EY736156

Overview
NameEY736156
Unique NameEY736156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736156 vs. ExPASy Swiss-Prot
Match: YGJH_ECOLI (tRNA-binding protein ygjH OS=Escherichia coli (strain K12) GN=ygjH PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.347e-16
Identity = 45/101 (44.55%), Postives = 65/101 (64.36%), Query Frame = 1
Query:  136 ARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERV 438
            ARL++RVGKI +V++H +AD LY+ ++DVG+   +TV S LV +   EE+  + V VLCNL+   MRG  S  M+LCA T D ++  L+ P +    G RV
Sbjct:   10 ARLEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTS-LVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERMMPAGVRV 109          
BLAST of EY736156 vs. ExPASy Swiss-Prot
Match: SYM_THEON (Methionyl-tRNA synthetase OS=Thermococcus onnurineus (strain NA1) GN=metG PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.121e-16
Identity = 43/100 (43.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:  139 RLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERV 438
            +LD+RVGKI  VQ HP+AD LYV ++D+G  + R +V+GL K+   +++  R V ++ NL+P  +RGI+S  M+L A   +N  V L+ P K  K+G R+
Sbjct:  636 KLDLRVGKIVDVQDHPNADKLYVVKVDLGN-EVRQLVAGLKKYYSKDDLLNRYVVIIANLEPKKLRGIESQGMLLAADDGEN--VALLMPDKEVKLGARI 732          
BLAST of EY736156 vs. ExPASy Swiss-Prot
Match: SYM_PYRKO (Methionyl-tRNA synthetase OS=Pyrococcus kodakaraensis GN=metG PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.191e-15
Identity = 43/101 (42.57%), Postives = 67/101 (66.34%), Query Frame = 1
Query:  136 ARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERV 438
            A+LD+RVGKI +V  HP+AD LYV ++D+G+ + R +V+GL K+   EE+    V ++ NL+P  +RG++S  M+L A   D  +V L+ P K  K+G R+
Sbjct:  643 AKLDLRVGKIIEVNDHPNADRLYVVKVDLGD-EVRQLVAGLKKYYKPEELLGHYVVIIANLEPKKLRGVESQGMLLAA--DDGERVALLMPDKEVKLGARI 740          
BLAST of EY736156 vs. ExPASy Swiss-Prot
Match: SYM_NANEQ (Methionyl-tRNA synthetase OS=Nanoarchaeum equitans GN=metG PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.005e-14
Identity = 43/104 (41.35%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  127 ISIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERV 438
            +  A+LD+RVGKI  VQ HP+AD LY+ ++ +G  Q +T+V GL ++   EE+  + V ++ NLKP  +RGI S  M+L A   D  +V L+ P K   +G +V
Sbjct:  675 LDFAKLDMRVGKIIDVQDHPNADKLYIIKVSLGNKQ-KTLVGGLKQYYKKEELIGKYVVLINNLKPKQLRGITSEGMLLAA--DDGKEVALLMPDKPISLGSKV 775          
BLAST of EY736156 vs. ExPASy Swiss-Prot
Match: SYM_TREDE (Methionyl-tRNA synthetase OS=Treponema denticola GN=metG PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.537e-14
Identity = 41/102 (40.20%), Postives = 65/102 (63.73%), Query Frame = 1
Query:  124 EISIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTK---VELVEPPKSA 420
            E+   ++ ++  KI  V++HPDAD LY+E++D G  + RT++SGLV  +  +E+  + V +  NLKP  MRGI+S  M+L AS  D  +   VEL++ P +A
Sbjct:  620 ELFSKKIALKTAKIISVERHPDADKLYIEKLDDGSGEERTILSGLVPFLKEDEILGKTVIIADNLKPRKMRGIESKGMLLAASWYDEEEKEHVELLQAPWAA 721          
BLAST of EY736156 vs. ExPASy Swiss-Prot
Match: SYM_BACTN (Methionyl-tRNA synthetase OS=Bacteroides thetaiotaomicron GN=metG PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.227e-13
Identity = 42/100 (42.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:  139 RLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERV 438
            +LDIRVG I + QK P AD L   +ID G ++ RT+VSG+ KH   EE+  + VC + NL P  ++GI S  M+L A  +D + + ++ P K  K G  V
Sbjct:  581 KLDIRVGTILECQKVPKADKLLQFKIDDG-LETRTIVSGIAKHYQPEELVGKQVCFIANLAPRKLKGIVSEGMILSAENNDGS-LAVIMPQKEVKPGSEV 678          
BLAST of EY736156 vs. ExPASy Swiss-Prot
Match: SYM_BACFR (Methionyl-tRNA synthetase OS=Bacteroides fragilis GN=metG PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.118e-12
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:  139 RLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERV 438
            +LDIRVG + + QK P AD L   +ID G ++ RT+VSG+ +H   EE+  + VC + NL P  ++GI S  M+L A  +D + + +V P +  K G  V
