EY736406

Overview
NameEY736406
Unique NameEY736406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736406 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 5.905e-67
Identity = 80/97 (82.47%), Postives = 87/97 (89.69%), Query Frame = 2
Query:  308 SPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLINIADNPTCVQ-PLVCTQEENP-CPII 592
            +PIMMSAGELESGNAGEPAKLIRQRYREAAD+I+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATL+NIAD PT VQ P +  + ENP  PI+
Sbjct:  175 NPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVPIV 271          

HSP 2 Score: 120.939 bits (302), Expect = 5.905e-67
Identity = 54/64 (84.38%), Postives = 61/64 (95.31%), Query Frame = 3
Query:   27 RYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 218
            +Y+ DNT+ G YIAPAFMDKLVVH++KNFM+LPNIK+PLILGIWGGKGQGKSFQCELVFAKMGI
Sbjct:  111 KYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI 174          
BLAST of EY736406 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 4.940e-66
Identity = 80/97 (82.47%), Postives = 88/97 (90.72%), Query Frame = 2
Query:  308 SPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLINIADNPTCVQ-PLVCTQEENP-CPII 592
            +PIMMSAGELESGNAGEPAKLIRQRYREA+D+I+KGKM CL INDLDAGAGRMGGTTQYTVNNQMVNATL+NIADNPT VQ P +  +E+NP  PII
Sbjct:  181 TPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPII 277          

HSP 2 Score: 118.242 bits (295), Expect = 4.940e-66
Identity = 54/63 (85.71%), Postives = 58/63 (92.06%), Query Frame = 3
Query:   30 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 218
            YN DN +DG YIA  FMDKLVVH++KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI
Sbjct:  118 YNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 180          
BLAST of EY736406 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.862e-65
Identity = 78/97 (80.41%), Postives = 87/97 (89.69%), Query Frame = 2
Query:  308 SPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLINIADNPTCVQ-PLVCTQEENP-CPII 592
            +PIMMSAGELESGNAGEPAKLIRQRYREA+D+I+KGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATL+NIADNPT VQ P +  +E+N   PII
Sbjct:  189 NPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMCVLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPII 285          

HSP 2 Score: 120.553 bits (301), Expect = 1.862e-65
Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = 3
Query:   27 RYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 218
            +YN DN  DG YIAPAF+DKLVVHI KNFM+LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGI
Sbjct:  125 QYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGI 188          
BLAST of EY736406 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.862e-65
Identity = 80/97 (82.47%), Postives = 86/97 (88.66%), Query Frame = 2
Query:  308 SPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLINIADNPTCVQ-PLVCTQEENP-CPII 592
            +PIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATL+NIADNPT VQ P +  +EEN   PII
Sbjct:  187 NPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPII 283          

HSP 2 Score: 119.013 bits (297), Expect = 1.862e-65
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 3
Query:   36 LDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 218
            LDN  DG YIAPAF+DKLVVHITKNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI
Sbjct:  126 LDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 186          
BLAST of EY736406 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 2.211e-63
Identity = 77/97 (79.38%), Postives = 85/97 (87.63%), Query Frame = 2
Query:  308 SPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLINIADNPTCVQ-PLVCTQEENP-CPII 592
            +PIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDL+ GAGRMGGTTQYTVNNQMVNATL+NIADNPT VQ P +  +++N   PII
Sbjct:  183 NPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPII 279          

HSP 2 Score: 116.701 bits (291), Expect = 2.211e-63
Identity = 51/64 (79.69%), Postives = 60/64 (93.75%), Query Frame = 3
Query:   27 RYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 218
            +Y++DN +   YIAPAFMDKLVVHITKNF++LPNIK+PLILG+WGGKGQGKSFQCELVFAK+GI
Sbjct:  119 KYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGI 182          
BLAST of EY736406 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.277e-57
Identity = 77/97 (79.38%), Postives = 84/97 (86.60%), Query Frame = 2
Query:  308 SPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLINIADNPTCVQ-PLVCTQEENP-CPII 592
            +PI+MSAGELESGNAGEPAKLIR RYREA+DII+KG+MC L INDLDAGAGRMG TTQYTVNNQMVNATL+NIADNPT VQ P V   EE P  PI+
Sbjct:  158 APIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGRMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIV 254          

