EY735826

Overview
NameEY735826
Unique NameEY735826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.176e-22
Identity = 57/133 (42.86%), Postives = 87/133 (65.41%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILEDPSLLEQGSAVVKN 410
            K++KL +WDTAGQERF T+T++YYRGA GIILVYD+T  ++F N+ + W K ++  + +    ++L+GNK D +++R V +E+   LA+EH   F E SAK++ +V + F  L   I     LL+ G   +KN
Sbjct:   55 KKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQN-WMKSIK-ENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI-----LLKSGGRRLKN 180          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.176e-22
Identity = 63/156 (40.38%), Postives = 96/156 (61.54%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD-SERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCF----KDLLYKILEDPSLLEQGSAVVKNQILKQKEVQESARGGNCC 464
            KR+KL IWDTAGQERF T+T++YYRGA GI+LVYDVT   +F N+ + W + +E ++++ +  KILVGNK D D S+RAV   +G  LA E+   F E SAK   +V++ F    +D+  ++ +  S  E  +  + +Q  +     ++ +   CC
Sbjct:   62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASD-NVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEPATIKI-SQTDQAAGAGQATQKSACC 214          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.536e-22
Identity = 65/159 (40.88%), Postives = 94/159 (59.12%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD-RDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCF----KDLLYKI---LEDPSLLEQGSAVVKNQILKQKEVQESARGGNCC 464
            K +KL IWDTAGQERF T+TS+YYRGA GIILVYD+T   +F N+ + W + +E ++++ +  KILVGNK+D  + +R V+   G  LA E    F E SAK+  HV++ F    KD+L ++     +  LL+Q        +         A+G +CC
Sbjct:   60 KLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRN-WMRNIEQHASD-NVNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVAKDVLARMEGEHANQQLLQQQQLSAAQPVRLTSGSPSPAQGKSCC 216          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.536e-22
Identity = 55/126 (43.65%), Postives = 86/126 (68.25%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCF----KDLLYKILEDPS 377
            KR+KL IWDTAGQERF T+T++YYRGA GI+LVYDVT  ++F ++ + W + +E ++++    K+L+GNK D   ++ V    G  LA E+   FLE SAKN+ +V++ F    KD+  ++++ P+
Sbjct:   62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRN-WIRNIEQHASD-SVNKMLIGNKCDMTEKKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKRMIDTPN 185          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.536e-22
Identity = 56/117 (47.86%), Postives = 78/117 (66.67%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKI 362
            K +KL IWDTAGQERF T+TSSYYRGAHGII+VYDVT +E++ N+   W +E++ Y+ +++  K+LVGNK D  +++ V        A      FLE SAKN  +V+Q F  +  +I
Sbjct:   55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYA-SENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEI 169          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RABC_DICDI (Ras-related protein RabC OS=Dictyostelium discoideum GN=rabC PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.007e-22
Identity = 64/149 (42.95%), Postives = 92/149 (61.74%), Query Frame = 3
Query:   18 LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCFKDLLYKILEDPSLLEQGSAVVKNQILKQKEVQESARGGNCC 464
            +KL +WDTAGQERF ++T ++YRG+HG+I+VYDVT  ++F    + W +++  Y T    + ILVGNK D  ++R VT E+G  +A++ K  FLE SAK    V Q F DLL   ++D     + S V +NQ+    EV +  RG  CC
Sbjct:   57 VKLQLWDTAGQERFKSITQTFYRGSHGVIVVYDVTDPKSFERCKN-WVEDINQY-TQDGMIIILVGNKSDMVAQRKVTFEQGQEMAEQLKTKFLEVSAKENNGVTQVF-DLL---VQDIEATMKNSKVAQNQLNLNSEVGQK-RG--CC 196          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.007e-22
Identity = 52/121 (42.98%), Postives = 88/121 (72.73%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCF----KDLLYKI 362
