EY736153

Overview
NameEY736153
Unique NameEY736153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736153 vs. ExPASy Swiss-Prot
Match: CRTI_SOYBN (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Glycine max GN=PDS1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.930e-14
Identity = 48/162 (29.63%), Postives = 78/162 (48.15%), Query Frame = 3
Query:   90 DSISFSDWFLSKGGTQTSIQRMWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAGCDVPGIKKWLPSSWREMKFFNHMDALMGVAVVTV 575
            D +S  +W   +G  +     ++  ++ AL FI+ D +S +C+L     F  +   S +  L G+P   L  PI  YI   GG  HL    ++I      N +  VK   ++     KV++ DAYV    V  +K  LP +W+ + +F  +D L+GV V+ V
Sbjct:  246 DGLSVQEWMKKQGVPERVADEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDYIQSLGGEVHLNSRIQKI----ELNDDGTVKSFLLNNG---KVMEGDAYVFATPVDILKLLLPDNWKGIPYFQRLDKLVGVPVINV 400          
BLAST of EY736153 vs. ExPASy Swiss-Prot
Match: CRTI_SOLLC (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Solanum lycopersicum GN=PDS PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.930e-14
Identity = 44/162 (27.16%), Postives = 79/162 (48.77%), Query Frame = 3
Query:   90 DSISFSDWFLSKGGTQTSIQRMWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAGCDVPGIKKWLPSSWREMKFFNHMDALMGVAVVTV 575
            D IS  DW   +G        ++  ++ AL FI+ D +S +C+L     F  +   S +  L G+P   L  PI ++I  KGG+  L    ++I  ++  + ++++        +D   ++ DA+V    V   K  LP  W+E+ +F  ++ L+GV V+ V
Sbjct:  259 DGISVKDWMRKQGVPDRVTDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVEHIESKGGQVRLNSRIKKIELNEDGSVKSFI-------LSDGSAIEGDAFVFAAPVDIFKLLLPEDWKEIPYFQKLEKLVGVPVINV 413          
BLAST of EY736153 vs. ExPASy Swiss-Prot
Match: CRTI_CAPAN (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Capsicum annuum GN=PDS PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.016e-13
Identity = 44/162 (27.16%), Postives = 77/162 (47.53%), Query Frame = 3
Query:   90 DSISFSDWFLSKGGTQTSIQRMWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAGCDVPGIKKWLPSSWREMKFFNHMDALMGVAVVTV 575
            D IS  DW   +G        ++  ++ AL FI+ D +S +C+L     F  +   S +  L G+P   L  PI ++I  KGG+  L    ++I  ++  + + ++         D   ++ DA+V    V   K  LP  W+E+ +F  ++ L+GV V+ V
Sbjct:  258 DGISVKDWMRKQGVPDRVTDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVEHIESKGGQVRLNSRIKKIELNEDGSVKCFI-------LNDGSTIEGDAFVFATPVDIFKLLLPEDWKEIPYFQKLEKLVGVPVINV 412          
BLAST of EY736153 vs. ExPASy Swiss-Prot
Match: CRTI_NARPS (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=PDS1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.662e-13
Identity = 45/162 (27.78%), Postives = 76/162 (46.91%), Query Frame = 3
Query:   90 DSISFSDWFLSKGGTQTSIQRMWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAGCDVPGIKKWLPSSWREMKFFNHMDALMGVAVVTV 575
            D ++ ++W   +G        ++  ++ AL FI+ D +S +C+L     F  +   S +  L G+P   L  PI  +I   GGR  L    ++I  +     + +V G       +  ++  DAYV    V  +K  LP  WRE+ +F  +D L+GV V+ V
Sbjct:  245 DGLTVTEWMRRQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHIQSLGGRAQLNSRLQKIELNPDGTVKHFVLG-------NGNIITGDAYVVAAPVDILKLLLPQEWREIPYFQKLDKLVGVPVINV 399          
BLAST of EY736153 vs. ExPASy Swiss-Prot
Match: CRTI_ARATH (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=PDS PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.707e-12
Identity = 43/162 (26.54%), Postives = 76/162 (46.91%), Query Frame = 3
Query:   90 DSISFSDWFLSKGGTQTSIQRMWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAGCDVPGIKKWLPSSWREMKFFNHMDALMGVAVVTV 575
            D +S  +W   +G  +     ++  ++ AL FI+ D +S +C+L     F  +   S +  L G+P   L  P+  +I   GG   L    ++I  +     ++++        T+   V+ DAYV    V  +K  LP  W+E+ +F  +D L+GV V+ V
Sbjct:  240 DGLSVKEWMEKQGVPERVTDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPVVDHIRSLGGEVQLNSRIKKIELNDDGTVKSFL-------LTNGSTVEGDAYVFAAPVDILKLLLPDPWKEIPYFKKLDKLVGVPVINV 394          
BLAST of EY736153 vs. ExPASy Swiss-Prot
