EY735826

Overview
NameEY735826
Unique NameEY735826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.096e-23
Identity = 56/128 (43.75%), Postives = 85/128 (66.41%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILEDPSLLEQGS 395
            K++KL IWDTAGQERF T+T+SYYRGA GI+LVYD+T  ++F N+S  W + ++ ++ N+D  ++L+ NK D D +R V + +G  +A+EH+  F E SAK   ++++ F  L   IL    + E  S
Sbjct:   56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISK-WLRNIDQHA-NEDVERMLLRNKCDMDHKRVVPKGKGEQIAREHRIRFFETSAKANINIEKAFLTLPEDILRKTPVKEPNS 181          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB3B_MOUSE (Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.043e-23
Identity = 62/132 (46.97%), Postives = 84/132 (63.64%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILE--------DPSLL 383
            KR+KL IWDTAGQER+ T+T++YYRGA G IL+YD+T  E+F N    WA +++ YS +   V ILVGNK D + ER V  E+G +LA++    F E SAK    V+Q F+ L+  I +        DPS+L
Sbjct:   69 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQV-ILVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSMDTDPSVL 198          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB3B_MESAU (Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.043e-23
Identity = 62/132 (46.97%), Postives = 84/132 (63.64%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILE--------DPSLL 383
            KR+KL IWDTAGQER+ T+T++YYRGA G IL+YD+T  E+F N    WA +++ YS +   V ILVGNK D + ER V  E+G +LA++    F E SAK    V+Q F+ L+  I +        DPS+L
Sbjct:   69 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQV-ILVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSLDTDPSVL 198          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.043e-23
Identity = 61/150 (40.67%), Postives = 89/150 (59.33%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILEDPSLLEQGSAVVKNQILKQKEVQESARGGNC 461
            K +KL IWDTAGQERF T+TSSYYRGAHGII+VYDVT + TF N+   W +E++ ++  ++  K+LVGNK D  +++ V        A   +  FLE SAK + +V+Q F  +  +I    +  +    V KN+++       S + G C
Sbjct:   55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQ-WLQEIDRFAC-ENVNKLLVGNKSDLVAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEIKNRLTASQPTQTVDKNKVVPGSSAPISPKSGCC 202          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.043e-23
Identity = 63/157 (40.13%), Postives = 92/157 (58.60%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILEDPSLLEQGSAVVK-----NQILKQKEVQESARGGNCCS 467
            K +K  IWDTAGQERF  +TS+YYRGA G ++VYD+TR  TF N+   W  E+  +S +    K+L+GNK D +S RAV+ EEG  LA+     F+E SA ++ +VK  F+ ++ +I  + S  +  S   K     N++   K   E  +  +CCS
Sbjct:   59 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGR-WLDELNTHS-DTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQLNSDSYKEELTVNRVSLVKNENEGTKTFSCCS 213          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB3B_RAT (Ras-related protein Rab-3B OS=Rattus norvegicus GN=Rab3b PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.281e-23
Identity = 61/132 (46.21%), Postives = 84/132 (63.64%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILE--------DPSLL 383
            KR+KL IWDTAGQER+ T+T++YYRGA G IL+YD+T  E+F N    WA +++ YS +   V ILVGNK D + ER +  E+G +LA++    F E SAK    V+Q F+ L+  I +        DPS+L
Sbjct:   69 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQV-ILVGNKCDMEEERVIPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSMDTDPSVL 198          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB12_CANFA (Ras-related protein Rab-12 (Fragment) OS=Canis familiaris GN=RAB12 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.281e-23
Identity = 57/122 (46.72%), Postives = 86/122 (70.49%), Query Frame = 3
Query:    6 RPKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCL-FLECSAKNTEHVKQCFKDLLYKILE 368
            R K+++L IWDTAGQERF ++TS+YYR A GIILVYD+T++ETF +L   W K ++ Y+ ++D   +LVGNK+D +++R +TR++G   A E   + F E SAK+  +V + F  L+  IL+
