EY735911

Overview
NameEY735911
Unique NameEY735911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length333
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY735911 vs. ExPASy Swiss-Prot
Match: MDTC_ECO27 (Multidrug resistance protein mdtC OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=mdtC PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.926e-24
Identity = 52/108 (48.15%), Postives = 79/108 (73.15%), Query Frame = 3 
Query:    6 ENERLAAWANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTF 329
            ++ R A   N   A+LL I++ P AN+I+ VD I+A LP +   +PA +D+ +  DR+ TIRAS+++V+  L+I++ALV++V FLFLR   ATIIP++AVP+SL+GTF
Sbjct:  267 QDVRNAGMTNAKPAILLMIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTF 374
[Close]
BLAST of EY735911 vs. ExPASy Swiss-Prot
Match: MDTC_SHISS (Multidrug resistance protein mdtC OS=Shigella sonnei (strain Ss046) GN=mdtC PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.739e-24
Identity = 51/108 (47.22%), Postives = 80/108 (74.07%), Query Frame = 3 
Query:    6 ENERLAAWANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTF 329
            ++ R A   N   A+LL I++ P AN+I+ VD I+A LP + + +PA +D+ +  DR+ TIRAS+++V+  L+I++ALV++V FLFLR   ATIIP+++VP+SL+GTF
Sbjct:  267 QDVRNAGMTNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVALVILVVFLFLRSGRATIIPAVSVPVSLIGTF 374
[Close]
BLAST of EY735911 vs. ExPASy Swiss-Prot
Match: MDTC_PHOLL (Multidrug resistance protein mdtC OS=Photorhabdus luminescens subsp. laumondii GN=mdtC PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.739e-24
Identity = 54/108 (50.00%), Postives = 79/108 (73.15%), Query Frame = 3 
Query:    6 ENERLAAWANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTF 329
            +N R A  +    A+LL I+R+ GAN+I  V+RI+  LP++ +++PA + + V  DRT TIRAS+ +V+  L+IAI LV++V FLFLR   AT+IP+IAVP+SL+GTF
Sbjct:  267 QNVRAAGMSGGEPAILLIIRREAGANIIATVNRIREQLPALHESIPASIQLKVAQDRTPTIRASIVEVERALVIAIGLVILVVFLFLRSGRATLIPAIAVPVSLIGTF 374
[Close]
BLAST of EY735911 vs. ExPASy Swiss-Prot
Match: MDTC_PECCP (Multidrug resistance protein mdtC OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=mdtC PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.739e-24
Identity = 54/108 (50.00%), Postives = 77/108 (71.30%), Query Frame = 3 
Query:    6 ENERLAAWANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTF 329
            +N R A  AN   A+L+ I+R P AN+I  VD I+A +P +  +LPA + + V  DR+ TIRAS+ +V+  L+IA+ALV++V FLFLR   AT IP++AVP+SL+GTF
Sbjct:  267 QNSRNAGMANAKPAILVMIRRAPDANIITTVDNIRAAMPELRASLPAEIQLDVAQDRSPTIRASLAEVEQSLVIAVALVILVVFLFLRSGRATAIPALAVPVSLIGTF 374
[Close]
BLAST of EY735911 vs. ExPASy Swiss-Prot
Match: MDTC_ECOLI (Multidrug resistance protein mdtC OS=Escherichia coli (strain K12) GN=mdtC PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.739e-24
Identity = 51/108 (47.22%), Postives = 80/108 (74.07%), Query Frame = 3 
Query:    6 ENERLAAWANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTF 329
            ++ R A   N   A+LL I++ P AN+I+ VD I+A LP + + +PA +D+ +  DR+ TIRAS+++V+  L+I++ALV++V FLFLR   ATIIP+++VP+SL+GTF
Sbjct:  267 QDVRNAGMTNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVALVILVVFLFLRSGRATIIPAVSVPVSLIGTF 374
[Close]
BLAST of EY735911 vs. ExPASy Swiss-Prot
Match: MDTC_ECOLC (Multidrug resistance protein mdtC OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=mdtC PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.739e-24
Identity = 51/108 (47.22%), Postives = 80/108 (74.07%), Query Frame = 3 
Query:    6 ENERLAAWANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTF 329
            ++ R A   N   A+LL I++ P AN+I+ VD I+A LP + + +PA +D+ +  DR+ TIRAS+++V+  L+I++ALV++V FLFLR   ATIIP+++VP+SL+GTF
Sbjct:  267 QDVRNAGMTNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVALVILVVFLFLRSGRATIIPAVSVPVSLIGTF 374
[Close]
BLAST of EY735911 vs. ExPASy Swiss-Prot
