EY735821

Overview
NameEY735821
Unique NameEY735821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_HELPJ (Transcription-repair-coupling factor OS=Helicobacter pylori J99 GN=mfd PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.177e-24
Identity = 77/226 (34.07%), Postives = 113/226 (50.00%), Query Frame = 2
Query:  125 YSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYIIEGNEK 802
            +  TS Q  AI+EI  DL     M+RLL GDVG GKT VA  A      +G+Q+A +VPT LLA QH+E L    +N        K+A L       +   + K ++ G + ++IGTH+++  K  F  L L +VDE+ +FGV Q+                           +   + H L+MSATPIPRTL +AL     ++ +   P  R P +T++ E N++
Sbjct:  483 FEYTSDQEKAIAEISRDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPTTLLAHQHFETLKARFENF-----GVKVARLDRYIKTSEKSKLLKAVELGLVDVLIGTHAILGTK--FKNLGLMVVDEEHKFGVKQKEALK-----------------------ELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKTPPTDRKPSRTFLKEKNDE 678          
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_MYXXA (Transcription-repair-coupling factor OS=Myxococcus xanthus GN=mfd PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.373e-24
Identity = 71/219 (32.42%), Postives = 114/219 (52.05%), Query Frame = 2
Query:  134 TSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYIIE 790
            T  Q  AI +++ D+++P PM+RL+ GDVG GKT VA  A  +      Q A +VPT +LA QH+    K   +     +   + +++G     + R I K  + G + ++IGTH L+  +V F  L L IVDE+QRFGV Q+          S+    + ++              VL ++ATPIPRTL +++ G   ++ I   P  R  I+T++++
Sbjct:  657 TPDQAKAIEDVLADMQKPEPMDRLVCGDVGYGKTEVAMRAAFKAALDRKQVAVLVPTTVLAQQHFLSFKKRFAD-----YPVTVEVISGLKKAPEVREILKRAKEGKVDILIGTHKLLGGEVAFKELGLMIVDEEQRFGVKQK---------ESLKKWRSQID--------------VLTLTATPIPRTLHMSMSGVRDMSIIATPPQDRRAIRTFVMK 847          
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_HELPY (Transcription-repair-coupling factor OS=Helicobacter pylori GN=mfd PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.562e-23
Identity = 77/226 (34.07%), Postives = 112/226 (49.56%), Query Frame = 2
Query:  125 YSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYIIEGNEK 802
            +  TS Q  AI+EI  DL     M+RLL GDVG GKT VA  A      +G+Q+A +VPT LLA QH+E L    +N        K+A L       +   + K ++ G +  +IGTH+++  K  F  L L +VDE+ +FGV Q+                           +   + H L+MSATPIPRTL +AL     ++ +   P  R P +T++ E N++
Sbjct:  483 FEYTSDQEKAIAEISKDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPTTLLAHQHFETLRARFENF-----GVKVARL--DRYASEKNKLLKAVELGQVDALIGTHAILGAK--FKNLGLVVVDEEHKFGVKQKEALK-----------------------ELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKTPPTDRKPSRTFLKEKNDE 676          
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: RECG_HELPY (ATP-dependent DNA helicase recG OS=Helicobacter pylori GN=recG PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.309e-22
Identity = 82/223 (36.77%), Postives = 111/223 (49.78%), Query Frame = 2
Query:  101 KKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLP-PRRI 766
