EY736413

Overview
NameEY736413
Unique NameEY736413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736413 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4)

HSP 1 Score: 256.914 bits (655), Expect = 1.033e-67
Identity = 128/221 (57.92%), Postives = 162/221 (73.30%), Query Frame = 1
Query:   52 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDII 714
            MSHRK+E PRHG LGFLPRKRA+  R +VKAFPKDD SKP  LT+FLGYKAGMT IVRD+++PGSK HK+E  EAVT+++TPP+         +TPRGLRSL TVWA+HL++EV+RRFYKNW                 D     I+ +L ++KKY +V+RVL HTQIRK   L QKKAHL EIQ+NGGS+++KVD+A   FEK + +D+VF+++EMID I
Sbjct:    1 MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYAQDGA--GIERELARIKKYASVVRVLVHTQIRKTP-LAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAI 218          
BLAST of EY736413 vs. ExPASy Swiss-Prot
Match: RL3L_HUMAN (60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3)

HSP 1 Score: 255.373 bits (651), Expect = 3.005e-67
Identity = 124/221 (56.11%), Postives = 156/221 (70.59%), Query Frame = 1
Query:   52 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDII 714
            MSHRKF  PRHG LGFLP KR+ RHRGKVK +P+DDPS+P  LTAFLGYKAGMTH +R+V +PG K+ K+E  EAVTI+ETPPL          TPRGLRS  T++A+HL++E RRRFYK+W                  DGKK +Q     MKKYC VIRV+ HTQ+ K+   +QKKAH+MEIQ+NGG+VA+KV +A    EKQ+P+ +VF + E+ID+I
Sbjct:    1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQM-KLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVI 220          
BLAST of EY736413 vs. ExPASy Swiss-Prot
Match: RL3_KLULA (60S ribosomal protein L3 OS=Kluyveromyces lactis GN=RPL3 PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.925e-67
Identity = 124/221 (56.11%), Postives = 163/221 (73.76%), Query Frame = 1
Query:   52 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDII 714
            MSHRK+E PRHG LGFLPRKRA+  RG+VK+FPKDD +KP  LT+FLGYKAGM+ IVRD+++PGSK HK+E  EAVT+++TPP+         +TPRGLRSL TVWA+HL++EV+RRFYKNW                 +  + D   +L ++KKY +V+RVL HTQ+RK   L QKKAHL EIQ+NGGSV+ KVD+A   FEK + +D+VF+++EMID++
Sbjct:    1 MSHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDQTKPVALTSFLGYKAGMSTIVRDLDRPGSKFHKREVVEAVTVVDTPPIVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYAENGAQVD--RELARIKKYASVVRVLVHTQVRKTP-LSQKKAHLAEIQLNGGSVSDKVDWAKEHFEKTVAVDSVFEQNEMIDVV 218          
BLAST of EY736413 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3)

HSP 1 Score: 254.988 bits (650), Expect = 3.925e-67
Identity = 123/221 (55.66%), Postives = 157/221 (71.04%), Query Frame = 1
Query:   52 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDII 714
            MSHRKF  PRHG LGFLP KR+ RHRGKVK +P+DDPS+P  LTAFLGYKAGMTH +R+V +PG K+ K+E  EAVTI+ETPPL          TPRGLRS  T++A+HL++E RRRFYK+W                  DGKK +Q     MKKYC VIRV+ HTQ+ K+   +QKKAH+ME+Q+NGG+VA+KV +A    EKQ+P+ +VF ++E+ID+I
Sbjct:    1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKAFTKACKRWRDADGKKQLQKDFAAMKKYCKVIRVIVHTQM-KLLPFRQKKAHIMEVQLNGGTVAEKVAWAQARLEKQVPVHSVFSQNEIIDVI 220          
BLAST of EY736413 vs. ExPASy Swiss-Prot
Match: RL3_ENCCU (60S ribosomal protein L3 OS=Encephalitozoon cuniculi GN=RPL3-1 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.743e-36
Identity = 92/222 (41.44%), Postives = 124/222 (55.86%), Query Frame = 1
Query:   52 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVR-DVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDII 714
