EY735821

Overview
NameEY735821
Unique NameEY735821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_STAAB (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=mfd PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.013e-34
Identity = 89/257 (34.63%), Postives = 139/257 (54.09%), Query Frame = 2
Query:   29 EGLLDKYRKPRLNAAYMEGWSSLTKKLLRA-LPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYIIEGN 796
            E L+D Y++  +   Y  G  +  +       PY LT  Q  +I EI  D+++  PM+RLL GDVG GKT VA  A  + +  G Q AF+VPT +LA QHYE L++ + +   +     I L++     K+ +  ++ L+TG + +V+GTH L+++ +++  L L IVDE+QRFGV  + R  +  +           N D            VL ++ATPIPRTL +++ G   L+ I   P  R P++TY++E N
Sbjct:  584 EELIDLYKEREMAEGYQYGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVE-----IQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKH-----------NVD------------VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQN 812          
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_STAA8 (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain NCTC 8325) GN=mfd PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.013e-34
Identity = 89/257 (34.63%), Postives = 139/257 (54.09%), Query Frame = 2
Query:   29 EGLLDKYRKPRLNAAYMEGWSSLTKKLLRA-LPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYIIEGN 796
            E L+D Y++  +   Y  G  +  +       PY LT  Q  +I EI  D+++  PM+RLL GDVG GKT VA  A  + +  G Q AF+VPT +LA QHYE L++ + +   +     I L++     K+ +  ++ L+TG + +V+GTH L+++ +++  L L IVDE+QRFGV  + R  +  +           N D            VL ++ATPIPRTL +++ G   L+ I   P  R P++TY++E N
Sbjct:  584 EELIDLYKEREMAEGYQYGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVE-----IQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKH-----------NVD------------VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQN 812          
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_STAA3 (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain USA300) GN=mfd PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.013e-34
Identity = 89/257 (34.63%), Postives = 139/257 (54.09%), Query Frame = 2
Query:   29 EGLLDKYRKPRLNAAYMEGWSSLTKKLLRA-LPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYIIEGN 796
            E L+D Y++  +   Y  G  +  +       PY LT  Q  +I EI  D+++  PM+RLL GDVG GKT VA  A  + +  G Q AF+VPT +LA QHYE L++ + +   +     I L++     K+ +  ++ L+TG + +V+GTH L+++ +++  L L IVDE+QRFGV  + R  +  +           N D            VL ++ATPIPRTL +++ G   L+ I   P  R P++TY++E N
Sbjct:  584 EELIDLYKEREMAEGYQYGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVE-----IQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKH-----------NVD------------VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQN 812          
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_STAHJ (Transcription-repair-coupling factor OS=Staphylococcus haemolyticus (strain JCSC1435) GN=mfd PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.959e-33
Identity = 86/255 (33.73%), Postives = 135/255 (52.94%), Query Frame = 2
Query:   35 LLDKYRKPRLNAAYMEGWSSLTKKLLRA-LPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYIIEGN 796
            L+  Y++  ++  Y  G  +  +       PY LT  Q  +I EI  D+++  PM+RLL GDVG GKT VA  A  + +  G Q AF+VPT +LA QHYE L++ + +        +I L++     K+ +  ++ L++G + +V+GTH L+ + + +  L L IVDE+QRFGV  + R  +              N D            VL ++ATPIPRTL +++ G   L+ I   P  R P++TY++E N
Sbjct:  587 LIALYKEREMSVGYQYGEDTAEQSAFEMDFPYELTPDQAKSIDEIKGDMERERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDF-----PVQIELISRFRSTKEVKETKEGLKSGYVDIVVGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKT-----------MKTNVD------------VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQN 813          
