EY736111

Overview
NameEY736111
Unique NameEY736111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.610e-65
Identity = 106/146 (72.60%), Postives = 122/146 (83.56%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEV 455
            M SSM+ S+  AT  RAS AQ+SMVAPFTGLKS+SAFP T+K N D++ + SNGGRVQCMKVWP  G+KKFETLSYLP + DEAL+K+I YLLRS WIPCLEF   KG+V+RE+H SPGYYDGRYWTMWKLPM+GCTDA QV KEV
Sbjct:    1 MVSSMMVSSA-ATFTRASPAQSSMVAPFTGLKSASAFPVTRKPNADLSHLPSNGGRVQCMKVWPIEGVKKFETLSYLPTMKDEALVKQIEYLLRSKWIPCLEF-CPKGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEV 144          

HSP 2 Score: 51.9878 bits (123), Expect = 4.610e-65
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 1
Query:  460 EVXKEYPHSFVRIIGX*HKRQVQCISFLAAKPPG 561
            E  KEYPH+F+RIIG  + RQVQCISF+A KP G
Sbjct:  146 ECKKEYPHAFIRIIGFDNNRQVQCISFIAYKPTG 179          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.022e-64
Identity = 102/146 (69.86%), Postives = 123/146 (84.25%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEV 455
            MASS++SS  VAT +R   AQASMVAPFTGLKS+  FPATKK N+DITS+ASNGGRVQCMKVWP   +K++ETLSYLPPL+ + L +++ YLL + W+PCLEFE + G+VYREHH+SPGYYDGRYWTMWKLPM+GCTD  QVL E+
Sbjct:    1 MASSVLSSAAVATVSRTP-AQASMVAPFTGLKSTVGFPATKK-NDDITSLASNGGRVQCMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNEL 144          

HSP 2 Score: 48.1358 bits (113), Expect = 1.022e-64
Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = 1
Query:  460 EVXKEYPHSFVRIIGX*HKRQVQCISFLAAKPPG 561
            E  KEYP++F+RIIG    RQVQC+SF+A KP G
Sbjct:  146 ECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAG 179          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.333e-64
Identity = 105/156 (67.31%), Postives = 126/156 (80.77%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIPTF 485
            MASSM++ST  A   RA  AQ+SMVAPF GL+SS AFPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+PC+EF  E G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV       P +
Sbjct:    1 MASSMMAST--AAVARAGPAQSSMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEY 153          

HSP 2 Score: 46.2098 bits (108), Expect = 1.333e-64
Identity = 22/32 (68.75%), Postives = 24/32 (75.00%), Query Frame = 1
Query:  460 EVXKEYPHSFVRIIGX*HKRQVQCISFLAAKP 555
            E  K YP  FVRIIG  +KRQVQCISF+A KP
Sbjct:  145 EAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 2.955e-64
Identity = 101/150 (67.33%), Postives = 122/150 (81.33%), Query Frame = 3
Query:   30 MISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIP 479
            +I S+  A A   + AQASM+APFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS+E LL+E+ YLL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV       P
Sbjct:    4 LIMSSAAAVATGTNAAQASMIAPFTGLKSATSFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSEEQLLREVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYP 153          

HSP 2 Score: 44.2838 bits (103), Expect = 2.955e-64
Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 1
Query:  460 EVXKEYPHSFVRIIGX*HKRQVQCISFLAAKPPG 561
            E  K YP +++RIIG  + RQVQCISF+A KP G
Sbjct:  147 EAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 5.686e-64
Identity = 120/159 (75.47%), Postives = 133/159 (83.65%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIPT-FIR 491
            MA SMISS TVA  +RAS AQ+SMVAPFT LKS+SAFP T+KTNNDITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR   IPCLEFELE G+VYREH+ SPGYYDGRYWTMWKLPM+GC D++QVLKE+       P+ FIR
Sbjct:    1 MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIR 159          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.115e-63
Identity = 103/156 (66.03%), Postives = 124/156 (79.49%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIPTF 485
            MASSM++ST  A   R   AQ +MVAPF GL+SS AFPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+PC+EF  E G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV       P +
Sbjct:    1 MASSMMAST--AAVARVGPAQTNMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEY 153          

