EY736420

Overview
NameEY736420
Unique NameEY736420
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736420 vs. ExPASy Swiss-Prot
Match: CH60_THICR (60 kDa chaperonin OS=Thiomicrospira crunogena (strain XCL-2) GN=groL PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.262e-56
Identity = 109/221 (49.32%), Postives = 152/221 (68.78%), Query Frame = 2
Query:   23 DDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSXKLAERIAKLSGG 685
            D  +G MIA+A++KV  +GV+                GME DRGY+SP FVTN EK++ E +N  +L+ D+KIS I+D++P LE  ++   PLLIIAEDV GEALATLV+N +RGI+   AIKAPGFGERRKA+LQD+A++TG    + ++GL +EN +++ LG  +   + KDST +I  A +K +I+AR AQ++ +   T S YDS KL ER+AKL+GG
Sbjct:  154 DSAVGKMIAEAMEKVSTEGVITVEEGSSLHDELVVVEGMEFDRGYLSPYFVTNQEKMVAELDNPYILLHDKKISNIRDLLPTLEAVSKAGRPLLIIAEDVDGEALATLVINNMRGIVKATAIKAPGFGERRKAMLQDMAVLTGGTVISEEVGLTLENVTLDMLGETKSAVVGKDSTKLIDGAGAKADIEARCAQIRSQAENTTSEYDSEKLQERLAKLAGG 374          
BLAST of EY736420 vs. ExPASy Swiss-Prot
Match: CH60_PROVI (60 kDa chaperonin OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=groL PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.262e-56
Identity = 112/221 (50.68%), Postives = 156/221 (70.59%), Query Frame = 2
Query:   23 DDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSXKLAERIAKLSGG 685
            D  IG +IA+A+DKVG DGV+                GM+ DRGY+SP FVTN E +  E ++A +L+ D+KIS +K+++P+LEK  Q   PLLIIAED+ GEALATLVVNKLRG L V A+KAPGFG+RRKA+L DIAI+TG    + + G  +EN ++  LG A +V++ KD+TTI+    +++EI+ARI ++K ++ ++ S YD+ KL ER+AKLSGG
Sbjct:  155 DPEIGELIAEAMDKVGKDGVITVEEAKGMDTELKVVEGMQFDRGYLSPYFVTNSESMEAELDDALILIYDKKISNMKELLPILEKGAQSGRPLLIIAEDIEGEALATLVVNKLRGTLKVCAVKAPGFGDRRKAMLDDIAILTGGTVISEEKGYKLENATINYLGQAARVSLDKDNTTIVEGKGTQEEIKARINEIKGQIDKSTSDYDTEKLQERLAKLSGG 375          
BLAST of EY736420 vs. ExPASy Swiss-Prot
Match: CH60_CHLL2 (60 kDa chaperonin OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=groL PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.262e-56
Identity = 112/221 (50.68%), Postives = 156/221 (70.59%), Query Frame = 2
Query:   23 DDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSXKLAERIAKLSGG 685
            D  IG +IA+A+DKVG DGV+                GM+ DRGY+SP FVTNPE +  E E+  +L+ D+KI  +K+++P+LEK+ Q   PLLIIAED+ GEALATLVVNKLRG L V A+KAPGFG+RRKA+L+DIAI+TG    + + G  +EN ++  LG A +V I KD+TTI+    ++++I+ARI ++K ++ ++ S YD+ KL ER+AKLSGG
Sbjct:  155 DPEIGELIAEAMDKVGKDGVITVEEAKGMDTELKVVEGMQFDRGYLSPYFVTNPETMEAEIEDPLILIHDKKIGNMKELLPILEKSAQSGRPLLIIAEDIEGEALATLVVNKLRGTLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEEKGYKLENATLAYLGQAGRVNIDKDNTTIVEGKGTQEDIKARINEIKGQIDKSTSDYDTEKLQERLAKLSGG 375          
BLAST of EY736420 vs. ExPASy Swiss-Prot