Sbjct:  581 KLDIRVGTVLECQKVPKADKLLQFKIDDG-LETRTIVSGIAQHYKPEELVGKQVCFIANLAPRKLKGIVSEGMILSAENNDGS-LAVVMPGREVKPGSEV 678          
BLAST of EY736156 vs. ExPASy Swiss-Prot
Match: SYM_BACFN (Methionyl-tRNA synthetase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=metG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.118e-12
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:  139 RLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERV 438
            +LDIRVG + + QK P AD L   +ID G ++ RT+VSG+ +H   EE+  + VC + NL P  ++GI S  M+L A  +D + + +V P +  K G  V
Sbjct:  581 KLDIRVGTVLECQKVPKADKLLQFKIDDG-LETRTIVSGIAQHYKPEELVGKQVCFIANLAPRKLKGIVSEGMILSAENNDGS-LAVVMPGREVKPGSEV 678          
BLAST of EY736156 vs. ExPASy Swiss-Prot
Match: SYM_PARD8 (Methionyl-tRNA synthetase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=metG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.363e-11
Identity = 40/100 (40.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:  139 RLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERV 438
            +LDIRVG + +  K P AD L    ID G ++ RT+VSG+ +H   EE+  + VC + NL P  ++GI S  M+L A   D  K+ ++ P K  K G  V
Sbjct:  581 KLDIRVGTVLECVKVPKADKLLQFRIDDG-LEKRTIVSGIAQHYKPEELVGKQVCFIANLAPRKLKGIVSEGMILSAENFDG-KLAVITPEKEVKPGSEV 678          
BLAST of EY736156 vs. ExPASy Swiss-Prot
Match: SYM_PORGI (Methionyl-tRNA synthetase OS=Porphyromonas gingivalis GN=metG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.965e-11
Identity = 38/100 (38.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:  139 RLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERV 438
            +LDIRVG + + +K P AD L    ID G +  RT+VSG+ KH   EE+  + VC + NL P  ++GI+S  M+L A  +D + + ++ P      G +V
Sbjct:  582 KLDIRVGTVLECEKVPKADKLLRFRIDDG-LSGRTIVSGIAKHYAPEELVGKQVCFIANLPPRKLKGIESEGMILSAEDADGS-LRVIMPAAEVAAGSQV 679          
The following BLAST results are available for this feature:
BLAST of EY736156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
YGJH_ECOLI5.347e-1644.55tRNA-binding protein ygjH OS=Escherichia coli (str... [more]
SYM_THEON9.121e-1643.00Methionyl-tRNA synthetase OS=Thermococcus onnurine... [more]
SYM_PYRKO1.191e-1542.57Methionyl-tRNA synthetase OS=Pyrococcus kodakaraen... [more]
SYM_NANEQ5.005e-1441.35Methionyl-tRNA synthetase OS=Nanoarchaeum equitans... [more]
SYM_TREDE8.537e-1440.20Methionyl-tRNA synthetase OS=Treponema denticola G... [more]
SYM_BACTN7.227e-1342.00Methionyl-tRNA synthetase OS=Bacteroides thetaiota... [more]
SYM_BACFR6.118e-1240.00Methionyl-tRNA synthetase OS=Bacteroides fragilis ... [more]
SYM_BACFN6.118e-1240.00Methionyl-tRNA synthetase OS=Bacteroides fragilis ... [more]
SYM_PARD81.363e-1140.00Methionyl-tRNA synthetase OS=Parabacteroides dista... [more]
SYM_PORGI3.965e-1138.00Methionyl-tRNA synthetase OS=Porphyromonas gingiva... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-F05-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736156 ID=EY736156; Name=EY736156; organism=Citrus sinensis; type=EST; length=848bp
CCACGCGTCCGAAATGTAAGCGTTTTTTATAGAATCTTATTGTCTGTAGT
AGATGGTGGTGGAAAGAAACAAAAGTCAGCAAAATCTACAGCTGGAGCCA
AATCAAAAACCACTGCTGAACCAGAAATTTCGATTGCAAGACTTGATATC
CGTGTTGGAAAAATTACAAAAGTTCAAAAACATCCTGATGCCGATGCACT
GTATGTAGAAGAAATTGATGTGGGTGAAGTACAGCCTCGAACAGTAGTTA
GTGGCCTTGTCAAGCATATACCTCTTGAAGAGATGCAGGAGAGAATGGTC
TGTGTTCTTTGCAATCTGAAACCAGTAGCAATGAGGGGAATCAAATCACA
TGCAATGGTTCTTTGTGCTTCAACCAGTGATAACACCAAGGTTGAATTGG
TTGAGCCACCAAAATCTGCAAAAATTGGAGAAAGAGTTGCATTTCCTGGG
TTTGAAGGCGAGCCTGATGATGTGTTAAACCCTAAGAAGAAGGTTTGGGA
GACAGTGCAAGTGGATTTACACACTAACACCGAGCTGGTGGCCTGCTATA
AAGATATTCCTTTCACGACATCAGCTGGTATTTGCACTGTTTCCTCCATT
CAAAGTGGGTCTATACGGTAGCTCGACTTCTTCAATCATTGGAAAGCGAG
AATTCCTAATCTTCTGATTGTGTNAACTTTGCTTTTTTATCCTAATGACT
TTTCTCGTTGTGTGAAATGGTGTATGTGGACCAAATTTTGGTGTCAGAAT
AGACTAGATTATGTCGTGGCCTCATTAGTGTGACCTTTCCCCCCCATTAG
AAGAAAACCATTGGCTCGAACCATGGACCAGTTGAATCACGATCTTAT
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