GE213143

Overview
NameGE213143
Unique NameGE213143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1162
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 4.795e-43
Identity = 80/119 (67.23%), Postives = 97/119 (81.51%), Query Frame = -1
Query:   23 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 379
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GPP S Y GGVF + I F PDYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV
Sbjct:   56 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLV 174          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 4.059e-42
Identity = 79/119 (66.39%), Postives = 96/119 (80.67%), Query Frame = -1
Query:   23 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 379
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GPP S Y GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLV 180          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 4.059e-42
Identity = 79/119 (66.39%), Postives = 96/119 (80.67%), Query Frame = -1
Query:   23 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 379
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GPP S Y GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLV 180          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 4.059e-42
Identity = 79/119 (66.39%), Postives = 96/119 (80.67%), Query Frame = -1
Query:   23 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 379
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GPP S Y GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLV 180          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 2.909e-40
Identity = 100/259 (38.61%), Postives = 143/259 (55.21%), Query Frame = 2
Query:  338 LLQILEFLQNTLRSHMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISRQKAAHLALKSL 1114
            +L+ +   +  + S+  D++   + D    GAG +G+  AY L+K    ++AI E+ +S GGG W  G  F+ +VV+  A   LDE GI Y+E +    +  A    +TI SK++ +  VK+FN +  EDL++K  RV G+V NW  V M       +DP  +EAK V+ S GH        VKR    G+++E+PG  A+     E   V+ TREV PG+ VTGM    I GAPRMGP FG M +S +KAA   LK L
Sbjct:    1 MLREVTITRAIVESYYRDLLNNLELDVAIVGAGPSGMVAAYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKVVVQDEAREILDEFGIRYEEFEKGYYVADAIEVATTIASKVV-KSGVKIFNMIEVEDLVIKDNRVSGIVINWTPVLM---AGLHVDPLTIEAKYVIDSTGHGAQVAQFLVKR----GLLKEIPGEGAMWAEQGEKLTVKNTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGRKAAQEILKKL 250          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.463e-39
Identity = 99/249 (39.76%), Postives = 138/249 (55.42%), Query Frame = 2
Query:  371 LRSHMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISRQKAAHLALKSLG 1117
            + S+  D++   + D    GAG +G+   Y L+K    ++AI E+ +S GGG W  G  F+ +VV++ A   LDE  I Y+E +    +  A    +TI SK + +  VK+FN V  EDL+VK  RV G+V NW  V M   T   +DP  +EAK V+ S GH    GA   + L   G+IE++PG  A+     E   V  T+EV PG+ VTGM    + GAPRMGP FG M +S +KAA   L+ LG
Sbjct:   12 VESYFKDLLNNLELDVAIVGAGPSGMVAGYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKIVVQEEAKEILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFNMVEVEDLVVKDDRVSGIVINWTPVKM---TGLHVDPLTVEAKYVIDSTGH----GAQVTQFLLKRGLIEKIPGEGAMWAEMGEKLTVENTKEVFPGLYVTGMAANAVSGAPRMGPIFGGMFLSGRKAAMEILQKLG 251          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.463e-39
Identity = 100/248 (40.32%), Postives = 137/248 (55.24%), Query Frame = 2
Query:  371 LRSHMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISRQKAAHLALKSL 1114
            + S+  D++   + D    GAG +G+  AY L+K    ++AI E+ +S GGG W  G  F+ +VV++ A   LDE  I Y+E +    +  A    +TI SK + +  VK+FN +  EDL+VK  RV G+V NW  V M   T   +DP  +EAK V+ S GH    GA   + L   G+IE +PG  A+     E   V  TREV PG+ VTGM    I GAPRMGP FG M +S +KAA   L+ L
Sbjct:   12 IESYYRDLLNNLELDVAIVGAGPSGMVAAYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKVVVQEEAREILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFNMIEVEDLVVKDNRVSGIVINWTPVLM---TGLHVDPLTVEAKYVIDSTGH----GAQVAQFLLKRGLIERIPGEGAMWAEQGERLTVENTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGKKAAQEILEKL 250          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.222e-38
Identity = 96/257 (37.35%), Postives = 141/257 (54.86%), Query Frame = 2
Query:  350 LEFLQNTLRSHMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISRQKAAHLALKSLGQ 1120
