EY735826

Overview
NameEY735826
Unique NameEY735826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.657e-24
Identity = 61/134 (45.52%), Postives = 90/134 (67.16%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILEDPSLLEQGSAVVKNQ 413
            K++KL IWDTAGQE F ++T SYYRGA G +LVYD+TRRETF +L+S W ++   +S++ + V +L+GNK D +S R V REEG   A+EH  +F+E SAK   +V++ + +   +I      ++QG   V N+
Sbjct:   53 KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTS-WLEDARQHSSS-NMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYRK---IQQGLFDVHNE 181          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 3.657e-24
Identity = 67/153 (43.79%), Postives = 93/153 (60.78%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILE--DPSLLEQGSAVVKNQILKQKEVQESARGGNCC 464
            K +KL IWDTAGQERF T+TSSYYRGAHGII+VYDVT +E+F N+   W +E++ Y+ +++  K+LVGNK D  +++ V        A      FLE SAKN  +V+Q F  +  +I +   P     G A   N  ++   V++S  GG CC
Sbjct:   58 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPG-ATAGGAEKSNVKIQSTPVKQS--GGGCC 205          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 3.657e-24
Identity = 67/153 (43.79%), Postives = 93/153 (60.78%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILE--DPSLLEQGSAVVKNQILKQKEVQESARGGNCC 464
            K +KL IWDTAGQERF T+TSSYYRGAHGII+VYDVT +E+F N+   W +E++ Y+ +++  K+LVGNK D  +++ V        A      FLE SAKN  +V+Q F  +  +I +   P     G A   N  ++   V++S  GG CC
Sbjct:   58 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPG-ATAGGAEKSNVKIQSTPVKQS--GGGCC 205          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 3.657e-24
Identity = 67/153 (43.79%), Postives = 93/153 (60.78%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILE--DPSLLEQGSAVVKNQILKQKEVQESARGGNCC 464
            K +KL IWDTAGQERF T+TSSYYRGAHGII+VYDVT +E+F N+   W +E++ Y+ +++  K+LVGNK D  +++ V        A      FLE SAKN  +V+Q F  +  +I +   P     G A   N  ++   V++S  GG CC
Sbjct:   58 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPG-ATAGGAEKSNVKIQSTPVKQS--GGGCC 205          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 3.657e-24
Identity = 67/153 (43.79%), Postives = 93/153 (60.78%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILE--DPSLLEQGSAVVKNQILKQKEVQESARGGNCC 464
            K +KL IWDTAGQERF T+TSSYYRGAHGII+VYDVT +E+F N+   W +E++ Y+ +++  K+LVGNK D  +++ V        A      FLE SAKN  +V+Q F  +  +I +   P     G A   N  ++   V++S  GG CC
Sbjct:   58 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPG-ATAGGAEKSNVKIQSTPVKQS--GGGCC 205          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.776e-24
Identity = 67/153 (43.79%), Postives = 92/153 (60.13%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILE--DPSLLEQGSAVVKNQILKQKEVQESARGGNCC 464
            K +KL IWDTAGQERF T+TSSYYRGAHGII+VYDVT +E+F N+   W +E++ Y+ +++  K+LVGNK D  +++ V        A      FLE SAKN  +V+Q F  +  +I +   P     GS    N  ++   V+ S  GG CC
Sbjct:   55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSGGSE-KSNVNIQSTPVKSS--GGGCC 202          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 6.238e-24
Identity = 65/155 (41.94%), Postives = 88/155 (56.77%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILEDPSLLEQGSAVVKNQILKQKE---VQESARGGNCCS 467
            K +KL IWDTAGQERF T+TSSYYRGAHGII+VYD+T  E+F N+   W  E++ Y+ N    K+LVGNK D    RAV        AQE    FLE SAK + +V++ F  +   I +  +  +       + +++ K     QE  +   CCS
