EY736386 | Citrus Genome Database

Overview


Name	EY736386
Unique Name	EY736386
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	870

Libraries


Library Name	Type
Sweet orange fruit, development stadium (6 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_CRYPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryphonectria parasitica PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.912e-42
Identity = 82/137 (59.85%), Postives = 99/137 (72.26%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTY 768
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDS HG FKG +  V+ S L + GK ++ +++RDPA IPW + G DY+VES+GVFTT  KA AH+KGGAKKV+ISAPSADAPM+V+GVNEKTY
Sbjct:    4 KVGINGFGRIGRIVFRNAHEHSDVEIVAVNDPFIEPHYAAYMLKYDSQHGNFKGDV-TVEGSDLVVGGKKVRFYTERDPAAIPWSETGADYIVESTGVFTTTEKAKAHLKGGAKKVIISAPSADAPMYVMGVNEKTY 139

HSP 2 Score: 23.0978 bits (48), Expect = 2.912e-42
Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 3

Query:  783 IVSNGKCTTNGLLLLAR 833
            ++SN  CTTN L  LA+
Sbjct:  145 VISNASCTTNCLAPLAK 161

HSP 3 Score: 22.3274 bits (46), Expect = 2.912e-42
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K + +EF I+EG+
Sbjct:  156 LAPLAKVINDEFKIIEGL 173

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 3.305e-42
Identity = 85/140 (60.71%), Postives = 99/140 (70.71%), Query Frame = 1

Query:  355 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKP 774
            +K+GINGFGRIGRL                NDPFID  YM Y+FK+DSTHG FKGT+   +   L +NG+ I VFS+RDPA I W   G +Y+VES+GVFTTI KAS H+KGGAKKV+ISAPSADAPMFV GVN   YKP
Sbjct:    2 SKIGINGFGRIGRLVLRAAIDKGANVVAV-NDPFIDVNYMVYLFKFDSTHGRFKGTV-AAEGGFLVVNGQKITVFSERDPANINWASAGAEYIVESTGVFTTIDKASTHLKGGAKKVIISAPSADAPMFVCGVNLDAYKP 139

HSP 2 Score: 26.1794 bits (56), Expect = 3.305e-42
Identity = 12/27 (44.44%), Postives = 16/27 (59.26%), Query Frame = 3

Query:  774 NMNIVSNGKCTTNGLLLLARGFRRSLE 854
            +M +VSN  CTTN L  LA+    + E
Sbjct:  140 DMKVVSNASCTTNCLAPLAKVINDNFE 166

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 3.787e-42
Identity = 84/140 (60.00%), Postives = 97/140 (69.29%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKP 774
            K+GINGFGRIGRL                NDPFI   YMAYMFKYD+ HG +K   +KV D+ TL    K + VF  R+P EIPW + G +YVVES+GVFT   KA+AH+KGGAKKV+ISAPS DAPMFVVGVNEKTY P
Sbjct:    5 KIGINGFGRIGRLVARVALVRDDVELVAVNDPFITVDYMAYMFKYDTVHGQYKHHELKVKDEKTLLFGDKPVAVFGLRNPEEIPWAETGAEYVVESTGVFTEKEKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKTYTP 144

HSP 2 Score: 25.0238 bits (53), Expect = 3.787e-42
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 3

Query:  759 KDIQANMNIVSNGKCTTNGLLLLAR 833
            K    ++++VSN  CTTN L  LA+
Sbjct:  140 KTYTPDIDVVSNASCTTNCLAPLAK 164

HSP 3 Score: 23.0978 bits (48), Expect = 3.787e-42
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K + + FGI+EG+
Sbjct:  159 LAPLAKVIHDRFGIVEGL 176

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_DANRE (Glyceraldehyde-3-phosphate dehydrogenase OS=Danio rerio GN=gapdh PE=2 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 4.553e-42
Identity = 89/148 (60.14%), Postives = 104/148 (70.27%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPT*TLFLMAS 801
            KVGINGFGRIGRL                NDPFID  YM YMF+YDSTHG +KG +K  +   L I+G  I V+S+RDPA I WGD G  YVVES+GVFTTI KASAH+KGGAK+V+ISAPSADAPMFV+GVN + Y  + T+   AS
Sbjct:    3 KVGINGFGRIGRLVTRAAFLTKKVEIVAINDPFIDLDYMVYMFQYDSTHGKYKGEVKA-EGGKLVIDGHAITVYSERDPANIKWGDAGATYVVESTGVFTTIEKASAHIKGGAKRVIISAPSADAPMFVMGVNHEKYDNSLTVVSNAS 149

