EY735836

Overview
NameEY735836
Unique NameEY735836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735836 vs. ExPASy Swiss-Prot
Match: PWP2_NEUCR (Periodic tryptophan protein 2 homolog OS=Neurospora crassa GN=B18D24.40 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.927e-11
Identity = 49/179 (27.37%), Postives = 84/179 (46.93%), Query Frame = 2
Query:   83 NYDCKHTLKDHTAEVQAVTVHATNKY--FVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA---VASADIRVYQVAT 601
            +++  HTL     E+  VT++ + ++  F  + L     +   S    L Q       G  +   S  + PDG  + T   +  +K+WD +S   +  F  H   +TA  FS+ G  L T++ DG ++ WDL + +NFR+F ++      + +  D SG  +A   V S DI ++ V T
Sbjct:  285 DFNMIHTLSISQNEIDFVTINKSGEWLAFGASKLGQLLVWEWQSESYILKQ------QGHFDSMNSLVYSPDGQRIVTVADDGKIKVWDTESGFCIVTFTEHTSGITACEFSKKGNVLFTSSLDGSIRAWDLIRYRNFRTF-TAPERLSFSCMAVDPSGEIVAAGSVDSFDIHIWSVQT 456          
BLAST of EY735836 vs. ExPASy Swiss-Prot
Match: TAF5_SCHPO (Transcription initiation factor TFIID subunit 5 OS=Schizosaccharomyces pombe GN=taf5 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.047e-11
Identity = 61/219 (27.85%), Postives = 94/219 (42.92%), Query Frame = 2
Query:    8 SAEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL---KDHTAEVQAVTVHATNKYFVTASLDNT---W-CFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDL---RKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVATVTADWNCIKT 631
            S +    L+ S D + R+W      + D K  L   K HT  V  V       YF TAS D T   W C +     +    +SD              FHP+   + TG+S+   ++WDV    +V  F+GH   VTA++ + +G+ +A+A  +G + LWD+   R++K  R    +       S+ F    + L    +D       TV A W+  KT
Sbjct:  388 SPDNKYLLSCSEDASARLW------SVDTKTALVAYKGHTGPVWDVAFGPFGHYFATASHDQTAQLWSCDHIYPLRVFAGHLSDVDC---------VTFHPNSAYVLTGSSDKTCRLWDVHRGHSVRVFNGHTQPVTAVAIAPDGHTMASADSEGLIHLWDIGTGRRIKTMRGHRGN-----IYSLSFSRESTVLVSGGSD------CTVRA-WDVFKT 579          
The following BLAST results are available for this feature:
BLAST of EY735836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
PWP2_NEUCR6.927e-1127.37Periodic tryptophan protein 2 homolog OS=Neurospor... [more]
TAF5_SCHPO9.047e-1127.85Transcription initiation factor TFIID subunit 5 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-005-F12-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735836 ID=EY735836; Name=EY735836; organism=Citrus sinensis; type=EST; length=860bp
CCACGCGTCCGCAGAAGGTGATCTATTCTTAACAGGCTCGGCTGATAAGA
CTGTTCGTGTGTGGCAAGGATCTGAAGATGGAAATTATGATTGTAAGCAC
ACTTTGAAGGATCATACTGCTGAGGTGCAAGCTGTCACGGTCCATGCCAC
GAACAAATACTTTGTGACTGCTTCTCTGGATAATACATGGTGCTTTTACG
ATCTTTCTTCTGGTATATGCCTGACACAGGTTTCAGATGCTGGAACCGAC
GGTAGACCTGAAGGTTATACATCTGCAGCTTTTCATCCTGATGGTCTCAT
CCTTGGAACGGGCACCTCAGAAGCTCTTGTTAAGATTTGGGATGTGAAAA
GTCAGGCAAATGTGGCGAAATTTGATGGACATGTTGGAGCAGTTACAGCC
ATATCCTTTTCAGAAAATGGTTACTACCTTGCGACGGCAGCCCATGATGG
TGTGAAGCTGTGGGACCTGCGTAAATTGAAGAACTTCCGGTCATTTGAAT
CTTCTGATTCTGAGACACCTACCAACTCAGTGGATTTCGACCATAGTGGA
TCTTACCTCGCAGTTGCAAGTGCAGATATAAGAGTCTACCAAGTGGCCAC
TGTTACAGCTGATTGGAATTGTATCAAAACTTTTCCTGATTTATCAGGCA
CAGGTAAGGCAACTTGTGTGAAATTTGGGCCCCCATCGCTACTACCTTGC
TGTGGGATCAATGGACCGCCACCTACTGGTATTTGGTCTGCCCTGGCAAG
TATGCCCCGTCAAAACCGAACACAATCCTACACCGCACCCCCTTGAGACG
TTGGGCCCCCGCCCCTTGCAGCCTCCCATCCTCTTCCCCCCCCCCTGCAA
CAAACCCGCC
back to top