EY735821
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_HELPJ (Transcription-repair-coupling factor OS=Helicobacter pylori J99 GN=mfd PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 7.177e-24 Identity = 77/226 (34.07%), Postives = 113/226 (50.00%), Query Frame = 2 Query: 125 YSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYIIEGNEK 802 + TS Q AI+EI DL M+RLL GDVG GKT VA A +G+Q+A +VPT LLA QH+E L +N K+A L + + K ++ G + ++IGTH+++ K F L L +VDE+ +FGV Q+ + + H L+MSATPIPRTL +AL ++ + P R P +T++ E N++ Sbjct: 483 FEYTSDQEKAIAEISRDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPTTLLAHQHFETLKARFENF-----GVKVARLDRYIKTSEKSKLLKAVELGLVDVLIGTHAILGTK--FKNLGLMVVDEEHKFGVKQKEALK-----------------------ELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKTPPTDRKPSRTFLKEKNDE 678
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_MYXXA (Transcription-repair-coupling factor OS=Myxococcus xanthus GN=mfd PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 9.373e-24 Identity = 71/219 (32.42%), Postives = 114/219 (52.05%), Query Frame = 2 Query: 134 TSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYIIE 790 T Q AI +++ D+++P PM+RL+ GDVG GKT VA A + Q A +VPT +LA QH+ K + + + +++G + R I K + G + ++IGTH L+ +V F L L IVDE+QRFGV Q+ S+ + ++ VL ++ATPIPRTL +++ G ++ I P R I+T++++ Sbjct: 657 TPDQAKAIEDVLADMQKPEPMDRLVCGDVGYGKTEVAMRAAFKAALDRKQVAVLVPTTVLAQQHFLSFKKRFAD-----YPVTVEVISGLKKAPEVREILKRAKEGKVDILIGTHKLLGGEVAFKELGLMIVDEEQRFGVKQK---------ESLKKWRSQID--------------VLTLTATPIPRTLHMSMSGVRDMSIIATPPQDRRAIRTFVMK 847
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_HELPY (Transcription-repair-coupling factor OS=Helicobacter pylori GN=mfd PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.562e-23 Identity = 77/226 (34.07%), Postives = 112/226 (49.56%), Query Frame = 2 Query: 125 YSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYIIEGNEK 802 + TS Q AI+EI DL M+RLL GDVG GKT VA A +G+Q+A +VPT LLA QH+E L +N K+A L + + K ++ G + +IGTH+++ K F L L +VDE+ +FGV Q+ + + H L+MSATPIPRTL +AL ++ + P R P +T++ E N++ Sbjct: 483 FEYTSDQEKAIAEISKDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPTTLLAHQHFETLRARFENF-----GVKVARL--DRYASEKNKLLKAVELGQVDALIGTHAILGAK--FKNLGLVVVDEEHKFGVKQKEALK-----------------------ELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKTPPTDRKPSRTFLKEKNDE 676
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: RECG_HELPY (ATP-dependent DNA helicase recG OS=Helicobacter pylori GN=recG PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 2.309e-22 Identity = 82/223 (36.77%), Postives = 111/223 (49.78%), Query Frame = 2 Query: 101 KKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLP-PRRI 766 K + +LP+ LT Q +AI EI DL + RL+ GDVGCGKT+V LA M V+ + M PT +LA Q Y LK L E + LL G + K+S + + + +VIGT +L+ +K + + L I DEQ RFG QR + M +S G+ PH L SATPIPRTLALA + T I ++P P+ I Sbjct: 222 KAFIASLPFKLTRDQQNAIKEIQNDLTSSIACKRLIIGDVGCGKTMV-ILASM-VLTYPNKTLLMAPTSILAKQLYNEALKFLPPYFE------VELLLGGSYKKRSNHLFETI----THVVIGTQALLFDKRDLNEFALVITDEQHRFGTKQRYQLEK------------MASSKGN-------KPHSLQFSATPIPRTLALAKSAFVKTTMIREIPYPKEI 413
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_BORBU (Transcription-repair-coupling factor OS=Borrelia burgdorferi GN=mfd PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.146e-21 Identity = 70/221 (31.67%), Postives = 107/221 (48.42%), Query Frame = 2 Query: 122 PYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYI 784 PY T Q+ AI EI D+ M+RLL GDVG GKT VA A + + Q + PT +LA QH+ K N KI +L+ I K+L++G I ++IGTH ++++K L L I+DE+QRFGV ++ + + ++ LA+SATPIPR+L ++L ++ + P R+ I+ Y+ Sbjct: 580 PYDETPDQIRAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSPTTILAEQHFNTFKKRFKNF-----PIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKKFTCKNLGLIIIDEEQRFGVKEKEKLK-----------------------EIRISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIEAYL 772 The following BLAST results are available for this feature:
BLAST of EY735821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY735821 ID=EY735821; Name=EY735821; organism=Citrus sinensis; type=EST; length=864bpback to top |