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.553e-42
Identity = 86/138 (62.32%), Postives = 99/138 (71.74%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYK 771
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG FKG IKV D + L +NGK ++   ++DPA IPW + G  YVVES+GVFTT  KA AH+KGGAKKVVISAPSADAPMFV+GVN +TYK
Sbjct:    4 KVGINGFGRIGRIVFRNAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSTHGQFKGDIKV-DGNNLTVNGKTVRFHMEKDPANIPWSETGAYYVVESTGVFTTTEKAKAHLKGGAKKVVISAPSADAPMFVMGVNHETYK 140

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.923e-42
Identity = 85/142 (59.86%), Postives = 97/142 (68.31%), Query Frame = 1

Query:  349 GNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYK 771
            G  K+GINGFGRIGRL                NDPFI   YM YMFKYD+ HG +K   +KV D+ TL    K + VF  R+P EIPWG+ G ++VVES+GVFTT  KASAH+KGGAKKVVISAPSADAPMFVVGVN   YK
Sbjct:    3 GKIKIGINGFGRIGRLVARVALARDDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHHELKVKDEKTLLFGEKPVTVFGCRNPEEIPWGETGAEFVVESTGVFTTKEKASAHLKGGAKKVVISAPSADAPMFVVGVNHTEYK 144

HSP 2 Score: 26.1794 bits (56), Expect = 4.923e-42
Identity = 11/24 (45.83%), Postives = 18/24 (75.00%), Query Frame = 3

Query:  762 DIQANMNIVSNGKCTTNGLLLLAR 833
            + +++++IVSN  CTTN L  LA+
Sbjct:  142 EYKSDIDIVSNASCTTNCLAPLAK 165

HSP 3 Score: 23.0978 bits (48), Expect = 4.923e-42
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K + + FGI+EG+
Sbjct:  160 LAPLAKVINDRFGIVEGL 177

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 4.923e-42
Identity = 85/144 (59.03%), Postives = 95/144 (65.97%), Query Frame = 1

Query:  343 SDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYK 771
            S G  K+GINGFGRIGRL                NDPFI   YM+YMFKYDS HG +K   + V D  TL    K + VF  R+P EIPWG+ G +YVVES+GVFT   KASAH+K GAKKVVISAPS DAPMFVVGVNE  YK
Sbjct:    3 STGKIKIGINGFGRIGRLVARVALTRDDIELVGVNDPFISTDYMSYMFKYDSVHGKWKHHEVNVKDSKTLLFGEKSVAVFGCRNPEEIPWGEVGAEYVVESTGVFTDKEKASAHLKAGAKKVVISAPSKDAPMFVVGVNEHQYK 146

HSP 2 Score: 27.7202 bits (60), Expect = 4.923e-42
Identity = 12/22 (54.55%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  768 QANMNIVSNGKCTTNGLLLLAR 833
            ++++NIVSN  CTTN L  LA+
Sbjct:  146 KSDVNIVSNASCTTNCLAPLAK 167

HSP 3 Score: 23.483 bits (49), Expect = 4.923e-42
Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K + ++FGI+EG+
Sbjct:  162 LAPLAKVINDKFGIVEGL 179

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 6.392e-42
Identity = 83/139 (59.71%), Postives = 94/139 (67.63%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYK 771
            K+GINGFGRIGRL                NDPFI   YM YMFKYDS HG +K   +KV D+ TL    + + VF  R+P EIPWG  G DYVVES+GVFT   KA+AH+KGGAKKV+ISAPS DAPMFVVGVNE  YK
Sbjct:    5 KIGINGFGRIGRLVARVILQSDDCELVAINDPFITTDYMTYMFKYDSVHGQWKHHELKVKDEKTLLFGERPVTVFGNRNPEEIPWGQTGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYK 143

HSP 2 Score: 28.1054 bits (61), Expect = 6.392e-42
Identity = 12/24 (50.00%), Postives = 17/24 (70.83%), Query Frame = 3

Query:  762 DIQANMNIVSNGKCTTNGLLLLAR 833
            + ++ +NIVSN  CTTN L  LA+
Sbjct:  141 EYKSELNIVSNASCTTNCLAPLAK 164

HSP 3 Score: 23.483 bits (49), Expect = 6.392e-42
Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = 2

Query:  815 LAPPCKGVQEEFGILEGV 868
            LAP  K + ++FGI+EG+
Sbjct:  159 LAPLAKVINDKFGIVEGL 176

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P_CLAPU (Glyceraldehyde-3-phosphate dehydrogenase OS=Claviceps purpurea GN=GPD-1 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 7.311e-42
Identity = 84/137 (61.31%), Postives = 99/137 (72.26%), Query Frame = 1

