EY735821

Overview
NameEY735821
Unique NameEY735821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_MYCBO (Transcription-repair-coupling factor OS=Mycobacterium bovis GN=mfd PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.113e-27
Identity = 78/229 (34.06%), Postives = 115/229 (50.22%), Query Frame = 2
Query:  116 ALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYIIEGNEK 802
            A  ++ T  QL+AI E+  D+++P+PM+R++ GDVG GKT +A  A  + +  G Q A +VPT LLA QH +   + +           I  L+  T   +SR +   L  G + +VIGTH L+   V +  L L +VDE+QRFGV  +    S   +                         VL MSATPIPRTL ++L G   ++ I   P  R P+ TY+   ++K
Sbjct:  644 AFGFTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGERMSGF-----PVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVD-----------------------VLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDK 844          
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_RICBR (Transcription-repair-coupling factor OS=Rickettsia bellii (strain RML369-C) GN=mfd PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.310e-27
Identity = 80/232 (34.48%), Postives = 125/232 (53.88%), Query Frame = 2
Query:  104 KLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS----GYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYII 787
            K     P++ T  QL+AI++I  DL   + M+RL+ GDVG GKT VA  A   V  S      Q A +VPT +L +QH+    +   + + +     I  L+     K+++++R +L++G I ++IGTHSL+ +  +F  L+L I+DE+Q FGV Q      K +  S+ S                 + HVLAMSATPIPRTL +++ G   L+ I   P  R+ ++T ++
Sbjct:  568 KFCAKFPFTETEDQLNAINDIREDLSNGMLMDRLICGDVGFGKTEVAMRAAFMVAKSLNENSPQVAVVVPTTILCSQHFARFTERFKDSDLN-----IKQLSSVVSSKEAKIVRSELESGKINIIIGTHSLLHKVTKFCNLKLLIIDEEQHFGVGQ------KEFLKSLKS-----------------STHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVM 771          
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_SYNY3 (Transcription-repair-coupling factor OS=Synechocystis sp. (strain PCC 6803) GN=mfd PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.058e-27
Identity = 87/256 (33.98%), Postives = 131/256 (51.17%), Query Frame = 2
Query:  101 KKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSG-YQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKP---KIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYIIEGNEKGYENVYKMMLDELXSGGK 856
            ++L  + PY  T  QL A+ ++  DL+   PM+RL+ GDVG GKT VA  A  + + SG  Q A + PT +L  QHY H LK       ++  P    I LL       + + I   L++G++ +V+GT  ++   V+F  L L ++DE+QRFGV Q+ +   K   T +                      VL ++ATPIPRTL ++L G   ++ IT  PP R PIKT++   N    E +   + +EL  GG+
Sbjct:  636 QELEDSFPYQPTPDQLKAVQDVKRDLEGDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGNKQVALLAPTTVLTQQHY-HTLK-------ERFAPYPITIGLLNRFRTASEKKEILAKLKSGELDIVVGTQQVLGTSVKFKDLGLLVIDEEQRFGVNQKEKI--KTLKTEVD---------------------VLTLTATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYNP---EVIRTAIRNELDRGGQ 857          
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_RICCN (Transcription-repair-coupling factor OS=Rickettsia conorii GN=mfd PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.058e-27
Identity = 82/232 (35.34%), Postives = 124/232 (53.45%), Query Frame = 2
Query:  104 KLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGY----QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYII 787
            K     P+S T  QL AI++I  DL+  + M+RL+ GDVG GKT VA  A   V  S      Q A +VPT +L +QH+   ++       +     I  L+     K++++IR +L++G I ++IGTHSL+ + ++F  L+L I+DE+Q FGV Q      K +  S+ S                 + HVLAMSATPIPRTL +++ G   L+ I   P  R+ + T ++
Sbjct:  570 KFCANFPFSETEDQLIAINDIKEDLRNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGLN-----IKQLSSVISSKEAKIIRSELESGKINIIIGTHSLLHKNIKFFNLKLLIIDEEQHFGVGQ------KEFLKSLKS-----------------SSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVHTSVM 773          