Match: CH603_RHIL3 (60 kDa chaperonin 3 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=groL3 PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.262e-56
Identity = 109/221 (49.32%), Postives = 159/221 (71.95%), Query Frame = 2
Query:   23 DDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSXKLAERIAKLSGG 685
            D  IG  +A+A+++VG DGV+                GM+ DRGY+SP FVTN +K+ VEFE+  +L+ ++K+S ++ ++P+LE   Q   PLLIIAEDV GEALATLVVNKLRG L +AA+KAPGFG+RRKA+L+DIAI+T     + DLG+ +E+ +++ LG A+KV+I K++TTI+  + +K +I+ R+AQ++ ++ ET S YD  KL ER+AKL+GG
Sbjct:  155 DAEIGRFLAEAMERVGNDGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNADKMRVEFEDPYILIHEKKLSNLQSMLPVLEAVVQSSKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTAGTVISEDLGIKLESVTLDMLGRAKKVSIEKENTTIVDGSGAKSDIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGG 375          
BLAST of EY736420 vs. ExPASy Swiss-Prot
Match: CH60_STRMU (60 kDa chaperonin OS=Streptococcus mutans GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.442e-56
Identity = 101/218 (46.33%), Postives = 149/218 (68.35%), Query Frame = 2
Query:   32 IGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSXKLAERIAKLSGG 685
            +G  +++A++KVG DGV+                GM+ DRGY+S   VT+ EK++ + EN  +L+TD+KIS I+D++PLLE+  +   PLLIIA+DV GEAL TLV+NK+RG  NV A+KAPGFG+RRKA+L+DIA++TG      DLGL +++T+++ LG A +VT+ KDST I+  +  K+ +  R+  +K ++    S +D  KL ER+AKLSGG
Sbjct:  156 VGEYVSEAMEKVGNDGVITIEESRGMETELDVVEGMQFDRGYLSQYMVTDNEKMVADLENPYLLITDKKISNIQDVLPLLEEVLKTNRPLLIIADDVDGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAMLEDIAVLTGGTVITEDLGLELKDTTIDALGQAARVTVDKDSTVIVEGSGGKEAVANRVNLIKSQIETATSDFDREKLQERLAKLSGG 373          

HSP 2 Score: 34.2686 bits (77), Expect = 1.442e-56
Identity = 17/26 (65.38%), Postives = 19/26 (73.08%), Query Frame = 3
Query:  717 ETELDDRKLRFEDAKNATFAPIEGGI 794
            ETEL + KLR EDA NAT A +E GI
Sbjct:  384 ETELKEMKLRIEDALNATRAAVEEGI 409          
BLAST of EY736420 vs. ExPASy Swiss-Prot
Match: CH60_PSEPW (60 kDa chaperonin OS=Pseudomonas putida (strain W619) GN=groL PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.648e-56
Identity = 107/221 (48.42%), Postives = 158/221 (71.49%), Query Frame = 2
Query:   23 DDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSXKLAERIAKLSGG 685
            D+ IG +IA+A++KVG +GV+                GM+ DRGY+SP FV  P+ ++ E E+  +L+ D+KIS I++++P+LE   +   PLLI+AEDV GEALATLVVN +RGI+ VAA+KAPGFG+RRKA+LQDIA++TG +  + ++GL +E T++E LG A++V + K++TTII  A    +I+AR+ Q++ ++ ET S YD  KL ER+AKL+GG
Sbjct:  155 DNSIGEIIAEAMEKVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFVNKPDTMVAELESPLLLLVDKKISNIRELLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAVLTGGQVISEEIGLTLETTTLEHLGNAKRVILSKENTTIIDGAGVDADIEARVKQIRAQIEETSSDYDREKLQERLAKLAGG 375          
