EY735826

Overview
NameEY735826
Unique NameEY735826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.370e-23
Identity = 57/126 (45.24%), Postives = 86/126 (68.25%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCF----KDLLYKILEDPS 377
            KR+KL IWDTAGQERF T+T++YYRGA GI+LVYDVT  ++F N+ + W + +E ++T+    K+L+GNK D   ++ V    G  LA E+   FLE SAKN+ +V++ F    KD+  ++++ P+
Sbjct:   62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRN-WIRNIEQHATD-SVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTPN 185          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB3B_HUMAN (Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3B PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.370e-23
Identity = 62/132 (46.97%), Postives = 84/132 (63.64%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILE--------DPSLL 383
            KR+KL IWDTAGQER+ T+T++YYRGA G IL+YD+T  E+F N    WA +++ YS +   V ILVGNK D + ER V  E+G +LA++    F E SAK    V+Q F+ L+  I +        DPS+L
Sbjct:   69 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQV-ILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSLDTDPSML 198          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.370e-23
Identity = 55/110 (50.00%), Postives = 76/110 (69.09%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCF 341
            K +KL IWDTAGQERF T+TSSYYRGA GIILVYD T +++FTN+   W  E++ Y+  ++  K+LVGNK D  +E+ V   +    A+ +   F+E SAKN  +V++CF
Sbjct:   57 KTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQ-WMGEIDRYAC-ENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECF 164          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 2.370e-23
Identity = 66/153 (43.14%), Postives = 92/153 (60.13%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILE--DPSLLEQGSAVVKNQILKQKEVQESARGGNCC 464
            K +KL IWDTAGQERF T+TSSYYRGAHGII+VYDVT + +F N+   W +E++ Y+ +++  K+LVGNK D  +++ V        A      FLE SAKN  +V+Q F  +  +I +   P     G A   N  ++   V++S  GG CC
Sbjct:   58 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQ-WLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPG-ATAGGAEKSNVKIQSTPVKQS--GGGCC 205          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.370e-23
Identity = 61/160 (38.12%), Postives = 96/160 (60.00%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILEDPSLLEQGSAVVKNQILKQK--------EVQESARGGNCCS 467
            K +K  IWDTAGQERF  +TS+YYRGA G ++VYD+TRR TF ++   W  E++++S +    ++LVGNK D ++ RAV+ EEG  LA+E    F+E SA ++ +VK  F+ ++  I  + S  +  S   K+++   +           + + G +CCS
Sbjct:   59 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGR-WLDELKIHS-DTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVSRKQLNSDTYKDELTVNRVSLVKDDNSASKQSSGFSCCS 216          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.096e-23
Identity = 58/117 (49.57%), Postives = 78/117 (66.67%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKI 362
            K +KL IWDTAGQERF T+TSSYYRGAHGII+VYDVT +E+F N+   W  E++ Y+ +++  K+LVGNK D   ++ V  +     A E    FLE SAKN  +V+Q F  +  +I
Sbjct:   55 KVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLAEIDRYA-SENVNKLLVGNKSDLTGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEI 169          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.096e-23
Identity = 64/153 (41.83%), Postives = 88/153 (57.52%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILE--DPSLLEQGSAVVKNQILKQKEVQESARGGNCC 464
            K +KL IWDTAGQERF T+TSSYYRGAHGII+VYDVT +E++ N+   W +E++ Y+ +++  K+LVGNK D  +++ V        A      FLE SAKN  +V+Q F  +  +I +   P     G    +   LK         GG CC
Sbjct:   55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYA-SENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGG----ERPNLKIDSTPVKPAGGGCC 201          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.096e-23
