EY735821
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_MYCBO (Transcription-repair-coupling factor OS=Mycobacterium bovis GN=mfd PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 3.113e-27 Identity = 78/229 (34.06%), Postives = 115/229 (50.22%), Query Frame = 2 Query: 116 ALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYIIEGNEK 802 A ++ T QL+AI E+ D+++P+PM+R++ GDVG GKT +A A + + G Q A +VPT LLA QH + + + I L+ T +SR + L G + +VIGTH L+ V + L L +VDE+QRFGV + S + VL MSATPIPRTL ++L G ++ I P R P+ TY+ ++K Sbjct: 644 AFGFTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGERMSGF-----PVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVD-----------------------VLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDK 844
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_RICBR (Transcription-repair-coupling factor OS=Rickettsia bellii (strain RML369-C) GN=mfd PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 5.310e-27 Identity = 80/232 (34.48%), Postives = 125/232 (53.88%), Query Frame = 2 Query: 104 KLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS----GYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYII 787 K P++ T QL+AI++I DL + M+RL+ GDVG GKT VA A V S Q A +VPT +L +QH+ + + + + I L+ K+++++R +L++G I ++IGTHSL+ + +F L+L I+DE+Q FGV Q K + S+ S + HVLAMSATPIPRTL +++ G L+ I P R+ ++T ++ Sbjct: 568 KFCAKFPFTETEDQLNAINDIREDLSNGMLMDRLICGDVGFGKTEVAMRAAFMVAKSLNENSPQVAVVVPTTILCSQHFARFTERFKDSDLN-----IKQLSSVVSSKEAKIVRSELESGKINIIIGTHSLLHKVTKFCNLKLLIIDEEQHFGVGQ------KEFLKSLKS-----------------STHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVM 771
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_SYNY3 (Transcription-repair-coupling factor OS=Synechocystis sp. (strain PCC 6803) GN=mfd PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 9.058e-27 Identity = 87/256 (33.98%), Postives = 131/256 (51.17%), Query Frame = 2 Query: 101 KKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSG-YQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKP---KIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYIIEGNEKGYENVYKMMLDELXSGGK 856 ++L + PY T QL A+ ++ DL+ PM+RL+ GDVG GKT VA A + + SG Q A + PT +L QHY H LK ++ P I LL + + I L++G++ +V+GT ++ V+F L L ++DE+QRFGV Q+ + K T + VL ++ATPIPRTL ++L G ++ IT PP R PIKT++ N E + + +EL GG+ Sbjct: 636 QELEDSFPYQPTPDQLKAVQDVKRDLEGDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGNKQVALLAPTTVLTQQHY-HTLK-------ERFAPYPITIGLLNRFRTASEKKEILAKLKSGELDIVVGTQQVLGTSVKFKDLGLLVIDEEQRFGVNQKEKI--KTLKTEVD---------------------VLTLTATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYNP---EVIRTAIRNELDRGGQ 857
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_RICCN (Transcription-repair-coupling factor OS=Rickettsia conorii GN=mfd PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 9.058e-27 Identity = 82/232 (35.34%), Postives = 124/232 (53.45%), Query Frame = 2 Query: 104 KLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGY----QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYII 787 K P+S T QL AI++I DL+ + M+RL+ GDVG GKT VA A V S Q A +VPT +L +QH+ ++ + I L+ K++++IR +L++G I ++IGTHSL+ + ++F L+L I+DE+Q FGV Q K + S+ S + HVLAMSATPIPRTL +++ G L+ I P R+ + T ++ Sbjct: 570 KFCANFPFSETEDQLIAINDIKEDLRNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGLN-----IKQLSSVISSKEAKIIRSELESGKINIIIGTHSLLHKNIKFFNLKLLIIDEEQHFGVGQ------KEFLKSLKS-----------------SSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVHTSVM 773
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_BUCAI (Transcription-repair-coupling factor OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=mfd PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 9.058e-27 Identity = 81/244 (33.20%), Postives = 126/244 (51.64%), Query Frame = 2 Query: 125 YSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYIIEGNEKGYENVYKMMLDELXSGGK 856 + TS Q + ++ D+ +P+PM+RL+ GDVG GKT +A A + + Q A +VPT LLA QHY++ N + I +L+ K+ +I K + G I ++IGTH L+ + +E+ +L L I+DE+ RFGV + K+Y N D +L ++ATPIPRTL +A+ G L+ I P +R+ IKT+I E + K +L E+ GG+ Sbjct: 264 FKTTSDQNEVMKFVLKDMSKPIPMDRLICGDVGFGKTEIAMRASFLAVSNKKQVAILVPTTLLAQQHYKNFKIRFSNWPVN-----INILSRFQTQKEQDLIFKHTKNGRINIIIGTHKLLFKNIEWCSLGLLIIDEEHRFGVSHK-EIIKKIY----------SNID------------ILTLTATPIPRTLNMAMTGIKDLSIIAKPPAQRLAIKTFI---QEYSPILIRKTILREISRGGQ 476