Match: CRTI_MAIZE (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Zea mays GN=PDS1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.803e-12
Identity = 46/162 (28.40%), Postives = 75/162 (46.30%), Query Frame = 3
Query:   90 DSISFSDWFLSKGGTQTSIQRMWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAGCDVPGIKKWLPSSWREMKFFNHMDALMGVAVVTV 575
            D ++ S+W   +G        ++  ++ AL FI+ D +S +C+L     F  +   S +  L G+P   L  PI  +I  +GG   L    ++I      N +  VK  A+S  T    +  DAYV    V   K  +P  W E+ +F  ++ L+GV V+ V
Sbjct:  244 DGLTVSEWMKKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHIRSRGGEVRLNSRIKKI----ELNPDGTVKHFALSDGTQ---ITGDAYVCATPVDIFKLLVPQEWSEITYFKKLEKLVGVPVINV 398          
BLAST of EY736153 vs. ExPASy Swiss-Prot
Match: CRTI_ORYSJ (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. japonica GN=PDS PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.887e-11
Identity = 45/162 (27.78%), Postives = 75/162 (46.30%), Query Frame = 3
Query:   90 DSISFSDWFLSKGGTQTSIQRMWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAGCDVPGIKKWLPSSWREMKFFNHMDALMGVAVVTV 575
            D  + S+W   +G        ++  ++ AL FI+ D +S +C+L     F  +   S +  L G+P   L  PI  ++   GG   L    ++I      N +  VK  A+   TD   +  DAYV    V  +K  +P  W+E+ +F  ++ L+GV V+ V
Sbjct:  252 DGFTVSEWMKKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHVRSLGGEVRLNSRIQKI----ELNPDGTVKHFAL---TDGTQITGDAYVFATPVDILKLLVPQEWKEISYFKKLEKLVGVPVINV 406          
BLAST of EY736153 vs. ExPASy Swiss-Prot
Match: CRTI_ORYSI (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. indica GN=PDS1 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.887e-11
Identity = 45/162 (27.78%), Postives = 75/162 (46.30%), Query Frame = 3
Query:   90 DSISFSDWFLSKGGTQTSIQRMWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAGCDVPGIKKWLPSSWREMKFFNHMDALMGVAVVTV 575
            D  + S+W   +G        ++  ++ AL FI+ D +S +C+L     F  +   S +  L G+P   L  PI  ++   GG   L    ++I      N +  VK  A+   TD   +  DAYV    V  +K  +P  W+E+ +F  ++ L+GV V+ V
Sbjct:  252 DGFTVSEWMKKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHVRSLGGEVRLNSRIQKI----ELNPDGTVKHFAL---TDGTQITGDAYVFATPVDILKLLVPQEWKEISYFKKLEKLVGVPVINV 406          
The following BLAST results are available for this feature:
BLAST of EY736153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CRTI_SOYBN6.930e-1429.63Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_SOLLC6.930e-1427.16Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_CAPAN2.016e-1327.16Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_NARPS7.662e-1327.78Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_ARATH1.707e-1226.54Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_MAIZE3.803e-1228.40Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_ORYSJ1.887e-1127.78Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_ORYSI1.887e-1127.78Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-E11-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736153 ID=EY736153; Name=EY736153; organism=Citrus sinensis; type=EST; length=880bp
CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGTTGTAAAGGCACTT
GTTGATCCTGATGGAGCCTTGAAGGACATACGAGATTTGGATAGTATAAG
CTTCTCTGATTGGTTTTTGTCCAAGGGTGGTACACAGACGAGTATTCAAA
GAATGTGGGATCCTGTTGCCTATGCCCTTGGGTTTATTGATTGTGATAAC
ATCAGTGCTCGTTGTATGCTTACTATATTTGCACTGTTTGCGACTAAGAC
TGAGGCTTCCCTATTGCGGATGCTCAAGGGTTCTCCAGATGTTTATTTGA
GTGGGCCCATAAGAAAATATATCACAGATAAAGGGGGCAGGTTCCATCTT
AGGTGGGGATGCAGAGAGATACTTTATGATAAAGCTGCTAATGCGGAAAC
ATATGTCAAAGGACTTGCCATGTCTAAGGCCACTGACAAGAAGGTTGTGC
AAGCTGATGCATATGTTGCAGGATGTGATGTCCCTGGAATTAAAAAATGG
CTTCCCTCATCATGGAGGGAAATGAAATTTTTCAACCATATGGATGCGCT
AATGGGAGTCGCTGTTGTCACAGTGCAGGGGAGATAGCATGGTGGGGTCT
CTGAGGTGCCACACCTACAACGGGCTAGGCGAGTCATGCGAACTCTGGGT
GTCAGAAACCCTCACGCACGACCCCGAGGCGGAGGTTGCGTGGGTCGGGG
GATCGGGCGACGACTTTGGGGGAAAGATGGGTAGGGAGGGGGGGACGCGG
AGAAAAGCGGACGAGGAGAGGGTCCCTGGAGGGGGGGCGAGTGGGGTCGC
CCGAGTTGGCCCACTCACAACCGACCGCGAGAGGCGGGGGCGCGGCCGGG
CGGGCCCCCCCGGCCGCGCGCGCAAGCGGC
back to top