTEFTDIVVRDDHAVAGAVVNWTPVHSLPRELTCVDPIALEADVVVDATGHDAVVVSKLHERGVLEADGIEHVEEHATGMDQSGDGEYGAPGHDSPGHDSMWVADSEDKVVEQTGKVHDGLVTAGLSTATVHGLTRMGPTFGAMLLSGKVAANAVMDEL 290          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: THI4_HALS3 (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE4651F PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 6.291e-27
Identity = 82/273 (30.04%), Postives = 135/273 (49.45%), Query Frame = 2
Query:  374 RSHMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGI--DYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD----------GPFGATGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISRQKAAHLALKSL 1114
            R    + +   +TD    G G +GL  A EL+   ++ + IIE++   GGG WL G L + + VR PA   LD+LG+  +YDE++  + +  A    S +++        ++ N     D++V+    V G V NW  V       +C+DP  +EA VVV + GHD          G   A G++ ++  + GM +           + PG  ++ +  +ED +V  T +V  G++  G+  A + G  RMGPTFGAM++S + AA+  +  L
Sbjct:   20 RQWTDEFLDDTETDVIIVGGGPSGLMAAKELADR-DVDVTIIEKNNYLGGGFWLGGFLMNKLTVRSPAEAVLDDLGVPYEYDEENDGLAVADAPHACSAMITAA-CDAGARIQNMTEFTDIVVRDDHAVAGAVVNWTPVHSLPRELTCVDPIALEADVVVDATGHDAVVVSKLHERGVLEADGIEHVEEHATGMDQSGDGEYGAPGHDSPGHDSMWVADSEDKVVEQTGKVHDGLVTAGLSTATVHGLTRMGPTFGAMLLSGKVAANAVMDEL 290          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 8.217e-27
Identity = 57/116 (49.14%), Postives = 76/116 (65.52%), Query Frame = -1
Query:   26 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 373
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121          
The following BLAST results are available for this feature:
BLAST of GE213143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 319
Match NameE-valueIdentityDescription
UBC7_YEAST6.291e-2745.67Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
THI4_SULIY6.291e-2730.40Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIM6.291e-2730.40Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIL6.291e-2730.40Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIK6.291e-2730.40Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIA6.291e-2730.40Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_METMA6.291e-2732.64Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_HALSA6.291e-2730.04Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_HALS36.291e-2730.04Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
UBE2N_RAT8.217e-2749.14Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionC6 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213143 ID=GE213143; Name=GE213143; organism=Citrus sinensis; type=EST; length=1162bp
ATTTCGAGGCCGCCCGGGCAGGTACAAGCGGGTCGTCAGGATTTGGGTCA
GTAAGCAACGAGCAGATAGAAAGCAGGACCTTTGAAATGGTAAGAGCTGG
GCTCCACTGTTCTTTAAGGATATCAAGACATATGCTTCCATTGCTGTTGA
TGTTTGGGTGGAAGACCTTGGTCCTAAAAGCAACCTTTGGGGGCTTGAAG
GGATAATCCGGAGGAAAATGAATGGTAACCAAAAATACACCTCCTGCATA
TGGACTATCAGGGGGGCCCATAATTGTTGCTTGCCAGTGGAACATGTCTT
CAGCCACCGGACCAGCGCTGCAAGACGTGGGAGGATCCTTCTGCAAATCC
TTGAGTTCCTTCAAAATACGCTTCGAAGCCACATGACGGACATGATCACT
TATGCTGACACTGATGTGGTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTC
TTGTGCTTATGAGCTCAGCAAAAACCCCAACATTCAGATTGCTATTATCG
AACAGTCTGTTAGCCCCGGCGGTGGCGCGTGGCTCAGTGGACAGCTCTTC
TCTGCCATGGTTGTGCGCAAACCAGCCCACATCTTCCTTGACGAGCTTGG
CATCGACTACGATGAGCAAGACAGCTATGTTGTGATCAAGCATGCAGCGC
TGTTCACCTCCACTATAATGAGCAAGCTCCTGGCCCGCCCCAACGTCAAG
CTCTTTAATGCAGTGGCAGCCGAGGACTTGATAGTCAAAGGCGGCAGAGT
TGGTGGTGTGGTGACCAACTGGGCGTTGGTGTCAATGAATCACGATACAC
AGTCTTGCATGGATCCCAATGTAATGGAAGCGAAGGTGGTTGTGAGCTCT
TGTGGCCATGATGGGCCTTTTGGGGCCACTGGAGTAAAGAGGTTGAAGAG
TATCGGAATGATTGAGGAAGTGCCTGGAATGAAGGCACTGGACATGAACT
CTGCAGAAGATGCTATTGTGAGGCTGACCAGGGAGGTTGTGCCTGGTATG
ATAGTTACCGGCATGGAAGTTGCCGAGATTGATGGTGCTCCTAGAATGGG
GCCAACATTTGGAGCAATGATGATATCGAGGCAGAAGGCTGCGCATTTGG
CGTTGAAGTCACTGGGCCAGCCGAATGCATTAGACGGTACCTGCCCGGGC
GGCCGCTCGAAA
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