BLAST of EY736420 vs. ExPASy Swiss-Prot
Match: CH60_PSEPK (60 kDa chaperonin OS=Pseudomonas putida (strain KT2440) GN=groL PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.648e-56
Identity = 107/221 (48.42%), Postives = 157/221 (71.04%), Query Frame = 2
Query:   23 DDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSXKLAERIAKLSGG 685
            D+ IG +IA+A++KVG +GV+                GM+ DRGY+SP FV  P+ ++ E E   +L+ D+KIS I++++P+LE   +   PLLI+AEDV GEALATLVVN +RGI+ VAA+KAPGFG+RRKA+LQDIA++TG +  + ++GL +E  ++E LG A++V + K++TTII  A +  EI+AR+ Q++ ++ ET S YD  KL ER+AKL+GG
Sbjct:  155 DNSIGEIIAEAMEKVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFVNKPDTMVAELEGPLLLLVDKKISNIRELLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAVLTGGQVISEEIGLSLETATLEHLGNAKRVILSKENTTIIDGAGADTEIEARVKQIRAQIEETSSDYDREKLQERLAKLAGG 375          
BLAST of EY736420 vs. ExPASy Swiss-Prot
Match: CH60_PSEP1 (60 kDa chaperonin OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=groL PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.648e-56
Identity = 107/221 (48.42%), Postives = 157/221 (71.04%), Query Frame = 2
Query:   23 DDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSXKLAERIAKLSGG 685
            D+ IG +IA+A++KVG +GV+                GM+ DRGY+SP FV  P+ ++ E E   +L+ D+KIS I++++P+LE   +   PLLI+AEDV GEALATLVVN +RGI+ VAA+KAPGFG+RRKA+LQDIA++TG +  + ++GL +E  ++E LG A++V + K++TTII  A +  EI+AR+ Q++ ++ ET S YD  KL ER+AKL+GG
Sbjct:  155 DNSIGEIIAEAMEKVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFVNKPDTMVAELEGPLLLLVDKKISNIRELLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAVLTGGQVISEEIGLSLETATLEHLGNAKRVILSKENTTIIDGAGADTEIEARVKQIRAQIEETSSDYDREKLQERLAKLAGG 375          
BLAST of EY736420 vs. ExPASy Swiss-Prot
Match: CH60_METSS (60 kDa chaperonin OS=Methylovorus sp. (strain SS1 / DSM 11726) GN=groL PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.648e-56
Identity = 112/221 (50.68%), Postives = 155/221 (70.14%), Query Frame = 2
Query:   23 DDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSXKLAERIAKLSGG 685
            D  IG +IADA+DKVG +GV+                GM+ DRGY+SP F+ NPEK  VEF++  +L+ D+KIS+I+D++P LE   +   PLLIIAED+ GEALATLVVN +RGIL VAA+KAPGFG+RRKA+L+DIAI+TGA   + + G  +E  S+E LG A++V ++K++T II  A  +  I+AR+  ++ ++ E+ S YD  KL ER+AKLSGG
Sbjct:  155 DHPIGKIIADAMDKVGKEGVITVEDGKSLDNELDVVEGMQFDRGYLSPYFINNPEKQTVEFDDPLILLYDKKISSIRDLLPTLENVAKAGKPLLIIAEDLEGEALATLVVNSMRGILKVAAVKAPGFGDRRKAMLEDIAILTGATVISEETGKQLEKASLEDLGRAKRVELQKENTIIIDGAGEQKAIEARVKAIQAQIDESTSDYDREKLQERVAKLSGG 375          
BLAST of EY736420 vs. ExPASy Swiss-Prot
Match: CH60_LEPIN (60 kDa chaperonin OS=Leptospira interrogans GN=groL PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.648e-56
