EY735826

Overview
NameEY735826
Unique NameEY735826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 4.470e-22
Identity = 61/153 (39.87%), Postives = 87/153 (56.86%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILED--PSLLEQGSAVVKNQILKQKEVQESARGGNCC 464
            K +KL IWDTAGQERF T+TSSYYRGAHG ++VYDVT +E++ N+   W +E++ ++ +++  K+LVGNK D  +++ V        A      FLE SAKN  +V+Q F  +  +I +   P     G    +   LK         GG CC
Sbjct:   55 KTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQ-WLQEIDRHA-SENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQMGPGAASGG----ERPNLKIDSTPVKPAGGGCC 201          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB4A_DANRE (Ras-related protein Rab-4A OS=Danio rerio GN=rab4a PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.839e-22
Identity = 58/118 (49.15%), Postives = 79/118 (66.95%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKIL 365
            K +KL IWDTAGQERF ++T SYYRGA G +LVYD+T RET+  L++ W  +  + + +Q+ V IL GNK D D++R VT  E    AQE++ +FLE SA   E+V++ F     KIL
Sbjct:   55 KFVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKIL 170          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB3C_RAT (Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.959e-22
Identity = 55/114 (48.25%), Postives = 76/114 (66.67%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLL 353
            KR+KL IWDTAGQER+ T+T++YYRGA G IL+YD+T  E+F N    W+ +++ YS +   V IL GNK D + ER V+ E G  L ++    F E SAK+  +VKQ F+ L+
Sbjct:   77 KRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQV-ILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLV 188          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB3C_MOUSE (Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.959e-22
Identity = 55/114 (48.25%), Postives = 76/114 (66.67%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLL 353
            KR+KL IWDTAGQER+ T+T++YYRGA G IL+YD+T  E+F N    W+ +++ YS +   V IL GNK D + ER V+ E G  L ++    F E SAK+  +VKQ F+ L+
Sbjct:   77 KRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQV-ILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLV 188          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.301e-21
Identity = 63/158 (39.87%), Postives = 91/158 (57.59%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLL---YKILEDPSLL---EQGSAVVKNQILKQKEVQESARGGNCCS 467
            K +K  IWDTAGQER+  +TS+YYRGA G +LVYDVTR  TF N+   W KE+  + T+ + V +LVGNK D     AV  +EG   A+     F+E SA  + +V+  F ++L   Y+I+   S+    + GS   K + +  K+   + + G CCS
Sbjct:   61 KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVER-WLKELRDH-TDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVEAGDDAGSGPGKGEKINIKDDVSAVKKGGCCS 216          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.301e-21
Identity = 51/110 (46.36%), Postives = 77/110 (70.00%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCF 341
            KR+KL IWDTAGQERF T+T++YYRGA GI+LVYD+T  ++F N+ + W + +E ++ + D  K+++GNK D + +R V+RE+G  LA      F+E SAK   +++  F
Sbjct:   55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRN-WVRNIEEHA-SPDVEKMILGNKCDANDKRQVSREQGEKLAASFGIKFMETSAKANINIENAF 162          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB14_DICDI (Ras-related protein Rab-14 OS=Dictyostelium discoideum GN=rab14 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.301e-21
Identity = 53/110 (48.18%), Postives = 76/110 (69.09%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCF 341
            K++KL IWDTAGQERF  +T SYYRGA G +LVYD+TRR T+ +L++ W  +     TN + V +L+GNK D + +R VT EE    A+++  +F+E SAK  E+V++ F