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_BUCAI (Transcription-repair-coupling factor OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=mfd PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.058e-27
Identity = 81/244 (33.20%), Postives = 126/244 (51.64%), Query Frame = 2
Query:  125 YSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYIIEGNEKGYENVYKMMLDELXSGGK 856
            +  TS Q   +  ++ D+ +P+PM+RL+ GDVG GKT +A  A    + +  Q A +VPT LLA QHY++      N   +     I +L+     K+  +I K  + G I ++IGTH L+ + +E+ +L L I+DE+ RFGV  +     K+Y           N D            +L ++ATPIPRTL +A+ G   L+ I   P +R+ IKT+I    E     + K +L E+  GG+
Sbjct:  264 FKTTSDQNEVMKFVLKDMSKPIPMDRLICGDVGFGKTEIAMRASFLAVSNKKQVAILVPTTLLAQQHYKNFKIRFSNWPVN-----INILSRFQTQKEQDLIFKHTKNGRINIIIGTHKLLFKNIEWCSLGLLIIDEEHRFGVSHK-EIIKKIY----------SNID------------ILTLTATPIPRTLNMAMTGIKDLSIIAKPPAQRLAIKTFI---QEYSPILIRKTILREISRGGQ 476          
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_RICTY (Transcription-repair-coupling factor OS=Rickettsia typhi GN=mfd PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.871e-26
Identity = 81/232 (34.91%), Postives = 122/232 (52.59%), Query Frame = 2
Query:  104 KLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGY----QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYII 787
            K     P+  T  QL+AI++I  DL   + M+RL+ GDVG GKT VA  A   V  S      Q A +VPT +L +QH+   ++       +     I  L+     +++ +IR +L +G I ++IGTH+L+ + ++F  L+L I+DE+Q FGV Q+  F   L Y+S                      HVLAMSATPIPRTL ++L G   L+ I   P  R+ ++T ++
Sbjct:  568 KFCANFPFIETEDQLTAINDIRKDLTNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEYLPQVAVVVPTTILCSQHFSRFIERFKGFGLN-----IKQLSSVVSSQEANIIRLELASGKINIIIGTHTLLHKNIKFFNLKLLIIDEEQHFGVSQK-EFLKSLKYSS----------------------HVLAMSATPIPRTLQMSLTGLKELSIIATPPLNRLEVRTSVM 771          
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_RICPR (Transcription-repair-coupling factor OS=Rickettsia prowazekii GN=mfd PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.001e-25
Identity = 81/232 (34.91%), Postives = 122/232 (52.59%), Query Frame = 2
Query:  104 KLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGY----QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYII 787
            K     P+S T  QL+AI++I  DL   + M+RL+ GDVG GKT VA  A   V  S      Q A +VPT +L +QH+   ++       +     I  L+     K++ +IR +L +G I ++IGTH+L+ +  +F  L+L I+DE+Q FGV Q      K +  S+ S                 + HVLAMSATPIPRTL +++ G   L+ I   P  R+ ++T ++
Sbjct:  568 KFCANFPFSETEDQLTAINDIREDLTNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEYLPQVAVVVPTTILCSQHFSRFIERFKGFGLN-----IKQLSSVISSKEANIIRLELASGKINIIIGTHALLHKNTKFFNLKLLIIDEEQHFGVSQ------KEFLKSLKS-----------------STHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVM 771          
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: RECG_THIFE (ATP-dependent DNA helicase recG OS=Thiobacillus ferrooxidans GN=recG PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.708e-25
Identity = 79/209 (37.80%), Postives = 104/209 (49.76%), Query Frame = 2
Query:   65 NAAYMEGWSSLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPI 691
            NA  +     L  + L  LP+S T +Q   I+EI  DL +  PM RLLQGDVG GKT+VA  A +  + +GYQ A M PTE+LA Q +    + L+ +  +     +  L GS   +  R   + L  G + LVIGT SL  E V F+ L L I+DEQ RFGV QR +   K                          PH+L M+ATPI
Sbjct:  264 NAPCLRSKGQLWHRFLAHLPFSPTMAQERVIAEINADLVRHRPMRRLLQGDVGSGKTLVAAAATLTALEAGYQVAMMAPTEILAEQLHARFQQWLEPLGLE-----VGYLVGSRSPRARRETAETLAGGSLRLVIGTQSLFQEGVVFACLGLVIIDEQHRFGVEQRRQLLEK-----------------------GAMPHLLVMTATPI 444          
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_BUCBP (Transcription-repair-coupling factor OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=mfd PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.970e-25