Identity = 64/153 (41.83%), Postives = 88/153 (57.52%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILE--DPSLLEQGSAVVKNQILKQKEVQESARGGNCC 464
            K +KL IWDTAGQERF T+TSSYYRGAHGII+VYDVT +E++ N+   W +E++ Y+ +++  K+LVGNK D  +++ V        A      FLE SAKN  +V+Q F  +  +I +   P     G    +   LK         GG CC
Sbjct:   55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYA-SENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGG----ERPNLKIDSTPVKPAGGGCC 201          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.096e-23
Identity = 64/153 (41.83%), Postives = 88/153 (57.52%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILE--DPSLLEQGSAVVKNQILKQKEVQESARGGNCC 464
            K +KL IWDTAGQERF T+TSSYYRGAHGII+VYDVT +E++ N+   W +E++ Y+ +++  K+LVGNK D  +++ V        A      FLE SAKN  +V+Q F  +  +I +   P     G    +   LK         GG CC
Sbjct:   55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYA-SENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGG----ERPNLKIDSTPVKQAGGGCC 201          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB12_HUMAN (Putative Ras-related protein Rab-12 OS=Homo sapiens GN=RAB12 PE=5 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 3.096e-23
Identity = 57/122 (46.72%), Postives = 87/122 (71.31%), Query Frame = 3
Query:    6 RPKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCL-FLECSAKNTEHVKQCFKDLLYKILE 368
            R K+++L IWDTAGQERF ++TS+YYR A GIILVYD+T++ETF +L   W K ++ Y+ ++D   +LVGNK+D +++R +TR++G   AQ+   + F E SAK+  +V + F  L+  IL+
Sbjct:   87 RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYA-SEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 206          
The following BLAST results are available for this feature:
BLAST of EY735826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 432
Match NameE-valueIdentityDescription
RAB8A_DICDI2.370e-2345.24Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB3B_HUMAN2.370e-2346.97Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3... [more]
RAB1D_DICDI2.370e-2350.00Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RAB1A_PIG2.370e-2343.14Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
ARA1_ARATH2.370e-2338.13Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
YPTV1_VOLCA3.096e-2349.57GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
RAB1B_PONAB3.096e-2341.83Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1... [more]
RAB1B_HUMAN3.096e-2341.83Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
RAB1B_BOVIN3.096e-2341.83Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]
RAB12_HUMAN3.096e-2346.72Putative Ras-related protein Rab-12 OS=Homo sapien... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-005-E10-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735826 ID=EY735826; Name=EY735826; organism=Citrus sinensis; type=EST; length=791bp
CCACGCGTCCGAAAAGACTGAAGCTGACAATTTGGGACACAGCTGGACAG
GAGAGATTTGGGACATTGACGAGCTCTTACTATAGAGGTGCACATGGAAT
TATCCTTGTTTATGACGTGACACGACGAGAAACCTTTACCAACTTGTCAA
GTGTATGGGCAAAGGAAGTAGAGCTTTACTCTACCAATCAAGATTGTGTC
AAAATTTTAGTGGGAAATAAAGTTGACAGGGATAGTGAAAGGGCTGTTAC
CAGAGAGGAGGGGATGATTCTTGCACAGGAGCATAAATGTTTGTTTCTTG
AATGTAGTGCTAAAAATACAGAACACGTGAAGCAGTGCTTTAAAGATCTC
TTATATAAGATTCTTGAGGATCCCAGTTTATTAGAACAAGGATCTGCAGT
GGTGAAGAATCAAATTTTGAAACAGAAAGAAGTCCAGGAATCGGCTCGTG
GTGGTAATTGCTGCTCTTAATTGATGCCCCCAACAAAGTGATTCAGCACA
AACATACTACCCGATAAATCAAAATGGAAGTCCAGAAACTATCAGCACAA
TTGGATGCGGGTGCTTAGATGGTTGAACACGATCCAGAATCGCATACATT
ACATGTATGGTCGAACATGCTCCAGAACCGGATCAAGGAAATGGGTGTTC
ATCGTAGAGTTTCGCGGGAGCGTGCGAGTAGCCGGAATCGTAGGGTGGAA
ACCGCGAGGGGCGGGTGCGCGTGGCATAAGGCGGTCATCTTGGCCCCATC
CTCAGCGGCATCGCGGCCGTGAGCCACTACATCCCCCTGCG
back to top