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_STAS1 (Transcription-repair-coupling factor OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=mfd PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.198e-32
Identity = 86/255 (33.73%), Postives = 135/255 (52.94%), Query Frame = 2
Query:   35 LLDKYRKPRLNAAYMEGWSSLTKKLLRA-LPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYIIEGN 796
            L++ Y+   ++  Y  G  +  +       PY LT  Q  +I EI  D++   PM+RLL GDVG GKT VA  A  + +  G Q AF+VPT +LA QHYE L++ + +   +     + L++     K+ +  ++ L++G + +V+GTH L+ + +++  L L IVDE+QRFGV  + R  S              N D            VL ++ATPIPRTL +++ G   L+ I   P  R P++TY++E N
Sbjct:  588 LIELYKAREMSVGYKFGPDTAEQNDFEIDFPYELTPDQSKSIEEIKQDMEIERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPIE-----VQLISRFRTTKEVKETKEGLKSGFVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKS-----------LKNNVD------------VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQN 814          
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_BACSU (Transcription-repair-coupling factor OS=Bacillus subtilis GN=mfd PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.352e-32
Identity = 85/227 (37.44%), Postives = 121/227 (53.30%), Query Frame = 2
Query:  116 ALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYIIEGN 796
            A PY  T  QL +I EI  D+++  PM+RLL GDVG GKT VA  A  + IG G Q A +VPT +LA QHYE + +   +     +   I LL+     K++    K L+ G + +VIGTH L+++ V +  L L I+DE+QRFGV  + +                 N D            VL ++ATPIPRTL +++ G   L+ I   P  R P++TY++E N
Sbjct:  619 AFPYQETEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQVALLVPTTILAQQHYETIKERFQD-----YPINIGLLSRFRTRKEANETIKGLKNGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIK-----------QIKANVD------------VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYN 817          
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_HAEIN (Transcription-repair-coupling factor OS=Haemophilus influenzae GN=mfd PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.816e-28
Identity = 84/245 (34.29%), Postives = 129/245 (52.65%), Query Frame = 2
Query:  122 PYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYIIEGNEKGYENVYKMMLDELXSGGK 856
            P+  T  Q  AI+ +I D+ QP  M+RL+ GDVG GKT VA  A    + +  Q A +VPT LLA QHYE+      N+  +     + +L+     K+ + I ++L  G + ++IGTH LI   V+F+ L L I+DE+ RFGV Q+ +                 N D            +L ++ATPIPRTL +A+ G   L+ I+  P RR+ IKT++ + ++     V + +L E+  GG+
Sbjct:  600 PFEETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVN-----VEVLSRFKTAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIK-----------QLRANID------------ILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTFVRQNDDL---VVREAILREILRGGQ 813          
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_ECOLI (Transcription-repair-coupling factor OS=Escherichia coli (strain K12) GN=mfd PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.397e-27
Identity = 83/249 (33.33%), Postives = 127/249 (51.00%), Query Frame = 2
Query:  116 ALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYIIEGNEKGYEN--VYKMMLDELXSGGK 856
            + P+  T  Q  AI+ ++ D+ QP+ M+RL+ GDVG GKT VA  A    + +  Q A +VPT LLA QHY++      N        +I +++     K+   I  ++  G I ++IGTH L+   V+F  L L IVDE+ RFGV  + R  +              N D            +L ++ATPIPRTL +A+ G   L+ I   P RR+ +KT++ E     Y++  V + +L E+  GG+
Sbjct:  596 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANW-----PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKA-----------MRANVD------------ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVRE-----YDSMVVREAILREILRGGQ 811          
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_RICFE (Transcription-repair-coupling factor OS=Rickettsia felis GN=mfd PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.825e-27