Query:  358 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTY 768
            KVGINGFGRIGR+                NDPFID +Y AYM KYDS+HGVFKG IK  D   L +NGK +K  ++RDP+ IPW   G +Y+VES+GVFTT  KA AH+ GGAKKV+ISAPSADAPM+V+GVNEKTY
Sbjct:    4 KVGINGFGRIGRIVFRNAVEHPEIEVVAVNDPFIDPEYAAYMLKYDSSHGVFKGEIKK-DADGLIVNGKKVKFHTERDPSAIPWKASGAEYIVESTGVFTTTEKAKAHLTGGAKKVIISAPSADAPMYVMGVNEKTY 139

HSP 2 Score: 24.2534 bits (51), Expect = 7.311e-42
Identity = 10/25 (40.00%), Postives = 14/25 (56.00%), Query Frame = 3

Query:  759 KDIQANMNIVSNGKCTTNGLLLLAR 833
            K      +++SN  CTTN L  LA+
Sbjct:  137 KTYDGKADVISNASCTTNCLAPLAK 161

[Close]

BLAST of EY736386 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 9.527e-42
Identity = 85/140 (60.71%), Postives = 98/140 (70.00%), Query Frame = 1

Query:  355 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTIKVVDDSTLEINGKLIKVFSKRDPAEIPWGD*GVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKP 774
            +K+GINGFGRIGRL                NDPFID  YM Y+FK+DSTHG FKGT+   +   L +NG+ I VFS+RDPA I W   G +YVVES+GVFTTI KAS H+KGGAKKV+ISAPSADAPMFV GVN   Y P
Sbjct:    2 SKIGINGFGRIGRLVLRAAIDKGASVVAV-NDPFIDVNYMVYLFKFDSTHGRFKGTV-AAEGGFLVVNGQKITVFSERDPANINWASAGAEYVVESTGVFTTIDKASTHLKGGAKKVIISAPSADAPMFVCGVNLDAYSP 139

HSP 2 Score: 26.1794 bits (56), Expect = 9.527e-42
Identity = 12/27 (44.44%), Postives = 16/27 (59.26%), Query Frame = 3

Query:  774 NMNIVSNGKCTTNGLLLLARGFRRSLE 854
            +M +VSN  CTTN L  LA+    + E
Sbjct:  140 DMKVVSNASCTTNCLAPLAKVINDNFE 166

The following BLAST results are available for this feature:

BLAST of EY736386 vs. ExPASy Swiss-Prot

BLAST of EY736386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 336


Match Name	E-value	Identity	Description
G3P_CRYPA	2.912e-42	59.85	Glyceraldehyde-3-phosphate dehydrogenase OS=Crypho...	[more]
G3P2_DROME	3.305e-42	60.71	Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros...	[more]
G3PC_CRAPL	3.787e-42	60.00	Glyceraldehyde-3-phosphate dehydrogenase, cytosoli...	[more]
G3P_DANRE	4.553e-42	60.14	Glyceraldehyde-3-phosphate dehydrogenase OS=Danio ...	[more]
G3P_CURLU	4.553e-42	62.32	Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul...	[more]
G3PC_RANAC	4.923e-42	59.86	Glyceraldehyde-3-phosphate dehydrogenase, cytosoli...	[more]
G3PC_PINSY	4.923e-42	59.03	Glyceraldehyde-3-phosphate dehydrogenase, cytosoli...	[more]
G3P_ATRNU	6.392e-42	59.71	Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl...	[more]
G3P_CLAPU	7.311e-42	61.31	Glyceraldehyde-3-phosphate dehydrogenase OS=Clavic...	[more]
G3P1_DROME	9.527e-42	60.71	Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-705-015-F11-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY736386 ID=EY736386; Name=EY736386; organism=Citrus sinensis; type=EST; length=870bp
CACGCGTCCGCGAAAGCCGCAACAACCCAAACCTCGTTAGGGTTTTTGCG
AGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGGCCTTCTCTT
CTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCCGACCTCACT
TCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGCTTTCAGTCG
CAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAAGTGGTTCAT
CTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAACCCATCAGA
GCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACGGAGTGATGG
AAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAAGGTTGGTTT
TGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCGGTCAATGAT
CCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTATGATTCTAC
TCATGGAGTTTTCAAGGGAACCATCAAGGTCGTGGATGACTCCACCTTAG
AAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGACCCGGCAGAG
ATCCCTTGGGGTGACTAGGGGGTTGATTATGTTGTTGAATCTTCTGGAGT
CTTTACAACAATTGCGAAGGCTTCAGCTCACATGAAGGGTGGTGCAAAAA
AGGTGGTAATATCAGCTCCATCAGCTGATGCACCAATGTTTGTGGTAGGA
GTGAATGAAAAGACATACAAGCCAACATGAACATTGTTTCTAATGGCAAG
TGTACAACCAATGGCTTGCTCCTCCTTGCAAGGGGGTTCAGGAGGAGTTT
GGAATTCTGGAAGGCGTAAG