GE213143

Overview
NameGE213143
Unique NameGE213143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1162
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 1.100e-55
Identity = 99/121 (81.82%), Postives = 107/121 (88.43%), Query Frame = -1 
Query:   20 VASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 382
            +A KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVP
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 121
[Close]
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 1.100e-55
Identity = 99/121 (81.82%), Postives = 107/121 (88.43%), Query Frame = -1 
Query:   20 VASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 382
            +A KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVP
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 121
[Close]
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 1.100e-55
Identity = 99/121 (81.82%), Postives = 107/121 (88.43%), Query Frame = -1 
Query:   20 VASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 382
            +A KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVP
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 121
[Close]
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 1.100e-55
Identity = 99/121 (81.82%), Postives = 107/121 (88.43%), Query Frame = -1 
Query:   20 VASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 382
            +A KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVP
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 121
[Close]
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 1.100e-55
Identity = 99/121 (81.82%), Postives = 107/121 (88.43%), Query Frame = -1 
Query:   20 VASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 382
            +A KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVP
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 121
[Close]
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 1.100e-55
Identity = 99/121 (81.82%), Postives = 107/121 (88.43%), Query Frame = -1 
Query:   20 VASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 382
            +A KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVP
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 121
[Close]
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 1.100e-55
Identity = 99/121 (81.82%), Postives = 107/121 (88.43%), Query Frame = -1 
Query:   20 VASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 382
            +A KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVP
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 121
[Close]
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 1.100e-55
Identity = 99/121 (81.82%), Postives = 107/121 (88.43%), Query Frame = -1 
Query:   20 VASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 382
            +A KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVP
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 121
[Close]
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 1.100e-55
Identity = 99/121 (81.82%), Postives = 107/121 (88.43%), Query Frame = -1 
Query:   20 VASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 382
            +A KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVP
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 121
[Close]
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 3.201e-55
Identity = 97/121 (80.17%), Postives = 110/121 (90.91%), Query Frame = -1 
Query:   20 VASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 382
            +A KRI KEL DL +DPP+SCSAGPV ED+FHWQATIMGP DSPY+GGVF + IHFP DYPFKPPKV F T+++HPNINSNGSICLDIL++QWSPALTISKVLLSICS+LTDPNPD+PLVP
Sbjct:    1 MAFKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVP 121
The following BLAST results are available for this feature:
BLAST of GE213143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 319
Match NameE-valueIdentityDescription
UB2D3_MOUSE1.100e-5581.82Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus... [more]
UB2D3_MACFA1.100e-5581.82Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci... [more]
UB2D3_HUMAN1.100e-5581.82Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens... [more]
UB2D2_XENLA1.100e-5581.82Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT1.100e-5581.82Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_PIG1.100e-5581.82Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
UB2D2_MOUSE1.100e-5581.82Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN1.100e-5581.82Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN1.100e-5581.82Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
UBC1_COLGL3.201e-5580.17Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]

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Properties
Property NameValue
Genbank descriptionC6 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213143 ID=GE213143; Name=GE213143; organism=Citrus sinensis; type=EST; length=1162bp
ATTTCGAGGCCGCCCGGGCAGGTACAAGCGGGTCGTCAGGATTTGGGTCA
GTAAGCAACGAGCAGATAGAAAGCAGGACCTTTGAAATGGTAAGAGCTGG
GCTCCACTGTTCTTTAAGGATATCAAGACATATGCTTCCATTGCTGTTGA
TGTTTGGGTGGAAGACCTTGGTCCTAAAAGCAACCTTTGGGGGCTTGAAG
GGATAATCCGGAGGAAAATGAATGGTAACCAAAAATACACCTCCTGCATA
TGGACTATCAGGGGGGCCCATAATTGTTGCTTGCCAGTGGAACATGTCTT
CAGCCACCGGACCAGCGCTGCAAGACGTGGGAGGATCCTTCTGCAAATCC
TTGAGTTCCTTCAAAATACGCTTCGAAGCCACATGACGGACATGATCACT
TATGCTGACACTGATGTGGTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTC
TTGTGCTTATGAGCTCAGCAAAAACCCCAACATTCAGATTGCTATTATCG
AACAGTCTGTTAGCCCCGGCGGTGGCGCGTGGCTCAGTGGACAGCTCTTC
TCTGCCATGGTTGTGCGCAAACCAGCCCACATCTTCCTTGACGAGCTTGG
CATCGACTACGATGAGCAAGACAGCTATGTTGTGATCAAGCATGCAGCGC
TGTTCACCTCCACTATAATGAGCAAGCTCCTGGCCCGCCCCAACGTCAAG
CTCTTTAATGCAGTGGCAGCCGAGGACTTGATAGTCAAAGGCGGCAGAGT
TGGTGGTGTGGTGACCAACTGGGCGTTGGTGTCAATGAATCACGATACAC
AGTCTTGCATGGATCCCAATGTAATGGAAGCGAAGGTGGTTGTGAGCTCT
TGTGGCCATGATGGGCCTTTTGGGGCCACTGGAGTAAAGAGGTTGAAGAG
TATCGGAATGATTGAGGAAGTGCCTGGAATGAAGGCACTGGACATGAACT
CTGCAGAAGATGCTATTGTGAGGCTGACCAGGGAGGTTGTGCCTGGTATG
ATAGTTACCGGCATGGAAGTTGCCGAGATTGATGGTGCTCCTAGAATGGG
GCCAACATTTGGAGCAATGATGATATCGAGGCAGAAGGCTGCGCATTTGG
CGTTGAAGTCACTGGGCCAGCCGAATGCATTAGACGGTACCTGCCCGGGC
GGCCGCTCGAAA
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