            MS RKF  PRHGSL F PRKR+   R    AFP DD S+P  LT F+ YKAGMTH+VR   +   +K   +E  +AVT++E PP+         KT  GLR L  V A ++++ V RR + N                         ++++E +K+    +RVL  TQ   +KGL  KKAH+ EIQVNGGS+++KV++A G  EK+I I  VF  +E ID I
Sbjct:    1 MSCRKFNAPRHGSLQFCPRKRSKTIRPAAGAFPADDRSQPVHLTGFMAYKAGMTHVVRTKTQVAKNKQLSREIMDAVTVLEAPPMVVYGIVGYEKTVTGLRRLPIVTAAYVSDGVLRRMFGNRYASKESAGQFCKGSV--------CESRVEMIKERAHCVRVLVQTQPTLIKGLGLKKAHIAEIQVNGGSISEKVEWALGRLEKEIAIGEVFGVNENIDTI 214          
BLAST of EY736413 vs. ExPASy Swiss-Prot
Match: RL3_AERPE (50S ribosomal protein L3P OS=Aeropyrum pernix GN=rpl3p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.846e-25
Identity = 83/224 (37.05%), Postives = 118/224 (52.68%), Query Frame = 1
Query:   52 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTP-RGLRSLCTVWAQHLNE-EVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGS-VAQKVDFAYGFFEKQIPIDAVFQKDEMIDII 714
            M  RK   PR GSLGF PRKRASR   +VK +P+ D  KP  L AFLGY+AGMTH+    ++PG     KE    VTI+ETPP+           P RG  SL   WAQ   E E++RR                    +TD   K ++ +L+K +     +R++A +Q +   GL +KK  L+EI+V G S V +  D+A       I ++ VF++ +++D+I
Sbjct:    1 MGARKKRAPRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRPGRPTSGKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRRI-------------STLGSFDTDKMLKSLEERLDKAED----VRLIAASQPKLAGGLSKKKPDLLEIKVGGVSDVTKLFDYAKDVLGNLIAVNDVFEEGQLVDVI 206          
BLAST of EY736413 vs. ExPASy Swiss-Prot
Match: RL3_METMP (50S ribosomal protein L3P OS=Methanococcus maripaludis GN=rpl3p PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.846e-22
Identity = 69/217 (31.80%), Postives = 108/217 (49.77%), Query Frame = 1
Query:   64 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDII 714
            K   PR GSL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S    +E    VT++ETP +         KT +GL++L  VWA+ L+ ++ R+                       + KK + A L+ + +  T +R + HT   K  G+ +KK  ++EI++ G SVA+++ +A     K + I  VF+  E+ID +
Sbjct:    4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNSSQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDSDLGRKL-----------------TLAKKEEKKTVDA-LDAVLEKATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTL 198          
BLAST of EY736413 vs. ExPASy Swiss-Prot
Match: RL3_METM7 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.023e-22
Identity = 70/217 (32.26%), Postives = 109/217 (50.23%), Query Frame = 1
Query:   64 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDII 714
            K   PR GSL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ETP +         KT +GL++L  VWA+ L+ ++ R+                       + KK   A L+ + +  T +RV+ HT   K  G+ +KK  ++EI++ G SVA+++ +A     K + I  VF+  E+ID +
Sbjct:    4 KKSRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDNDLGRKL-----------------TLVKKEEKKTADA-LDAVLEKATEVRVIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTL 198          
BLAST of EY736413 vs. ExPASy Swiss-Prot
Match: RL3_METVS (50S ribosomal protein L3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.568e-22
Identity = 71/219 (32.42%), Postives = 110/219 (50.23%), Query Frame = 1
Query:   64 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQA--QLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDII 714
