EY736111

Overview
NameEY736111
Unique NameEY736111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.686e-63
Identity = 109/141 (77.30%), Postives = 123/141 (87.23%), Query Frame = 3
Query:   33 ISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEV 455
            ISS+ +AT NR +  QAS+ APFTGLKS+ AFP TKK NND +S+ SNGGRVQCMKVWPP GLKK+ETLSYLPPLSDEAL KEI YL+R+ WIPCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GCTD+ QV+KEV
Sbjct:    4 ISSSAIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEV 144          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 8.211e-63
Identity = 112/146 (76.71%), Postives = 125/146 (85.62%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEV 455
            MASSM+S+ TVA+ NR S AQA+MVAPFTGLKS+  FP T+KTN+DITSI SNGG+VQCMKVWP  G+KKFETLSYLPPL+ E L  E+ YLLRSGWIPCLEFELE G VYREH   PGYYDGRYWTMWKLPM+GCTDA QVLKE+
Sbjct:    1 MASSMLSTATVASINRVSPAQATMVAPFTGLKSTPVFPTTRKTNSDITSITSNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKEL 146          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.215e-62
Identity = 101/156 (64.74%), Postives = 125/156 (80.13%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIPTF 485
            MASSM++ST  A   RA  AQ++MVAPF GL+SS AFPAT+K N +++++ SNGG+V CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+PC+EF  E G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV       P +
Sbjct:    1 MASSMMAST--AAVARAGPAQSNMVAPFNGLRSSVAFPATRKANKNLSTLPSNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEY 153          

HSP 2 Score: 46.2098 bits (108), Expect = 1.215e-62
Identity = 22/32 (68.75%), Postives = 24/32 (75.00%), Query Frame = 1
Query:  460 EVXKEYPHSFVRIIGX*HKRQVQCISFLAAKP 555
            E  K YP  FVRIIG  +KRQVQCISF+A KP
Sbjct:  145 EAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 2.934e-61
Identity = 101/156 (64.74%), Postives = 122/156 (78.21%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIPTF 485
            MASSM++ST  A A RA  AQ +MV PF   +SS  FPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+PC+EF  E G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV       P +
Sbjct:    1 MASSMMASTAAAVA-RAGPAQTNMV-PFNACRSSVPFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEY 153          

HSP 2 Score: 46.2098 bits (108), Expect = 2.934e-61
Identity = 22/32 (68.75%), Postives = 24/32 (75.00%), Query Frame = 1
Query:  460 EVXKEYPHSFVRIIGX*HKRQVQCISFLAAKP 555
            E  K YP  FVRIIG  +KRQVQCISF+A KP
Sbjct:  145 EAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.825e-61
Identity = 100/144 (69.44%), Postives = 123/144 (85.42%), Query Frame = 3
Query:   24 SSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEV 455
            +S++S+  V TA+ A  AQA+MVAPF+GLKS+SAFP ++K+N DITS+A+NGGRV CM+VWPP  LKKFETLSYLP LS+E+LLKEI+YLL  GW+PCLEFE+    VYRE++ SPGYYDGRYWTMWKLPM+GCTDA+QV  EV
Sbjct:    2 ASLMSNAAVVTASTA--AQANMVAPFSGLKSTSAFPVSRKSNVDITSLATNGGRVNCMQVWPPRNLKKFETLSYLPTLSEESLLKEINYLLIKGWVPCLEFEVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEV 143          