            +E  +  + ++  D++     D    GAG +G+   Y L+K    ++AI E+ +S GGG W     F+ +VV++ A   LDE G+DY +  + + +  +    ST+ SK + +   K+FN V  EDL+VK GRV G+V NW  V M   T   +DP  +EAK VV S GH    GA   + L   G+I+ +PG   +     E+  V  TREV PG+  TGM    + GAPRMGP FG M++S +KAA   L+ LG+
Sbjct:    4 IEISRAIVEAYFNDLLQNLQLDIAIVGAGPSGMVAGYYLAKG-GAKVAIFEKKLSVGGGIWGGAMGFNRVVVQESAREILDEFGVDYSQVGNGLYVLDSIELASTLASKAV-KAGAKIFNMVEVEDLVVKDGRVSGLVINWTPVMM---TGLHVDPLTVEAKFVVDSTGH----GAQISQHLLKRGLIKAIPGEGPMWAEKGEELTVEHTREVFPGLYATGMAANALAGAPRMGPIFGGMLLSGRKAALEILQKLGK 251          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: THI4_AERPE (Putative thiazole biosynthetic enzyme OS=Aeropyrum pernix GN=APE_2149.1 PE=3 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 5.314e-34
Identity = 89/257 (34.63%), Postives = 140/257 (54.47%), Query Frame = 2
Query:  347 ILEFLQNTLRSHMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISRQKAAHLALKSLG 1117
            IL+   ++L+ H+        +D    GAG AGL+ A+ L++    ++ I+EQ+   GGG WL G   + + +R PA   LDEL + Y+     +      L  + + ++ L     ++ N    +D+IV+  RV GVV NW+ V       +C+DP  + A+ VV + GHD    A   ++L   GM+E    +  + +  +ED +V  T EV PG++V G+ VAE+ G PRMGPTFGAM++S +KAA L  + LG
Sbjct:   15 ILDGFYSSLKKHLR-------SDVIVVGAGPAGLTAAWRLAE-AGARVLIVEQNNYLGGGLWLGGYFMNPVTIRAPAQRILDELEVPYEAVKPGLYRTKGPLLAAKLAARAL-EAGAEVLNLTMLDDVIVENSRVAGVVVNWSPVQGLPRQITCVDPVGLRAEYVVDATGHD----AVVTRKLAERGMVE-ASKLGPMWVERSEDLVVEKTGEVYPGLVVAGIAVAEVYGLPRMGPTFGAMLLSGEKAAALIGEKLG 257          
BLAST of GE213143 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 4.498e-33
Identity = 60/123 (48.78%), Postives = 89/123 (72.36%), Query Frame = -1
Query:   11 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPARA 379
            + KRI +E+ +L  DPP  CSAGP  ++++HW ATI+GP  +PY GG+F + I FP DYPFKPPK+ F+T+++H N+++ G + ++IL++ WSPALTI+KVL +I S+   P P  P +P  A
Sbjct:   37 SGKRIQREMAELNIDPPPDCSAGPKGDNLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLVFKTRIYHCNVDTAGDLSVNILRDSWSPALTITKVLQAIRSIFLKPEPYSPALPVIA 159          
The following BLAST results are available for this feature:
BLAST of GE213143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 319
Match NameE-valueIdentityDescription
UB2E2_HUMAN4.795e-4367.23Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]
UB2E3_MOUSE4.059e-4266.39Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN4.059e-4266.39Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN4.059e-4266.39Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
THI4_PYRHO2.909e-4038.61Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRFU2.463e-3939.76Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAB2.463e-3940.32Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRKO1.222e-3837.35Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_AERPE5.314e-3434.63Putative thiazole biosynthetic enzyme OS=Aeropyrum... [more]
COP10_ARATH4.498e-3348.78Constitutive photomorphogenesis protein 10 OS=Arab... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC6 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213143 ID=GE213143; Name=GE213143; organism=Citrus sinensis; type=EST; length=1162bp
ATTTCGAGGCCGCCCGGGCAGGTACAAGCGGGTCGTCAGGATTTGGGTCA
GTAAGCAACGAGCAGATAGAAAGCAGGACCTTTGAAATGGTAAGAGCTGG
GCTCCACTGTTCTTTAAGGATATCAAGACATATGCTTCCATTGCTGTTGA
TGTTTGGGTGGAAGACCTTGGTCCTAAAAGCAACCTTTGGGGGCTTGAAG
GGATAATCCGGAGGAAAATGAATGGTAACCAAAAATACACCTCCTGCATA
TGGACTATCAGGGGGGCCCATAATTGTTGCTTGCCAGTGGAACATGTCTT
CAGCCACCGGACCAGCGCTGCAAGACGTGGGAGGATCCTTCTGCAAATCC
TTGAGTTCCTTCAAAATACGCTTCGAAGCCACATGACGGACATGATCACT
TATGCTGACACTGATGTGGTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTC
TTGTGCTTATGAGCTCAGCAAAAACCCCAACATTCAGATTGCTATTATCG
AACAGTCTGTTAGCCCCGGCGGTGGCGCGTGGCTCAGTGGACAGCTCTTC
TCTGCCATGGTTGTGCGCAAACCAGCCCACATCTTCCTTGACGAGCTTGG
CATCGACTACGATGAGCAAGACAGCTATGTTGTGATCAAGCATGCAGCGC
TGTTCACCTCCACTATAATGAGCAAGCTCCTGGCCCGCCCCAACGTCAAG
CTCTTTAATGCAGTGGCAGCCGAGGACTTGATAGTCAAAGGCGGCAGAGT
TGGTGGTGTGGTGACCAACTGGGCGTTGGTGTCAATGAATCACGATACAC
AGTCTTGCATGGATCCCAATGTAATGGAAGCGAAGGTGGTTGTGAGCTCT
TGTGGCCATGATGGGCCTTTTGGGGCCACTGGAGTAAAGAGGTTGAAGAG
TATCGGAATGATTGAGGAAGTGCCTGGAATGAAGGCACTGGACATGAACT
CTGCAGAAGATGCTATTGTGAGGCTGACCAGGGAGGTTGTGCCTGGTATG
ATAGTTACCGGCATGGAAGTTGCCGAGATTGATGGTGCTCCTAGAATGGG
GCCAACATTTGGAGCAATGATGATATCGAGGCAGAAGGCTGCGCATTTGG
CGTTGAAGTCACTGGGCCAGCCGAATGCATTAGACGGTACCTGCCCGGGC
GGCCGCTCGAAA
back to top