EY736154

Overview
NameEY736154
Unique NameEY736154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736154 vs. ExPASy Swiss-Prot
Match: CRTI_SOLLC (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Solanum lycopersicum GN=PDS PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.181e-16
Identity = 54/207 (26.09%), Postives = 99/207 (47.83%), Query Frame = 3
Query:   90 DSISFSDWFLSKGGTQTSIQRMWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLQRSKPLRRALGLXNLLYTPDAHFSCFADLAL 710
            D IS  DW   +G        ++  ++ AL FI+ D +S +C+L     F  +   S +  L G+P   L  PI ++I  KGG+  L    ++I  ++  + ++++        +D   ++ DA+V A  V   K LLP  W+E+ +F  +  LVGVPV+ V + ++  +    D              +LL++  +  S +AD+++
Sbjct:  259 DGISVKDWMRKQGVPDRVTDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVEHIESKGGQVRLNSRIKKIELNEDGSVKSFI-------LSDGSAIEGDAFVFAAPVDIFKLLLPEDWKEIPYFQKLEKLVGVPVINVHIWFDRKLKNTYD--------------HLLFSRSSLLSVYADMSV 444          
BLAST of EY736154 vs. ExPASy Swiss-Prot
Match: CRTI_CAPAN (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Capsicum annuum GN=PDS PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.181e-16
Identity = 55/207 (26.57%), Postives = 96/207 (46.38%), Query Frame = 3
Query:   90 DSISFSDWFLSKGGTQTSIQRMWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLQRSKPLRRALGLXNLLYTPDAHFSCFADLAL 710
            D IS  DW   +G        ++  ++ AL FI+ D +S +C+L     F  +   S +  L G+P   L  PI ++I  KGG+  L    ++I  ++  + + ++         D   ++ DA+V A  V   K LLP  W+E+ +F  +  LVGVPV+ V + ++  +    D              NLL++     S +AD+++
Sbjct:  258 DGISVKDWMRKQGVPDRVTDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVEHIESKGGQVRLNSRIKKIELNEDGSVKCFI-------LNDGSTIEGDAFVFATPVDIFKLLLPEDWKEIPYFQKLEKLVGVPVINVHIWFDRKLKNTSD--------------NLLFSRSPLLSVYADMSV 443          
BLAST of EY736154 vs. ExPASy Swiss-Prot
Match: CRTI_SOYBN (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Glycine max GN=PDS1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.000e-15
Identity = 57/207 (27.54%), Postives = 97/207 (46.86%), Query Frame = 3
Query:   90 DSISFSDWFLSKGGTQTSIQRMWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLQRSKPLRRALGLXNLLYTPDAHFSCFADLAL 710
            D +S  +W   +G  +     ++  ++ AL FI+ D +S +C+L     F  +   S +  L G+P   L  PI  YI   GG  HL    ++I      N +  VK   ++     KV++ DAYV A  V  +K LLP +W+ + +F  +  LVGVPV+ V + ++  +    D              +LL++     S +AD+++
Sbjct:  246 DGLSVQEWMKKQGVPERVADEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDYIQSLGGEVHLNSRIQKI----ELNDDGTVKSFLLNNG---KVMEGDAYVFATPVDILKLLLPDNWKGIPYFQRLDKLVGVPVINVHIWFDRKLKNTYD--------------HLLFSRSPLLSVYADMSV 431          
BLAST of EY736154 vs. ExPASy Swiss-Prot
Match: CRTI_NARPS (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=PDS1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.909e-15
Identity = 55/207 (26.57%), Postives = 95/207 (45.89%), Query Frame = 3
Query:   90 DSISFSDWFLSKGGTQTSIQRMWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLQRSKPLRRALGLXNLLYTPDAHFSCFADLAL 710
            D ++ ++W   +G        ++  ++ AL FI+ D +S +C+L     F  +   S +  L G+P   L  PI  +I   GGR  L    ++I  +     + +V G       +  ++  DAYV A  V  +K LLP  WRE+ +F  +  LVGVPV+ V + ++  +    D              +LL+T     S +AD+++
Sbjct:  245 DGLTVTEWMRRQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHIQSLGGRAQLNSRLQKIELNPDGTVKHFVLG-------NGNIITGDAYVVAAPVDILKLLLPQEWREIPYFQKLDKLVGVPVINVHIWFDRKLKNTYD--------------HLLFTRSPLLSVYADMSV 430          
BLAST of EY736154 vs. ExPASy Swiss-Prot
Match: CRTI_MAIZE (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Zea mays GN=PDS1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.963e-15
Identity = 56/207 (27.05%), Postives = 95/207 (45.89%), Query Frame = 3
Query:   90 DSISFSDWFLSKGGTQTSIQRMWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLQRSKPLRRALGLXNLLYTPDAHFSCFADLAL 710
            D ++ S+W   +G        ++  ++ AL FI+ D +S +C+L     F  +   S +  L G+P   L  PI  +I  +GG   L    ++I      N +  VK  A+S  T    +  DAYV A  V   K L+P  W E+ +F  +  LVGVPV+ V + ++  +    D              +LL++  +  S +AD+++
Sbjct:  244 DGLTVSEWMKKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHIRSRGGEVRLNSRIKKI----ELNPDGTVKHFALSDGTQ---ITGDAYVCATPVDIFKLLVPQEWSEITYFKKLEKLVGVPVINVHIWFDRKLNNTYD--------------HLLFSRSSLLSVYADMSV 429          
BLAST of EY736154 vs. ExPASy Swiss-Prot