HSP 2 Score: 41.9726 bits (97), Expect = 3.825e-61
Identity = 20/32 (62.50%), Postives = 23/32 (71.88%), Query Frame = 1
Query:  460 EVXKEYPHSFVRIIGX*HKRQVQCISFLAAKP 555
            E    YP + VRIIG  +KRQVQCISF+A KP
Sbjct:  145 ECKNAYPDAHVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.884e-61
Identity = 117/159 (73.58%), Postives = 125/159 (78.62%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIP-TFIR 491
            MASSMISS  V T NRA    A  VAPFTGLKS + FP T+KTNNDI SIASNGGRVQCM+VWP TG KKFETLSYLP L D  L KE+ YLLR GWIPCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GCTDA+QVLKE+       P  FIR
Sbjct:    1 MASSMISSPAVTTVNRAG---AGTVAPFTGLKSMAGFP-TRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNAFIR 155          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 7.685e-61
Identity = 117/159 (73.58%), Postives = 126/159 (79.25%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIPT-FIR 491
            MASSMISS  V T NRA    A MVAPFTGLKS + FP T+KTNNDITSIASNGGRVQCM+VWPP G KKFETLSYLP L D  L KE+ YLLR GWIPCLEFELE G+VYREH+ SP YYDGRYWTMWKLPM+GCTDA+QVLKE+       P  FIR
Sbjct:    1 MASSMISSPAVTTVNRAG---AGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVWPPIGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPXYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIR 155          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS3_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.106e-60
Identity = 100/156 (64.10%), Postives = 122/156 (78.21%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIPTF 485
            MASSM++ST  A A RA  AQ+SMV PF   +SS  FPAT+K NN+++++  NGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+PC+EF  E G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV       P +
Sbjct:    1 MASSMMASTAAAVA-RAGPAQSSMV-PFNACRSSVPFPATRKANNNLSTLPGNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEY 153          

HSP 2 Score: 46.2098 bits (108), Expect = 1.106e-60
Identity = 22/32 (68.75%), Postives = 24/32 (75.00%), Query Frame = 1
Query:  460 EVXKEYPHSFVRIIGX*HKRQVQCISFLAAKP 555
            E  K YP  FVRIIG  +KRQVQCISF+A KP
Sbjct:  145 EAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 2.236e-60
Identity = 111/146 (76.03%), Postives = 124/146 (84.93%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEV 455
            MASSM+SS  V T    S AQA+MVAPFTGLKSS+AFP T+KTN DITSIASNGGRV CMKVWPP G KKFETLSYLP LSD  L KE+ YLLR+ WIPC+EFELE G+VYREH ++PGYYDGRYWTMWKLP++GCTD+ QVLKEV
Sbjct:    1 MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEV 142          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 2.236e-60
Identity = 112/159 (70.44%), Postives = 130/159 (81.76%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIP-TFIR 491
            MASSM+SS  VAT NR   AQASMVAPF GLKS +AFP TKK NNDITS+A+NGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YLL +GW+PCLEFE   G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+       P  FIR
Sbjct:    1 MASSMVSSAAVATVNRTP-AQASMVAPFNGLKSVAAFPVTKK-NNDITSVATNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIR 157          
The following BLAST results are available for this feature:
BLAST of EY736111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
RBS_LACSA3.686e-6377.30Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MANES8.211e-6376.71Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_LEMGI1.215e-6264.74Ribulose bisphosphate carboxylase small chain SSU2... [more]
RBS4_LEMGI2.934e-6164.74Ribulose bisphosphate carboxylase small chain SSU4... [more]
RBS_SILPR3.825e-6169.44Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GLYTA5.884e-6173.58Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SOYBN7.685e-6173.58Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS3_LEMGI1.106e-6064.10Ribulose bisphosphate carboxylase small chain SSU4... [more]
RBS3B_ARATH2.236e-6076.03Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS1_MESCR2.236e-6070.44Ribulose bisphosphate carboxylase small chain 1, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-B02-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736111 ID=EY736111; Name=EY736111; organism=Citrus sinensis; type=EST; length=889bp
CCACGCGTCCGGTACCAATGGCTTCCTCAATGATCTCATCGACCACCGTT
GCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTT
CACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACA
ATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAG
GTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCC
GCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCT
CCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTAC
CGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAAT
GTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGG
AGGTTNGGGGAGGTCCANAAGGAATACCCACATTCATTCGTCCGAATTAT
CGGATNNTGACACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCA
AGCCACCAGGCGTCTAGGTTCCCAATTAAATGTGTGTAACCACCCATGCA
AAATTGTTGATTATTATTATGGTGTAACCCCCATAATGATCATTCGATCA
NTGGGGGGGTTCGGGTTGGCGTTTAATTTGGACTTAGGCCGGTTGTTGCT
GCTGCTCAGACCTTTTGTGGGTCTCTCCCCGAATTTTGGCTTTTTTTTTA
TATATATTTTAATAAATGGAATCCTTTGTTCCCAGCTCCATCAATCTGGG
TCCCGGATGTTCAGTTAAGGAGGTTAGAGTGTCTGGAATTTAGAAAACAA
AAAAAGGGGGGCCGCTCTTCAAGGATCCATCCTCGCTCT
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