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_RICTY (Transcription-repair-coupling factor OS=Rickettsia typhi GN=mfd PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 5.871e-26 Identity = 81/232 (34.91%), Postives = 122/232 (52.59%), Query Frame = 2 Query: 104 KLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGY----QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYII 787 K P+ T QL+AI++I DL + M+RL+ GDVG GKT VA A V S Q A +VPT +L +QH+ ++ + I L+ +++ +IR +L +G I ++IGTH+L+ + ++F L+L I+DE+Q FGV Q+ F L Y+S HVLAMSATPIPRTL ++L G L+ I P R+ ++T ++ Sbjct: 568 KFCANFPFIETEDQLTAINDIRKDLTNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEYLPQVAVVVPTTILCSQHFSRFIERFKGFGLN-----IKQLSSVVSSQEANIIRLELASGKINIIIGTHTLLHKNIKFFNLKLLIIDEEQHFGVSQK-EFLKSLKYSS----------------------HVLAMSATPIPRTLQMSLTGLKELSIIATPPLNRLEVRTSVM 771
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_RICPR (Transcription-repair-coupling factor OS=Rickettsia prowazekii GN=mfd PE=3 SV=2) HSP 1 Score: 117.472 bits (293), Expect = 1.001e-25 Identity = 81/232 (34.91%), Postives = 122/232 (52.59%), Query Frame = 2 Query: 104 KLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGY----QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYII 787 K P+S T QL+AI++I DL + M+RL+ GDVG GKT VA A V S Q A +VPT +L +QH+ ++ + I L+ K++ +IR +L +G I ++IGTH+L+ + +F L+L I+DE+Q FGV Q K + S+ S + HVLAMSATPIPRTL +++ G L+ I P R+ ++T ++ Sbjct: 568 KFCANFPFSETEDQLTAINDIREDLTNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEYLPQVAVVVPTTILCSQHFSRFIERFKGFGLN-----IKQLSSVISSKEANIIRLELASGKINIIIGTHALLHKNTKFFNLKLLIIDEEQHFGVSQ------KEFLKSLKS-----------------STHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVM 771
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: RECG_THIFE (ATP-dependent DNA helicase recG OS=Thiobacillus ferrooxidans GN=recG PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.708e-25 Identity = 79/209 (37.80%), Postives = 104/209 (49.76%), Query Frame = 2 Query: 65 NAAYMEGWSSLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPI 691 NA + L + L LP+S T +Q I+EI DL + PM RLLQGDVG GKT+VA A + + +GYQ A M PTE+LA Q + + L+ + + + L GS + R + L G + LVIGT SL E V F+ L L I+DEQ RFGV QR + K PH+L M+ATPI Sbjct: 264 NAPCLRSKGQLWHRFLAHLPFSPTMAQERVIAEINADLVRHRPMRRLLQGDVGSGKTLVAAAATLTALEAGYQVAMMAPTEILAEQLHARFQQWLEPLGLE-----VGYLVGSRSPRARRETAETLAGGSLRLVIGTQSLFQEGVVFACLGLVIIDEQHRFGVEQRRQLLEK-----------------------GAMPHLLVMTATPI 444
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_BUCBP (Transcription-repair-coupling factor OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=mfd PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 4.970e-25 Identity = 78/245 (31.84%), Postives = 126/245 (51.43%), Query Frame = 2 Query: 122 PYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYIIEGNEKGYENVYKMMLDELXSGGK 856 P++LT Q SAI+ ++ D+ + PM+RL+ GDVG GKT VA A + + Q A +VPT LLA QH+ + + KI +L+ + I ++ G++ ++IGTH ++ + +++ L L IVDE+ RFGV + + KL ++ VL ++ATPIPRTL +A G L+ I P +R+ +KT++ E Y + K +L E+ GG+ Sbjct: 151 PFTLTPDQDSAINSVLSDMYKSTPMDRLVCGDVGFGKTEVAMRATFLAVCNQKQVAILVPTTLLAQQHFNNF-----TLRFKYWSTKIEILSRFQSETKCNEIINNVNIGNVHVLIGTHKILLKNLKWKNLGLLIVDEEHRFGVHHKEQI--KLISNNID---------------------VLTLTATPIPRTLNMAFVGIRDLSIIATPPKQRLIVKTFV---REFSYTVIRKAILREILRGGQ 364
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: RECG_HELPJ (ATP-dependent DNA helicase recG OS=Helicobacter pylori J99 GN=recG PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 7.177e-24 Identity = 84/227 (37.00%), Postives = 113/227 (49.78%), Query Frame = 2 Query: 89 SSLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLP-PRRI 766 S K + +LP+ LT Q +AI EI DL P+ RL+ GDVGCGKT+V LA M V+ + M PT +LA Q Y LK L E + LL G + K+S + + + +VIGT +L+ +K + + L I DEQ RFG QR + M +S G+ PH L SATPIPRTLALA + T I ++P P+ I Sbjct: 218 SERLKAFIASLPFKLTRDQQNAIKEIQSDLTSPIACKRLIIGDVGCGKTMV-ILASM-VLAYPNKTLLMAPTSILAKQLYHEALKFLPPYFE------VELLLGGSHKKRSNHLFEKI----THVVIGTQALLFDKRDLNEFALVITDEQHRFGTKQRYQLEK------------MASSKGN-------KPHSLQFSATPIPRTLALAKSAFVKTTMIREIPYPKEI 413 The following BLAST results are available for this feature:
BLAST of EY735821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY735821 ID=EY735821; Name=EY735821; organism=Citrus sinensis; type=EST; length=864bpback to top |