Sbjct:   51 RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYA-SEDAELLLVGNKLDCETDREITRQQGEKFAHEITGMRFCEASAKDNFNVDEIFLKLVDDILK 170          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.897e-23
Identity = 57/117 (48.72%), Postives = 81/117 (69.23%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKI 362
            KR+KL IWDTAGQERF T+T++YYRGA GI+L+YDVT +++F N+ + W   VE ++ +++  KIL+GNK D + +R V+ E+G  LA E    FLE SAK   +V + F  L  +I
Sbjct:   56 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRT-WFSNVEQHA-SENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREI 170          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.897e-23
Identity = 61/151 (40.40%), Postives = 87/151 (57.62%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILEDPSLLEQGSAVVKNQILKQKEVQESARGGNCC 464
            K +KL IWDTAGQERF T+TSSYYRGAHGII+VYDVT +++F N+   W +E++ Y+  +   ++LVGNK D   ++ V        A      FLE SAK++ +V+Q F  +  +I E        S+  K+ +   +    S    NCC
Sbjct:   55 KTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQ-WLQEIDRYAV-EGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAKSSVKVGQGTNVSQSSSNCC 203          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: SEC4_CANGA (Ras-related protein SEC4 OS=Candida glabrata GN=SEC4 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.897e-23
Identity = 68/153 (44.44%), Postives = 92/153 (60.13%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILE--DPSLLEQGSAVVKNQILKQKEVQESARGGNCC 464
            K++KL +WDTAGQERF T+T++YYRGA GIILVYDVT   TF N+   W K V  ++ N +   +LVGNK D D+ R VT E+G  LA+E    F+E SAKN ++V + F  L   I E  D + L   ++     I       +S++  NCC
Sbjct:   67 KKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQ-WFKTVNEHA-NDEAQLLLVGNKSDMDT-RVVTYEQGEALAKELGLPFIESSAKNDDNVNEIFFTLARLIQEKIDSNKLSGPNSGKDGNISINANKGDSSK-SNCC 215          
The following BLAST results are available for this feature:
BLAST of EY735826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 432
Match NameE-valueIdentityDescription
RAB10_RAT3.096e-2343.75Ras-related protein Rab-10 OS=Rattus norvegicus GN... [more]
RAB3B_MOUSE4.043e-2346.97Ras-related protein Rab-3B OS=Mus musculus GN=Rab3... [more]
RAB3B_MESAU4.043e-2346.97Ras-related protein Rab-3B OS=Mesocricetus auratus... [more]
RAB1A_DICDI4.043e-2340.67Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
ARA4_ARATH4.043e-2340.13Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
RAB3B_RAT5.281e-2346.21Ras-related protein Rab-3B OS=Rattus norvegicus GN... [more]
RAB12_CANFA5.281e-2346.72Ras-related protein Rab-12 (Fragment) OS=Canis fam... [more]
YPT2_SCHPO6.897e-2348.72GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
YPT1_SCHPO6.897e-2340.40GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
SEC4_CANGA6.897e-2344.44Ras-related protein SEC4 OS=Candida glabrata GN=SE... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-005-E10-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735826 ID=EY735826; Name=EY735826; organism=Citrus sinensis; type=EST; length=791bp
CCACGCGTCCGAAAAGACTGAAGCTGACAATTTGGGACACAGCTGGACAG
GAGAGATTTGGGACATTGACGAGCTCTTACTATAGAGGTGCACATGGAAT
TATCCTTGTTTATGACGTGACACGACGAGAAACCTTTACCAACTTGTCAA
GTGTATGGGCAAAGGAAGTAGAGCTTTACTCTACCAATCAAGATTGTGTC
AAAATTTTAGTGGGAAATAAAGTTGACAGGGATAGTGAAAGGGCTGTTAC
CAGAGAGGAGGGGATGATTCTTGCACAGGAGCATAAATGTTTGTTTCTTG
AATGTAGTGCTAAAAATACAGAACACGTGAAGCAGTGCTTTAAAGATCTC
TTATATAAGATTCTTGAGGATCCCAGTTTATTAGAACAAGGATCTGCAGT
GGTGAAGAATCAAATTTTGAAACAGAAAGAAGTCCAGGAATCGGCTCGTG
GTGGTAATTGCTGCTCTTAATTGATGCCCCCAACAAAGTGATTCAGCACA
AACATACTACCCGATAAATCAAAATGGAAGTCCAGAAACTATCAGCACAA
TTGGATGCGGGTGCTTAGATGGTTGAACACGATCCAGAATCGCATACATT
ACATGTATGGTCGAACATGCTCCAGAACCGGATCAAGGAAATGGGTGTTC
ATCGTAGAGTTTCGCGGGAGCGTGCGAGTAGCCGGAATCGTAGGGTGGAA
ACCGCGAGGGGCGGGTGCGCGTGGCATAAGGCGGTCATCTTGGCCCCATC
CTCAGCGGCATCGCGGCCGTGAGCCACTACATCCCCCTGCG
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