            K   PR GSL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ETP +         KT +GL++L  VWA+  ++E+ R+                     T   K++I+    L+ + +    +RV+ HT   K  G+ +KK  ++EI+V G SVA+K+ +A     K + I+ VF+  E ID +
Sbjct:    4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLVENNPKSPNNGQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRKL--------------------TVTKKEEIKTVESLDAVLEKTVDLRVIVHTN-PKTTGIPKKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTL 198          
BLAST of EY736413 vs. ExPASy Swiss-Prot
Match: RL3_METVA (50S ribosomal protein L3P OS=Methanococcus vannielii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.568e-22
Identity = 71/219 (32.42%), Postives = 110/219 (50.23%), Query Frame = 1
Query:   64 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQA--QLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDII 714
            K   PR GSL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ETP +         KT +GL++L  VWA+  ++E+ R+                     T   K++I+    L+ + +    +RV+ HT   K  G+ +KK  ++EI+V G SVA+K+ +A     K + I+ VF+  E ID +
Sbjct:    4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLVENNPKSPNNGQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRKL--------------------TVTKKEEIKTVESLDAVLEKTVDLRVIVHTN-PKTTGIPKKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTL 198          
The following BLAST results are available for this feature:
BLAST of EY736413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RL3_YEAST1.033e-6757.9260S ribosomal protein L3 OS=Saccharomyces cerevisi... [more]
RL3L_HUMAN3.005e-6756.1160S ribosomal protein L3-like OS=Homo sapiens GN=R... [more]
RL3_KLULA3.925e-6756.1160S ribosomal protein L3 OS=Kluyveromyces lactis G... [more]
RL3L_BOVIN3.925e-6755.6660S ribosomal protein L3-like OS=Bos taurus GN=RPL... [more]
RL3_ENCCU2.743e-3641.4460S ribosomal protein L3 OS=Encephalitozoon cunicu... [more]
RL3_AERPE2.846e-2537.0550S ribosomal protein L3P OS=Aeropyrum pernix GN=r... [more]
RL3_METMP3.846e-2231.8050S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METM75.023e-2232.2650S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METVS8.568e-2232.4250S ribosomal protein L3P OS=Methanococcus vanniel... [more]
RL3_METVA8.568e-2232.4250S ribosomal protein L3P OS=Methanococcus vanniel... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-016-A07-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736413 ID=EY736413; Name=EY736413; organism=Citrus sinensis; type=EST; length=850bp
CACGCGTCCGGCCGCTTCATCAGCAACCCAAGAGTCTAAGTGCCGAGTAG
GATGTCTCATCGTAAGTTTGAACACCCAAGACATGGTTCTTTAGGATTTC
TCCCAAGGAAGAGAGCATCCCGCCACAGAGGAAAAGTGAAGGCCTTTCCC
AAGGATGACCCATCAAAACCATGCAGATTAACTGCTTTTTTAGGCTACAA
AGCTGGAATGACCCATATTGTCAGAGATGTTGAAAAGCCAGGATCAAAGC
TGCACAAGAAAGAAACATGTGAAGCAGTAACTATTATTGAAACACCACCC
CTGGTGGTTGTTGGGGTCGTTGGTTATGTCAAGACACCCCGTGGGCTTCG
TTCTCTCTGCACTGTTTGGGCTCAGCATCTCAATGAGGAGGTTAGGAGAA
GGTTTTACAAGAACTGGTGCAAATCGAAGAAGAAGGCCTTCACTAAGTAT
ACAAAGAAGTATGAAACTGATGATGGAAAGAAAGACATTCAGGCTCAGCT
GGAGAAAATGAAGAAATACTGCACCGTGATTCGTGTTTTGGCCCATACCC
AGATCAGAAAAATGAAGGGACTGAAGCAGAAGAAGGCCCATCTGATGGAG
ATCCAGGTCAATGGTGGATCAGTTGCCCAGAAGGTTGACTTTGCTTATGG
TTTCTTCGAGAAACAGATTCCTATTGATGCTGTGTTCCAGAAAGATGAGA
TGATTGACATTATTGGTGTGACCACAGGTTAGGGATATGAGGGTGTTGTT
AATCGCTTGGGGTGTGACTCCGTCTCCCTCGCTAGACTCACCGGTGGTCC
TACCCCAGGGTGCTTGTTATGCCCCCTTGGCATTCCGCTTGGGTCTCCTT
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