            K  + +LP+ LT  Q +AI EI  DL   +   RL+ GDVGCGKT+V  LA M V+    +   M PT +LA Q Y   LK L    E      + LL G +  K+S  + + +      +VIGT +L+ +K + +   L I DEQ RFG  QR +               M +S G+        PH L  SATPIPRTLALA    +  T I ++P P+ I
Sbjct:  222 KAFIASLPFKLTRDQQNAIKEIQNDLTSSIACKRLIIGDVGCGKTMV-ILASM-VLTYPNKTLLMAPTSILAKQLYNEALKFLPPYFE------VELLLGGSYKKRSNHLFETI----THVVIGTQALLFDKRDLNEFALVITDEQHRFGTKQRYQLEK------------MASSKGN-------KPHSLQFSATPIPRTLALAKSAFVKTTMIREIPYPKEI 413          
BLAST of EY735821 vs. ExPASy Swiss-Prot
Match: MFD_BORBU (Transcription-repair-coupling factor OS=Borrelia burgdorferi GN=mfd PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.146e-21
Identity = 70/221 (31.67%), Postives = 107/221 (48.42%), Query Frame = 2
Query:  122 PYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPRRIPIKTYI 784
            PY  T  Q+ AI EI  D+     M+RLL GDVG GKT VA  A  + +    Q   + PT +LA QH+    K   N        KI +L+          I K+L++G I ++IGTH ++++K     L L I+DE+QRFGV ++ +                         +  ++   LA+SATPIPR+L ++L     ++ +   P  R+ I+ Y+
Sbjct:  580 PYDETPDQIRAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSPTTILAEQHFNTFKKRFKNF-----PIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKKFTCKNLGLIIIDEEQRFGVKEKEKLK-----------------------EIRISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIEAYL 772          
The following BLAST results are available for this feature:
BLAST of EY735821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
MFD_HELPJ7.177e-2434.07Transcription-repair-coupling factor OS=Helicobact... [more]
MFD_MYXXA9.373e-2432.42Transcription-repair-coupling factor OS=Myxococcus... [more]
MFD_HELPY3.562e-2334.07Transcription-repair-coupling factor OS=Helicobact... [more]
RECG_HELPY2.309e-2236.77ATP-dependent DNA helicase recG OS=Helicobacter py... [more]
MFD_BORBU1.146e-2131.67Transcription-repair-coupling factor OS=Borrelia b... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-005-E05-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735821 ID=EY735821; Name=EY735821; organism=Citrus sinensis; type=EST; length=864bp
CACGCGTCCGGGTACACAATTTGAGAAAGAGGGATTGCTGGATAAGTACA
GAAAACCTAGATTAAATGCTGCATATATGGAGGGATGGTCCAGTCTGACC
AAGAAACTTTTAAGAGCTCTTCCTTATTCCCTTACGTCTAGTCAGCTAAG
TGCCATTTCAGAAATTATATGGGATCTCAAGCAACCAGTTCCTATGAATC
GGCTTTTGCAGGGTGATGTTGGATGTGGTAAAACTGTGGTAGCTTTTTTG
GCTTGCATGGAGGTTATAGGCTCTGGTTATCAGGCAGCTTTTATGGTTCC
AACTGAGTTGCTTGCAACCCAGCACTATGAGCACTTGCTTAAATTGCTAG
ATAATATGGAGGAGGACAAGCACAAACCTAAAATTGCCTTACTAACAGGT
TCAACACCAGTAAAACAATCCCGGATGATCCGTAAGGATCTTCAAACTGG
AGATATCACTCTGGTCATTGGAACCCATAGTTTAATTGCTGAAAAAGTTG
AATTTTCTGCTTTACGCCTCGCTATTGTGGATGAACAACAACGCTTTGGT
GTGGTACAGAGAGGCAGATTTAACAGTAAGTTATATTATACCTCCATGAG
TTCAGGTATGGCAATGGTTAATTCAGACGGGTCTCCAAAAGATGATCAAC
ATATGGCTCCTCATGTTCTTGCCATGTCAGCCACTCCTATCCCAAGAACG
CTTGCTTTGGCATTATATGGGGATATGTCCCTTACACAGATAACTGACTT
ACCTCCCAGAAGGATACCTATTAAGACCTACATCATTGAAGGAAATGAGA
AGGGCTATGAGAATGTGTACAAGATGATGCTTGACGAACTGNCATCAGGT
GGAAAATGTCCCTT
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