            K++KL IWDTAGQERF T+T++YYRGA GI+LVYD+T  ++F N+ + W + +E ++++ D  ++++GNK D + +R V++E G  LA ++   FLE SAK++ +V++ F    +D++ K+
Sbjct:   55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN-WIRNIEEHASS-DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKL 173          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.007e-22
Identity = 52/121 (42.98%), Postives = 88/121 (72.73%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCF----KDLLYKI 362
            K++KL IWDTAGQERF T+T++YYRGA GI+LVYD+T  ++F N+ + W + +E ++++ D  ++++GNK D + +R V++E G  LA ++   FLE SAK++ +V++ F    +D++ K+
Sbjct:   55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN-WIRNIEEHASS-DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKL 173          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.007e-22
Identity = 52/121 (42.98%), Postives = 88/121 (72.73%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCF----KDLLYKI 362
            K++KL IWDTAGQERF T+T++YYRGA GI+LVYD+T  ++F N+ + W + +E ++++ D  ++++GNK D + +R V++E G  LA ++   FLE SAK++ +V++ F    +D++ K+
Sbjct:   55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN-WIRNIEEHASS-DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKL 173          
BLAST of EY735826 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.007e-22
Identity = 52/121 (42.98%), Postives = 88/121 (72.73%), Query Frame = 3
Query:   12 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEHVKQCF----KDLLYKI 362
            K++KL IWDTAGQERF T+T++YYRGA GI+LVYD+T  ++F N+ + W + +E ++++ D  ++++GNK D + +R V++E G  LA ++   FLE SAK++ +V++ F    +D++ K+
Sbjct:   55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN-WIRNIEEHASS-DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKL 173          
The following BLAST results are available for this feature:
BLAST of EY735826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 432
Match NameE-valueIdentityDescription
RAB13_BOVIN1.176e-2242.86Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
ARA3_ARATH1.176e-2240.38Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
YPTV2_VOLCA1.536e-2240.88GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
RAB8B_DICDI1.536e-2243.65Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RAB1B_MOUSE1.536e-2247.86Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
RABC_DICDI2.007e-2242.95Ras-related protein RabC OS=Dictyostelium discoide... [more]
RAB8B_RAT2.007e-2242.98Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_PONAB2.007e-2242.98Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_MOUSE2.007e-2242.98Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB8B_HUMAN2.007e-2242.98Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-005-E10-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735826 ID=EY735826; Name=EY735826; organism=Citrus sinensis; type=EST; length=791bp
CCACGCGTCCGAAAAGACTGAAGCTGACAATTTGGGACACAGCTGGACAG
GAGAGATTTGGGACATTGACGAGCTCTTACTATAGAGGTGCACATGGAAT
TATCCTTGTTTATGACGTGACACGACGAGAAACCTTTACCAACTTGTCAA
GTGTATGGGCAAAGGAAGTAGAGCTTTACTCTACCAATCAAGATTGTGTC
AAAATTTTAGTGGGAAATAAAGTTGACAGGGATAGTGAAAGGGCTGTTAC
CAGAGAGGAGGGGATGATTCTTGCACAGGAGCATAAATGTTTGTTTCTTG
AATGTAGTGCTAAAAATACAGAACACGTGAAGCAGTGCTTTAAAGATCTC
TTATATAAGATTCTTGAGGATCCCAGTTTATTAGAACAAGGATCTGCAGT
GGTGAAGAATCAAATTTTGAAACAGAAAGAAGTCCAGGAATCGGCTCGTG
GTGGTAATTGCTGCTCTTAATTGATGCCCCCAACAAAGTGATTCAGCACA
AACATACTACCCGATAAATCAAAATGGAAGTCCAGAAACTATCAGCACAA
TTGGATGCGGGTGCTTAGATGGTTGAACACGATCCAGAATCGCATACATT
ACATGTATGGTCGAACATGCTCCAGAACCGGATCAAGGAAATGGGTGTTC
ATCGTAGAGTTTCGCGGGAGCGTGCGAGTAGCCGGAATCGTAGGGTGGAA
ACCGCGAGGGGCGGGTGCGCGTGGCATAAGGCGGTCATCTTGGCCCCATC
CTCAGCGGCATCGCGGCCGTGAGCCACTACATCCCCCTGCG
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