Identity = 78/245 (31.84%), Postives = 126/245 (51.43%), Query Frame = 2
Query:  122 PYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYIIEGNEKGYENVYKMMLDELXSGGK 856
            P++LT  Q SAI+ ++ D+ +  PM+RL+ GDVG GKT VA  A    + +  Q A +VPT LLA QH+ +       +       KI +L+      +   I  ++  G++ ++IGTH ++ + +++  L L IVDE+ RFGV  + +   KL   ++                      VL ++ATPIPRTL +A  G   L+ I   P +R+ +KT++    E  Y  + K +L E+  GG+
Sbjct:  151 PFTLTPDQDSAINSVLSDMYKSTPMDRLVCGDVGFGKTEVAMRATFLAVCNQKQVAILVPTTLLAQQHFNNF-----TLRFKYWSTKIEILSRFQSETKCNEIINNVNIGNVHVLIGTHKILLKNLKWKNLGLLIVDEEHRFGVHHKEQI--KLISNNID---------------------VLTLTATPIPRTLNMAFVGIRDLSIIATPPKQRLIVKTFV---REFSYTVIRKAILREILRGGQ 364          
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: RECG_HELPJ (ATP-dependent DNA helicase recG OS=Helicobacter pylori J99 GN=recG PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.177e-24
Identity = 84/227 (37.00%), Postives = 113/227 (49.78%), Query Frame = 2
Query:   89 SSLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLP-PRRI 766
            S   K  + +LP+ LT  Q +AI EI  DL  P+   RL+ GDVGCGKT+V  LA M V+    +   M PT +LA Q Y   LK L    E      + LL G +  K+S  + + +      +VIGT +L+ +K + +   L I DEQ RFG  QR +               M +S G+        PH L  SATPIPRTLALA    +  T I ++P P+ I
Sbjct:  218 SERLKAFIASLPFKLTRDQQNAIKEIQSDLTSPIACKRLIIGDVGCGKTMV-ILASM-VLAYPNKTLLMAPTSILAKQLYHEALKFLPPYFE------VELLLGGSHKKRSNHLFEKI----THVVIGTQALLFDKRDLNEFALVITDEQHRFGTKQRYQLEK------------MASSKGN-------KPHSLQFSATPIPRTLALAKSAFVKTTMIREIPYPKEI 413          
The following BLAST results are available for this feature:
BLAST of EY735821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
MFD_MYCBO3.113e-2734.06Transcription-repair-coupling factor OS=Mycobacter... [more]
MFD_RICBR5.310e-2734.48Transcription-repair-coupling factor OS=Rickettsia... [more]
MFD_SYNY39.058e-2733.98Transcription-repair-coupling factor OS=Synechocys... [more]
MFD_RICCN9.058e-2735.34Transcription-repair-coupling factor OS=Rickettsia... [more]
MFD_BUCAI9.058e-2733.20Transcription-repair-coupling factor OS=Buchnera a... [more]
MFD_RICTY5.871e-2634.91Transcription-repair-coupling factor OS=Rickettsia... [more]
MFD_RICPR1.001e-2534.91Transcription-repair-coupling factor OS=Rickettsia... [more]
RECG_THIFE1.708e-2537.80ATP-dependent DNA helicase recG OS=Thiobacillus fe... [more]
MFD_BUCBP4.970e-2531.84Transcription-repair-coupling factor OS=Buchnera a... [more]
RECG_HELPJ7.177e-2437.00ATP-dependent DNA helicase recG OS=Helicobacter py... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-005-E05-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735821 ID=EY735821; Name=EY735821; organism=Citrus sinensis; type=EST; length=864bp
CACGCGTCCGGGTACACAATTTGAGAAAGAGGGATTGCTGGATAAGTACA
GAAAACCTAGATTAAATGCTGCATATATGGAGGGATGGTCCAGTCTGACC
AAGAAACTTTTAAGAGCTCTTCCTTATTCCCTTACGTCTAGTCAGCTAAG
TGCCATTTCAGAAATTATATGGGATCTCAAGCAACCAGTTCCTATGAATC
GGCTTTTGCAGGGTGATGTTGGATGTGGTAAAACTGTGGTAGCTTTTTTG
GCTTGCATGGAGGTTATAGGCTCTGGTTATCAGGCAGCTTTTATGGTTCC
AACTGAGTTGCTTGCAACCCAGCACTATGAGCACTTGCTTAAATTGCTAG
ATAATATGGAGGAGGACAAGCACAAACCTAAAATTGCCTTACTAACAGGT
TCAACACCAGTAAAACAATCCCGGATGATCCGTAAGGATCTTCAAACTGG
AGATATCACTCTGGTCATTGGAACCCATAGTTTAATTGCTGAAAAAGTTG
AATTTTCTGCTTTACGCCTCGCTATTGTGGATGAACAACAACGCTTTGGT
GTGGTACAGAGAGGCAGATTTAACAGTAAGTTATATTATACCTCCATGAG
TTCAGGTATGGCAATGGTTAATTCAGACGGGTCTCCAAAAGATGATCAAC
ATATGGCTCCTCATGTTCTTGCCATGTCAGCCACTCCTATCCCAAGAACG
CTTGCTTTGGCATTATATGGGGATATGTCCCTTACACAGATAACTGACTT
ACCTCCCAGAAGGATACCTATTAAGACCTACATCATTGAAGGAAATGAGA
AGGGCTATGAGAATGTGTACAAGATGATGCTTGACGAACTGNCATCAGGT
GGAAAATGTCCCTT
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