Sbjct:   55 KTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQ-WLDEIDRYA-NDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAALERKPSNVVQMKGRPIQQEQQKSSRCCS 207          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.238e-24
Identity = 57/128 (44.53%), Postives = 85/128 (66.41%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILEDPSLLEQGS 395
            K++KL IWDTAGQERF T+T+SYYRGA GI+LVYD+T  ++F N+S  W + ++ ++ N+D  ++L+GNK D D +R V + +G  +A+EH   F E SAK   ++++ F  L   IL    + E  S
Sbjct:   56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISK-WLRNIDEHA-NEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNS 181          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.238e-24
Identity = 57/128 (44.53%), Postives = 85/128 (66.41%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILEDPSLLEQGS 395
            K++KL IWDTAGQERF T+T+SYYRGA GI+LVYD+T  ++F N+S  W + ++ ++ N+D  ++L+GNK D D +R V + +G  +A+EH   F E SAK   ++++ F  L   IL    + E  S
Sbjct:   56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISK-WLRNIDEHA-NEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNS 181          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.238e-24
Identity = 57/128 (44.53%), Postives = 85/128 (66.41%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILEDPSLLEQGS 395
            K++KL IWDTAGQERF T+T+SYYRGA GI+LVYD+T  ++F N+S  W + ++ ++ N+D  ++L+GNK D D +R V + +G  +A+EH   F E SAK   ++++ F  L   IL    + E  S
Sbjct:   56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISK-WLRNIDEHA-NEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNS 181          
The following BLAST results are available for this feature:
BLAST of EY735826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 432
Match NameE-valueIdentityDescription
RAB2B_MOUSE3.657e-2445.52Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB1A_RAT3.657e-2443.79Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_MOUSE3.657e-2443.79Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN3.657e-2443.79Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA3.657e-2443.79Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
RAB1_DISOM4.776e-2443.79Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
YPTM1_MAIZE6.238e-2441.94GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RAB10_PONAB6.238e-2444.53Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE6.238e-2444.53Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN6.238e-2444.53Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-005-E10-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735826 ID=EY735826; Name=EY735826; organism=Citrus sinensis; type=EST; length=791bp
CCACGCGTCCGAAAAGACTGAAGCTGACAATTTGGGACACAGCTGGACAG
GAGAGATTTGGGACATTGACGAGCTCTTACTATAGAGGTGCACATGGAAT
TATCCTTGTTTATGACGTGACACGACGAGAAACCTTTACCAACTTGTCAA
GTGTATGGGCAAAGGAAGTAGAGCTTTACTCTACCAATCAAGATTGTGTC
AAAATTTTAGTGGGAAATAAAGTTGACAGGGATAGTGAAAGGGCTGTTAC
CAGAGAGGAGGGGATGATTCTTGCACAGGAGCATAAATGTTTGTTTCTTG
AATGTAGTGCTAAAAATACAGAACACGTGAAGCAGTGCTTTAAAGATCTC
TTATATAAGATTCTTGAGGATCCCAGTTTATTAGAACAAGGATCTGCAGT
GGTGAAGAATCAAATTTTGAAACAGAAAGAAGTCCAGGAATCGGCTCGTG
GTGGTAATTGCTGCTCTTAATTGATGCCCCCAACAAAGTGATTCAGCACA
AACATACTACCCGATAAATCAAAATGGAAGTCCAGAAACTATCAGCACAA
TTGGATGCGGGTGCTTAGATGGTTGAACACGATCCAGAATCGCATACATT
ACATGTATGGTCGAACATGCTCCAGAACCGGATCAAGGAAATGGGTGTTC
ATCGTAGAGTTTCGCGGGAGCGTGCGAGTAGCCGGAATCGTAGGGTGGAA
ACCGCGAGGGGCGGGTGCGCGTGGCATAAGGCGGTCATCTTGGCCCCATC
CTCAGCGGCATCGCGGCCGTGAGCCACTACATCCCCCTGCG
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