Sbjct:   55 KKIKLQIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTT-WLTDAR-NLTNPNTVIMLIGNKKDLEGQRDVTYEEASAFAKQNGLIFVESSAKTGENVEEAF 162          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.699e-21
Identity = 51/121 (42.15%), Postives = 87/121 (71.90%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCF----KDLLYKI 362
            K++KL IWDTAGQERF T+T++YYRGA GI+ VYD+T  ++F N+ + W + +E ++++ D  ++++GNK D + +R V++E G  LA ++   FLE SAK++ +V++ F    +D++ K+
Sbjct:   55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKN-WIRNIEEHASS-DVERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSAKSSINVEEAFITLARDIMTKL 173          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB12_RAT (Ras-related protein Rab-12 (Fragment) OS=Rattus norvegicus GN=Rab12 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.699e-21
Identity = 55/122 (45.08%), Postives = 86/122 (70.49%), Query Frame = 3
Query:    6 RPKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFL-ECSAKNTEHVKQCFKDLLYKILE 368
            R K+++L IWDTAGQERF ++TS+YYR A GIILVYD+T++ETF +L   W K ++ Y+ ++D   +L GNK+D +++R ++R++G   AQ+   + L E SAK+  +V + F  L+  IL+
Sbjct:   40 RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYA-SEDAELLLAGNKLDCETDREISRQQGEKFAQQITGMRLSEPSAKDNFNVDEIFLKLVDDILK 159          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.219e-21
Identity = 52/113 (46.02%), Postives = 79/113 (69.91%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDL 350
            KR+KL IWDTAGQERF T+T++YYRGA GI+LVYD+T  ++F N+ + W + +E ++ + D  K+++GNK D + +R V++E G  LA ++   F+E SAK   +V+  F  L
Sbjct:   55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFYTL 165          
The following BLAST results are available for this feature:
BLAST of EY735826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 432
Match NameE-valueIdentityDescription
RAB1C_HUMAN4.470e-2239.87Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
RAB4A_DANRE5.839e-2249.15Ras-related protein Rab-4A OS=Danio rerio GN=rab4a... [more]
RAB3C_RAT9.959e-2248.25Ras-related protein Rab-3C OS=Rattus norvegicus GN... [more]
RAB3C_MOUSE9.959e-2248.25Ras-related protein Rab-3C OS=Mus musculus GN=Rab3... [more]
RIC2_ORYSJ1.301e-2139.87Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RAB8A_CHICK1.301e-2146.36Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RAB14_DICDI1.301e-2148.18Ras-related protein Rab-14 OS=Dictyostelium discoi... [more]
RAB8_DISOM1.699e-2142.15Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RAB12_RAT1.699e-2145.08Ras-related protein Rab-12 (Fragment) OS=Rattus no... [more]
RAB8A_BOVIN2.219e-2146.02Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-005-E10-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735826 ID=EY735826; Name=EY735826; organism=Citrus sinensis; type=EST; length=791bp
CCACGCGTCCGAAAAGACTGAAGCTGACAATTTGGGACACAGCTGGACAG
GAGAGATTTGGGACATTGACGAGCTCTTACTATAGAGGTGCACATGGAAT
TATCCTTGTTTATGACGTGACACGACGAGAAACCTTTACCAACTTGTCAA
GTGTATGGGCAAAGGAAGTAGAGCTTTACTCTACCAATCAAGATTGTGTC
AAAATTTTAGTGGGAAATAAAGTTGACAGGGATAGTGAAAGGGCTGTTAC
CAGAGAGGAGGGGATGATTCTTGCACAGGAGCATAAATGTTTGTTTCTTG
AATGTAGTGCTAAAAATACAGAACACGTGAAGCAGTGCTTTAAAGATCTC
TTATATAAGATTCTTGAGGATCCCAGTTTATTAGAACAAGGATCTGCAGT
GGTGAAGAATCAAATTTTGAAACAGAAAGAAGTCCAGGAATCGGCTCGTG
GTGGTAATTGCTGCTCTTAATTGATGCCCCCAACAAAGTGATTCAGCACA
AACATACTACCCGATAAATCAAAATGGAAGTCCAGAAACTATCAGCACAA
TTGGATGCGGGTGCTTAGATGGTTGAACACGATCCAGAATCGCATACATT
ACATGTATGGTCGAACATGCTCCAGAACCGGATCAAGGAAATGGGTGTTC
ATCGTAGAGTTTCGCGGGAGCGTGCGAGTAGCCGGAATCGTAGGGTGGAA
ACCGCGAGGGGCGGGTGCGCGTGGCATAAGGCGGTCATCTTGGCCCCATC
CTCAGCGGCATCGCGGCCGTGAGCCACTACATCCCCCTGCG
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