Match: MDTC_ECOHS (Multidrug resistance protein mdtC OS=Escherichia coli O9:H4 (strain HS) GN=mdtC PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.739e-24
Identity = 51/108 (47.22%), Postives = 80/108 (74.07%), Query Frame = 3 
Query:    6 ENERLAAWANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTF 329
            ++ R A   N   A+LL I++ P AN+I+ VD I+A LP + + +PA +D+ +  DR+ TIRAS+++V+  L+I++ALV++V FLFLR   ATIIP+++VP+SL+GTF
Sbjct:  267 QDVRNAGMTNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVALVILVVFLFLRSGRATIIPAVSVPVSLIGTF 374
[Close]
BLAST of EY735911 vs. ExPASy Swiss-Prot
Match: MDTC_ECODH (Multidrug resistance protein mdtC OS=Escherichia coli (strain K12 / DH10B) GN=mdtC PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.739e-24
Identity = 51/108 (47.22%), Postives = 80/108 (74.07%), Query Frame = 3 
Query:    6 ENERLAAWANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTF 329
            ++ R A   N   A+LL I++ P AN+I+ VD I+A LP + + +PA +D+ +  DR+ TIRAS+++V+  L+I++ALV++V FLFLR   ATIIP+++VP+SL+GTF
Sbjct:  267 QDVRNAGMTNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVALVILVVFLFLRSGRATIIPAVSVPVSLIGTF 374
[Close]
BLAST of EY735911 vs. ExPASy Swiss-Prot
Match: MDTC_ECOBW (Multidrug resistance protein mdtC OS=Escherichia coli (strain K12 / BW2952) GN=mdtC PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.739e-24
Identity = 51/108 (47.22%), Postives = 80/108 (74.07%), Query Frame = 3 
Query:    6 ENERLAAWANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTF 329
            ++ R A   N   A+LL I++ P AN+I+ VD I+A LP + + +PA +D+ +  DR+ TIRAS+++V+  L+I++ALV++V FLFLR   ATIIP+++VP+SL+GTF
Sbjct:  267 QDVRNAGMTNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVALVILVVFLFLRSGRATIIPAVSVPVSLIGTF 374
[Close]
BLAST of EY735911 vs. ExPASy Swiss-Prot
Match: MDTC_ECO81 (Multidrug resistance protein mdtC OS=Escherichia coli O81 (strain ED1a) GN=mdtC PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.739e-24
Identity = 52/108 (48.15%), Postives = 79/108 (73.15%), Query Frame = 3 
Query:    6 ENERLAAWANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTF 329
            ++ R A   N   A+LL I++ P AN+I+ VD I+A LP +   +PA +D+ +  DR+ TIRAS+++V+  L+I++ALV++V FLFLR   ATIIP++AVP+SL+GTF
Sbjct:  267 QDVRNAGMTNAKPAILLMIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEVEQTLVISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTF 374
The following BLAST results are available for this feature:
BLAST of EY735911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
MDTC_ECO275.926e-2448.15Multidrug resistance protein mdtC OS=Escherichia c... [more]
MDTC_SHISS7.739e-2447.22Multidrug resistance protein mdtC OS=Shigella sonn... [more]
MDTC_PHOLL7.739e-2450.00Multidrug resistance protein mdtC OS=Photorhabdus ... [more]
MDTC_PECCP7.739e-2450.00Multidrug resistance protein mdtC OS=Pectobacteriu... [more]
MDTC_ECOLI7.739e-2447.22Multidrug resistance protein mdtC OS=Escherichia c... [more]
MDTC_ECOLC7.739e-2447.22Multidrug resistance protein mdtC OS=Escherichia c... [more]
MDTC_ECOHS7.739e-2447.22Multidrug resistance protein mdtC OS=Escherichia c... [more]
MDTC_ECODH7.739e-2447.22Multidrug resistance protein mdtC OS=Escherichia c... [more]
MDTC_ECOBW7.739e-2447.22Multidrug resistance protein mdtC OS=Escherichia c... [more]
MDTC_ECO817.739e-2448.15Multidrug resistance protein mdtC OS=Escherichia c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-007-F05-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735911 ID=EY735911; Name=EY735911; organism=Citrus sinensis; type=EST; length=333bp
GAGCCGAGAACGAACGCCTCGCGGCCTGGGCCAATGAAAACCAGGCGGTC
TTGCTGAACATTCAGCGCCAGCCCGGGGCCAACGTCATCGAAGTGGTGGA
CCGGATCAAGGCATTGTTGCCGAGCATCACCGACAACCTGCCGGCCGGCC
TGGACGTGACGGTGCTCACTGACCGGACCCAGACCATCCGGGCCTCGGTC
AAGGACGTACAACACGAATTGCTGATCGCCATTGCCCTGGTGGTGATGGT
GACGTTCCTGTTCCTGCGCCGCTTCAGCGCGACCATCATCCCGTCCATTG
CCGTGCCACTGTCCCTGGTGGGCACCTTTGGCG
back to top