Identity = 82/232 (35.34%), Postives = 125/232 (53.88%), Query Frame = 2
Query:  104 KLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGY----QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYII 787
            K     P+S T  QL+AI++I  DL+  + M+RL+ GDVG GKT VA  A   V  S      Q A +VPT +L +QH+   ++       +     I  L+     K++++IR +L++G I ++IGTHSL+ +  +F  L+L I+DE+Q FGV Q      K +  S+ S                 + HVLAMSATPIPRTL +++ G   L+ I   P  R+ ++T ++
Sbjct:  569 KFCANFPFSETEDQLTAINDIKEDLRNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGLN-----IKQLSSVISAKEAKIIRSELESGKINIIIGTHSLLHKNTKFFNLKLLIIDEEQHFGVGQ------KEFLKSLKS-----------------SSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTMVM 772          
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_MYCTU (Transcription-repair-coupling factor OS=Mycobacterium tuberculosis GN=mfd PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.113e-27
Identity = 78/229 (34.06%), Postives = 115/229 (50.22%), Query Frame = 2
Query:  116 ALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYIIEGNEK 802
            A  ++ T  QL+AI E+  D+++P+PM+R++ GDVG GKT +A  A  + +  G Q A +VPT LLA QH +   + +           I  L+  T   +SR +   L  G + +VIGTH L+   V +  L L +VDE+QRFGV  +    S   +                         VL MSATPIPRTL ++L G   ++ I   P  R P+ TY+   ++K
Sbjct:  644 AFGFTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGERMSGF-----PVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVD-----------------------VLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDK 844          
The following BLAST results are available for this feature:
BLAST of EY735821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
MFD_STAAB2.013e-3434.63Transcription-repair-coupling factor OS=Staphyloco... [more]
MFD_STAA82.013e-3434.63Transcription-repair-coupling factor OS=Staphyloco... [more]
MFD_STAA32.013e-3434.63Transcription-repair-coupling factor OS=Staphyloco... [more]
MFD_STAHJ4.959e-3333.73Transcription-repair-coupling factor OS=Staphyloco... [more]
MFD_STAS14.198e-3233.73Transcription-repair-coupling factor OS=Staphyloco... [more]
MFD_BACSU9.352e-3237.44Transcription-repair-coupling factor OS=Bacillus s... [more]
MFD_HAEIN2.816e-2834.29Transcription-repair-coupling factor OS=Haemophilu... [more]
MFD_ECOLI1.397e-2733.33Transcription-repair-coupling factor OS=Escherichi... [more]
MFD_RICFE1.825e-2735.34Transcription-repair-coupling factor OS=Rickettsia... [more]
MFD_MYCTU3.113e-2734.06Transcription-repair-coupling factor OS=Mycobacter... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-005-E05-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735821 ID=EY735821; Name=EY735821; organism=Citrus sinensis; type=EST; length=864bp
CACGCGTCCGGGTACACAATTTGAGAAAGAGGGATTGCTGGATAAGTACA
GAAAACCTAGATTAAATGCTGCATATATGGAGGGATGGTCCAGTCTGACC
AAGAAACTTTTAAGAGCTCTTCCTTATTCCCTTACGTCTAGTCAGCTAAG
TGCCATTTCAGAAATTATATGGGATCTCAAGCAACCAGTTCCTATGAATC
GGCTTTTGCAGGGTGATGTTGGATGTGGTAAAACTGTGGTAGCTTTTTTG
GCTTGCATGGAGGTTATAGGCTCTGGTTATCAGGCAGCTTTTATGGTTCC
AACTGAGTTGCTTGCAACCCAGCACTATGAGCACTTGCTTAAATTGCTAG
ATAATATGGAGGAGGACAAGCACAAACCTAAAATTGCCTTACTAACAGGT
TCAACACCAGTAAAACAATCCCGGATGATCCGTAAGGATCTTCAAACTGG
AGATATCACTCTGGTCATTGGAACCCATAGTTTAATTGCTGAAAAAGTTG
AATTTTCTGCTTTACGCCTCGCTATTGTGGATGAACAACAACGCTTTGGT
GTGGTACAGAGAGGCAGATTTAACAGTAAGTTATATTATACCTCCATGAG
TTCAGGTATGGCAATGGTTAATTCAGACGGGTCTCCAAAAGATGATCAAC
ATATGGCTCCTCATGTTCTTGCCATGTCAGCCACTCCTATCCCAAGAACG
CTTGCTTTGGCATTATATGGGGATATGTCCCTTACACAGATAACTGACTT
ACCTCCCAGAAGGATACCTATTAAGACCTACATCATTGAAGGAAATGAGA
AGGGCTATGAGAATGTGTACAAGATGATGCTTGACGAACTGNCATCAGGT
GGAAAATGTCCCTT
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