HSP 2 Score: 46.2098 bits (108), Expect = 1.115e-63
Identity = 22/32 (68.75%), Postives = 24/32 (75.00%), Query Frame = 1
Query:  460 EVXKEYPHSFVRIIGX*HKRQVQCISFLAAKP 555
            E  K YP  FVRIIG  +KRQVQCISF+A KP
Sbjct:  145 EAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.267e-63
Identity = 121/161 (75.16%), Postives = 136/161 (84.47%), Query Frame = 3
Query:   18 MASSMISSTTVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIP-TFIR 491
            MASSMISS TVAT  A+R + AQA MVAPF GLKSSSAFP T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE+ YLLR  W+PCLEFELE G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKE+       P +FIR
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIR 160          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 1.895e-63
Identity = 106/154 (68.83%), Postives = 123/154 (79.87%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIP 479
            MAS M   +  A   R + AQASMVAPFTGLKS SAFP TKK+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YLL +GW+PCLEFE   G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+       P
Sbjct:    1 MASMM---SNAAVVGRTTPAQASMVAPFTGLKSVSAFPVTKKSN-DITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYP 150          

HSP 2 Score: 43.1282 bits (100), Expect = 1.895e-63
Identity = 20/32 (62.50%), Postives = 23/32 (71.88%), Query Frame = 1
Query:  460 EVXKEYPHSFVRIIGX*HKRQVQCISFLAAKP 555
            E  K YP +F RIIG  + RQVQCISF+A KP
Sbjct:  144 EAKKAYPEAFTRIIGFDNVRQVQCISFIAYKP 175          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 2.161e-63
Identity = 113/156 (72.44%), Postives = 132/156 (84.62%), Query Frame = 3
Query:   27 SMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIP-TFIR 491
            ++ISS  V T NRAS AQA++VAPFTGLKSS+ FP TKKTNNDITSIASNGGRV CM+VWPP G KKFETLSYLPPL++E L KE+ YL+R GWIPCLEFELEKG+VYRE+H SPGYYDGRYWTMW+LP++G TD++QVLKE+       P +FIR
Sbjct:    2 ALISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIR 157          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.686e-63
Identity = 121/161 (75.16%), Postives = 136/161 (84.47%), Query Frame = 3
Query:   18 MASSMISSTTVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIP-TFIR 491
            MASSMISS TVAT  A+R + AQA MVAPFTGLKSSSA P T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE+ YLLR  W+PCLEFELE G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKE+       P +FIR
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIR 160          
The following BLAST results are available for this feature:
BLAST of EY736111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
RBS_MUSAC4.610e-6572.60Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_SPIOL1.022e-6469.86Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS5_LEMGI1.333e-6467.31Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS2_NICSY2.955e-6467.33Ribulose bisphosphate carboxylase small chain S41,... [more]
RBS_BETVE5.686e-6475.47Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS6_LEMGI1.115e-6366.03Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS_PYRPY1.267e-6375.16Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_MESCR1.895e-6368.83Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_MEDSA2.161e-6372.44Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP3.686e-6375.16Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-B02-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736111 ID=EY736111; Name=EY736111; organism=Citrus sinensis; type=EST; length=889bp
CCACGCGTCCGGTACCAATGGCTTCCTCAATGATCTCATCGACCACCGTT
GCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTT
CACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACA
ATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAG
GTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCC
GCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCT
CCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTAC
CGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAAT
GTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGG
AGGTTNGGGGAGGTCCANAAGGAATACCCACATTCATTCGTCCGAATTAT
CGGATNNTGACACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCA
AGCCACCAGGCGTCTAGGTTCCCAATTAAATGTGTGTAACCACCCATGCA
AAATTGTTGATTATTATTATGGTGTAACCCCCATAATGATCATTCGATCA
NTGGGGGGGTTCGGGTTGGCGTTTAATTTGGACTTAGGCCGGTTGTTGCT
GCTGCTCAGACCTTTTGTGGGTCTCTCCCCGAATTTTGGCTTTTTTTTTA
TATATATTTTAATAAATGGAATCCTTTGTTCCCAGCTCCATCAATCTGGG
TCCCGGATGTTCAGTTAAGGAGGTTAGAGTGTCTGGAATTTAGAAAACAA
AAAAAGGGGGGCCGCTCTTCAAGGATCCATCCTCGCTCT
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