Identity = 110/221 (49.77%), Postives = 154/221 (69.68%), Query Frame = 2
Query:   23 DDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSXKLAERIAKLSGG 685
            D+ IG +IADA+DKVG DGV+                GM+ DRGYISP  VT+ E ++    +  +L+ D+KIS++KD+I +LEK  Q   PL+II+E+V GEALAT+VVN LR  ++  A+KAPGFG+RRK++L+DIAI+TG +  + DLG+ +ENT+++ LG A KVT+ K++TTII       EIQ RI Q+KK++ +T S YD  KL ER+AKL+GG
Sbjct:  154 DNTIGNLIADAMDKVGKDGVITVEEAKSIETTLDVVEGMQFDRGYISPYMVTDAESMVATLNDPFILIYDKKISSMKDLIHILEKVAQAGKPLVIISEEVEGEALATIVVNTLRKTISCVAVKAPGFGDRRKSMLEDIAILTGGQVISEDLGMKLENTTLQMLGRANKVTVDKENTTIIEGKGQTKEIQGRIGQIKKQIEDTTSEYDREKLQERLAKLAGG 374          
The following BLAST results are available for this feature:
BLAST of EY736420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_THICR1.262e-5649.3260 kDa chaperonin OS=Thiomicrospira crunogena (str... [more]
CH60_PROVI1.262e-5650.6860 kDa chaperonin OS=Prosthecochloris vibrioformis... [more]
CH60_CHLL21.262e-5650.6860 kDa chaperonin OS=Chlorobium limicola (strain D... [more]
CH603_RHIL31.262e-5649.3260 kDa chaperonin 3 OS=Rhizobium leguminosarum bv.... [more]
CH60_STRMU1.442e-5646.3360 kDa chaperonin OS=Streptococcus mutans GN=groL ... [more]
CH60_PSEPW1.648e-5648.4260 kDa chaperonin OS=Pseudomonas putida (strain W6... [more]
CH60_PSEPK1.648e-5648.4260 kDa chaperonin OS=Pseudomonas putida (strain KT... [more]
CH60_PSEP11.648e-5648.4260 kDa chaperonin OS=Pseudomonas putida (strain F1... [more]
CH60_METSS1.648e-5650.6860 kDa chaperonin OS=Methylovorus sp. (strain SS1 ... [more]
CH60_LEPIN1.648e-5649.7760 kDa chaperonin OS=Leptospira interrogans GN=gro... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-016-B04-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736420 ID=EY736420; Name=EY736420; organism=Citrus sinensis; type=EST; length=796bp
CACGCGTCCGCCCACGCGTCCGGATGACCTGATTGGGACAATGATCGCCG
ATGCAATTGACAAGGTTGGTCCTGATGGCGTCTTGTCAATCGAGTCATCA
TCATCATTTGAGACTACTGTTGAAGTTGAGGAAGGAATGGAGATTGACAG
GGGTTACATCTCTCCTCAGTTTGTCACAAACCCTGAGAAATTAATTGTTG
AATTTGAGAATGCTAGAGTGCTGGTCACGGATCAAAAAATTTCAGCAATA
AAGGATATAATTCCCTTGTTAGAGAAGACCACACAATTGAGAGCACCATT
GCTTATAATTGCTGAGGATGTCACAGGAGAGGCTTTGGCTACGTTAGTCG
TCAACAAGCTCAGGGGCATCCTTAATGTTGCTGCCATTAAAGCTCCTGGT
TTTGGCGAAAGAAGAAAAGCTCTCCTTCAAGATATTGCCATTGTGACTGG
AGCTGAGTTTCAAGCTGGAGACCTGGGCTTGCTTATTGAAAACACTTCAG
TTGAGCAGCTAGGTACAGCTAGAAAGGTGACCATCAGAAAGGACTCCACT
ACCATTATTGCTGATGCTGCATCAAAGGATGAAATACAAGCTAGAATTGC
ACAGCTGAAAAAGGAGTTGGCTGAGACGGATTCTGTNTATGACTCANAGA
AACTTGCTGAGAGAATTGCTAAATTGTCTGGCGGGGGTTGCTGTTATCTA
AGTTGGAGCTGCCCCAGAAACTGAGCTTGATGACCGTAAACTCCGTTTTG
AAGATGCCAAGAATGCGACTTTTGCCCCCATAGAAGGAGGGATTGT
back to top