Match: CRTI_ARATH (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=PDS PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.106e-14
Identity = 53/207 (25.60%), Postives = 95/207 (45.89%), Query Frame = 3
Query:   90 DSISFSDWFLSKGGTQTSIQRMWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLQRSKPLRRALGLXNLLYTPDAHFSCFADLAL 710
            D +S  +W   +G  +     ++  ++ AL FI+ D +S +C+L     F  +   S +  L G+P   L  P+  +I   GG   L    ++I  +     ++++        T+   V+ DAYV A  V  +K LLP  W+E+ +F  +  LVGVPV+ V + ++  +    D              +LL++     S +AD++L
Sbjct:  240 DGLSVKEWMEKQGVPERVTDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPVVDHIRSLGGEVQLNSRIKKIELNDDGTVKSFL-------LTNGSTVEGDAYVFAAPVDILKLLLPDPWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTYD--------------HLLFSRSNLLSVYADMSL 425          
BLAST of EY736154 vs. ExPASy Swiss-Prot
Match: CRTI_ORYSJ (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. japonica GN=PDS PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 3.217e-14
Identity = 55/207 (26.57%), Postives = 95/207 (45.89%), Query Frame = 3
Query:   90 DSISFSDWFLSKGGTQTSIQRMWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLQRSKPLRRALGLXNLLYTPDAHFSCFADLAL 710
            D  + S+W   +G        ++  ++ AL FI+ D +S +C+L     F  +   S +  L G+P   L  PI  ++   GG   L    ++I      N +  VK  A+   TD   +  DAYV A  V  +K L+P  W+E+ +F  +  LVGVPV+ V + ++  +    D              +LL++  +  S +AD+++
Sbjct:  252 DGFTVSEWMKKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHVRSLGGEVRLNSRIQKI----ELNPDGTVKHFAL---TDGTQITGDAYVFATPVDILKLLVPQEWKEISYFKKLEKLVGVPVINVHIWFDRKLKNTYD--------------HLLFSRSSLLSVYADMSV 437          
BLAST of EY736154 vs. ExPASy Swiss-Prot
Match: CRTI_ORYSI (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. indica GN=PDS1 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 3.217e-14
Identity = 55/207 (26.57%), Postives = 95/207 (45.89%), Query Frame = 3
Query:   90 DSISFSDWFLSKGGTQTSIQRMWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLQRSKPLRRALGLXNLLYTPDAHFSCFADLAL 710
            D  + S+W   +G        ++  ++ AL FI+ D +S +C+L     F  +   S +  L G+P   L  PI  ++   GG   L    ++I      N +  VK  A+   TD   +  DAYV A  V  +K L+P  W+E+ +F  +  LVGVPV+ V + ++  +    D              +LL++  +  S +AD+++
Sbjct:  252 DGFTVSEWMKKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHVRSLGGEVRLNSRIQKI----ELNPDGTVKHFAL---TDGTQITGDAYVFATPVDILKLLVPQEWKEISYFKKLEKLVGVPVINVHIWFDRKLKNTYD--------------HLLFSRSSLLSVYADMSV 437          
The following BLAST results are available for this feature:
BLAST of EY736154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CRTI_SOLLC1.181e-1626.09Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_CAPAN1.181e-1626.57Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_SOYBN1.000e-1527.54Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_NARPS2.909e-1526.57Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_MAIZE4.963e-1527.05Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_ARATH1.106e-1425.60Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_ORYSJ3.217e-1426.57Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_ORYSI3.217e-1426.57Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-E12-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736154 ID=EY736154; Name=EY736154; organism=Citrus sinensis; type=EST; length=896bp
CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGTTGTAAAGGCACTT
GTTGATCCTGATGGAGCCTTGAAGGACATACGAGATTTGGATAGTATAAG
CTTCTCTGATTGGTTTTTGTCCAAGGGTGGTACACAGACGAGTATTCAAA
GAATGTGGGATCCTGTTGCCTATGCCCTTGGGTTTATTGATTGTGATAAC
ATCAGTGCTCGTTGTATGCTTACTATATTTGCACTGTTTGCGACTAAGAC
TGAGGCTTCCCTATTGCGGATGCTCAAGGGTTCTCCAGATGTTTATTTGA
GTGGGCCCATAAGAAAATATATCACAGATAAAGGGGGCAGGTTCCATCTT
AGGTGGGGATGCAGAGAGATACTTTATGATAAAGCTGCTAATGCGGAAAC
ATATGTCAAAGGACTTGCCATGTCTAAGGCCACTGACAAGAAGGTTGTGC
AAGCTGATGCATATGTTGCAGCATGTGATGTCCCTGGAATTAAAAGATTG
CTTCCCTCATCATGGAGGGAAATGAAATTTTTCAACAATATTTATGCGCT
AGTTGGAGTTCCTGTTGTCACAGTGCAGCTTAGATACAATGGTTGGGTTA
CTGAGTTGCAAGACCTACAACGGTCAAAGCCATTGAGGCGAGCTCTGGGG
TTANATAACCTTTTGTATACTCCAGATGCACATTTCTCTTGCTTTGCAGA
TCTAGCGCTCGCTGCGCCCGGAAGAGTACTAGAGAAAAAGGGCAAGGGTC
ATGACTCCCATGTGTTTGGAGGCCTGGCGAGCAGGAAATGCTCCTACCAA
ACGGATAAACATCGNGGGGAGTCGGCGAGCAGAGGGTAGGTGGTATGGCG
GTCGAGCCGGAGGGGCAAAAGTGATTGGGCCCGGTGGGGGGGAAGA
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