EY736325

Overview
NameEY736325
Unique NameEY736325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736325 vs. ExPASy Swiss-Prot
Match: NCED9_ARATH (9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.135e-26
Identity = 69/183 (37.70%), Postives = 98/183 (53.55%), Query Frame = 3
Query:  126 PKNGVTSKVIDFVEKLIVKWMY------DSSQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLRAQLKVLDVSYGHGTGNTALVYHHGKLLPLSEGGQPY 653
            P     + V+D VE  ++           ++ P   ++GNF PVP E P   +L V G +P+C+ G +VR G NP   PV+G+H FDGDGM+H +R  +G  +Y  RF  T+RL QE   G   F K IG+L G  G+  + +   R    ++D + G G  N  LVY +G LL +SE   PY
Sbjct:  147 PVQRTAAMVLDAVENAMISHERRRHPHPKTADPAVQIAGNFFPVP-EKPVVHNLPVTGTVPECIQGVYVRNGANPLHKPVSGHHLFDGDGMVHAVRFDNGSVSYACRFTETNRLVQERECGRPVFPKAIGELHGHLGIAKLMLFNTRGLFGLVDPTGGLGVANAGLVYFNGHLLAMSEDDLPY 328          
BLAST of EY736325 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.416e-23
Identity = 76/210 (36.19%), Postives = 99/210 (47.14%), Query Frame = 3
Query:  195 SSQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQMLRAQLKVLDVSY----GHGTGNTALVYHHGKLLPLSEGGQPY--RGQGSGKREICHHWGSSTLDTDQTLPGAGPPRV*PHTRPQSVPLRYANRPP 806
            S  P H LS NFAPV DE PPT    + G LP  LNG ++R GPNP+F P   YH FDGDGM+H ++I +GKAT  SR+V+T +   E+  G      +    G  G+     +      +VL   Y    G G  NT+L +   +L  L E   PY  R   SG  E     G    D    +     P+  P T  ++   RY   PP
Sbjct:  104 SVDPKHVLSDNFAPVLDELPPTDCEIIHGTLPLSLNGAYIRNGPNPQFLPRGPYHLFDGDGMLHAIKIHNGKATLCSRYVKTYKYNVEKQTGAPVMPNV--FSGFNGVTASVARGALTAARVLTGQYNPVNGIGLANTSLAFFSNRLFALGESDLPYAVRLTESGDIETI---GRYDFDGKLAMSMTAHPKTDPIT-GETFAFRYGPVPP 307          
The following BLAST results are available for this feature:
BLAST of EY736325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
NCED9_ARATH1.135e-2637.709-cis-epoxycarotenoid dioxygenase NCED9, chloropla... [more]
CCD4_ARATH3.416e-2336.19Probable carotenoid cleavage dioxygenase 4, chloro... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-014-G10-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736325 ID=EY736325; Name=EY736325; organism=Citrus sinensis; type=EST; length=844bp
CCACGCGTCCGGACGCGCAGAGAGAGAGTCAGAGAGAGAGAGAGAGAGAG
AGAGTCATGGTGGAGAAAGAAAAGCTGGAGAACGACGTCGTAGCACGAAA
TGGAATAGTGGCGGTGGATCCGAAACCGAAGAATGGAGTGACTTCGAAAG
TGATAGACTTTGTGGAGAAACTGATAGTGAAGTGGATGTACGATTCTTCA
CAGCCTCTTCATTATCTCTCCGGTAACTTCGCTCCAGTTCCTGACGAGAC
TCCTCCTACTAAAGACCTCCACGTCATCGGCCATCTCCCCGATTGCTTGA
ATGGGGAGTTTGTCAGGGTTGGTCCTAATCCCAAGTTTGCCCCTGTGGCC
GGATACCACTGGTTTGATGGAGATGGCATGATTCATGGTCTGCGCATCAA
AGACGGAAAGGCTACATATGTCTCCCGTTTTGTGAGGACTTCACGTCTTA
AACAGGAAGAATTTTTCGGAGGTGCTAAATTTATGAAGATTGGAGACCTT
AAGGGGCTATTTGGATTACTCATGGTTAACATGCAAATGCTTAGAGCACA
GTTGAAAGTACTGGATGTCTCATATGGACATGGGACAGGTAATACAGCTC
TTGTATATCACCATGGGAAACTTCTACCCCTCTCAGAGGGCGGACAACCC
TATCGCGGCCAAGGTTCTGGGAAGAGGGAAATCTGCCACCACTGGGGCTC
CTCGACTCTGGACACGGATCAGACGCTGCCTGGAGCCGGCCCCCCCCGCG
TGTGACCCCACACCCGCCCCCAAAGTGTACCTTTGCGATACGCCAACCGC
CCGCCACTATCTCCTTCCGCCCTTTTTCGCCGCGGATCTCGCGG
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