HSP 2 Score: 99.3673 bits (246), Expect = 1.277e-57
Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = 3
Query:   27 RYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 218
            R + +N  DG YI+PAF+DK+ +HI KNFM LP IKVPLILGIWGGKGQGK+FQC L + K+GI
Sbjct:   94 RASFNNIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGI 157          
BLAST of EY736406 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.354e-44
Identity = 59/89 (66.29%), Postives = 72/89 (80.90%), Query Frame = 2
Query:  317 MMSAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLINIADNPTCVQPLVCTQEENP 580
            ++S GELES +AG+PA+LIR RYRE A++I+ +GKMC LMINDLDAGAGR    TQYTVN Q+VNATL+NIADNPT VQ L  + + NP
Sbjct:   60 LISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQ-LPGSYDSNP 147          

HSP 2 Score: 87.0409 bits (214), Expect = 6.354e-44
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 3
Query:   60 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIK 221
            YIAP F+DKL VHITKNF+++P ++VPLILGI G KG+GK+FQCEL F KMGI+
Sbjct:    4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIE 57          
BLAST of EY736406 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 8.281e-44
Identity = 56/79 (70.89%), Postives = 67/79 (84.81%), Query Frame = 2
Query:  317 MMSAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLINIADNPTCVQ 550
            ++S GELES +AG+PA+LIR RYRE A++I+ +GKMC LMINDLDAGAGR    TQYTVN Q+VNATL+NIADNPT VQ
Sbjct:   60 LISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQ 138          

HSP 2 Score: 87.4261 bits (215), Expect = 8.281e-44
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 3
Query:   60 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIK 221
            YIAP F+DKL VHITKNF++LP ++VPLILGI G KG+GK+FQCEL F KMG++
Sbjct:    4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVE 57          
The following BLAST results are available for this feature:
BLAST of EY736406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCAA_HORVU5.905e-6782.47Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE4.940e-6682.47Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU1.862e-6580.41Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU1.862e-6582.47Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL2.211e-6379.38Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE1.277e-5779.38Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP6.354e-4466.29Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC8.281e-4470.89Ribulose bisphosphate carboxylase/oxygenase activa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-015-H10-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736406 ID=EY736406; Name=EY736406; organism=Citrus sinensis; type=EST; length=872bp
CACGCGTCCGTTTGATTTGATGATTTAGATACAACTTGGACAACACGATC
GACGGTCTCTACATTGCCCCTGCTTTCATGGACAAGCTTGTTGTTCACAT
CACCAAGAACTTCATGTCCCTGCCCAACATCAAGGTTCCTCTCATCTTGG
GTATTTGGGGAGGCAAAGGACAAGGAAAATCATTCCAATGTGAGCTTGTT
TTCGCCAAGATGGGCATCAAGTGAGTCCATACTCTCTTGTCATTTTTTTG
GGTTTGAGGATATGTTTGGTGCGTACTTACTCTGTGATGTTATGATAATG
AATTTTCAGCCCAATTATGATGAGTGCCGGAGAATTGGAAAGTGGCAATG
CTGGAGAACCCGCTAAGTTGATCAGGCAGAGGTACCGTGAGGCAGCTGAC
ATTATCAGGAAGGGAAAAATGTGCTGCCTCATGATCAATGATCTTGATGC
AGGAGCTGGTCGTATGGGTGGCACCACCCAGTACACAGTTAACAACCAAA
TGGTTAACGCCACACTCATAAACATTGCTGATAACCCAACTTGTGTCCAA
CCCCTGGTATGTACACAAGAGGAGAACCCCTGTCCCATCATATCACGGTA
TGACTCCACTTGTATCCCTCAGTGATGCGAGGCAAACCCTGGNCNCNCCC
CCCCCTCCCNCCTCGCGCGGCCTCGTTTCGCGCTGTCCCCCCCCTCGCGT
CTTTGCCGTGTGTCGTGCGGCGCGCCCCGACCCGCCGTCGGTCCAGAAAT
GACCAAGCCCGTCGACACCCCCCCCGGGCCCGCTCCTTGTCTTGTTTCTG
GACCCTCTGACGCGCACAATCTCTCCATTACCATCGCTCAAACAATCCAC
TCCTCCCCATCTCTCTACTCAT
back to top