EY735819

Overview
NameEY735819
Unique NameEY735819
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735819 vs. ExPASy Swiss-Prot
Match: LRC45_HUMAN (Leucine-rich repeat-containing protein 45 OS=Homo sapiens GN=LRRC45 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.262e-12
Identity = 54/161 (33.54%), Postives = 79/161 (49.07%), Query Frame = 2
Query:   44 IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA--DGAKALSEVLKFHGNINTLKLGWCQIGAIGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANED 520
            + +EGA  +   L  N  +  +DL GNN+ + GA A+ ++L+ N  I SL L +N +G   D        L  +G +  L L   QI   GAE +A  L+ N T+  LDLR N +   G + L       N  L  +DLA N I  D   A+ QA+  ++D
Sbjct:   70 LSEEGATLLLRGLCANTVLRFLDLKGNNLRAAGAEALGKLLQQNKSIQSLTLEWNSLGTWDDAFATFCGGLAANGALQRLDLRNNQISHKGAEELALALKGNTTLQQLDLRWNNVGLLGGRALMNCLP-SNRTLWRLDLAGNNIPGDVLRAVEQAMGHSQD 229          
BLAST of EY735819 vs. ExPASy Swiss-Prot
Match: RAGP1_ARATH (RAN GTPase-activating protein 1 OS=Arabidopsis thaliana GN=RANGAP1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.153e-12
Identity = 51/205 (24.88%), Postives = 107/205 (52.20%), Query Frame = 2
Query:   23 INLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAIGAEFVAD-MLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAXTSLNLANNFLTKFGQSALTDAKDLVYEMSDKEVNI 634
            +  + N  GDEGA  IA+ +++  ++         I S+G  A+A  L+  S +  LDL  N  G +G  AL++ L    ++  + + +  +   G E +++ +L+   ++ +L+L  N +  +    LA       ++L  ++L+ NE++D+G   IA+A++ ++ +    ++L+ N + + G  AL  A+ +V + + K +NI
Sbjct:  270 LQFHNNMTGDEGATAIAEIVRECPSLEDFRCSSTRIGSEGGVALAEALEHCSHLKKLDLRDNMFGVEGGIALAKTLSVLTHLTEIYMSYLNLEDEGTEALSEALLKSAPSLEVLELAGNDITVKSTGNLAACI-ASKQSLAKLNLSENELKDEGTILIAKAVEGHDQL--VEVDLSTNMIRRAGARAL--AQTVVKKNTFKLLNI 469          
BLAST of EY735819 vs. ExPASy Swiss-Prot
Match: NAL14_HUMAN (NACHT, LRR and PYD domains-containing protein 14 OS=Homo sapiens GN=NLRP14 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.812e-12
Identity = 52/198 (26.26%), Postives = 99/198 (50.00%), Query Frame = 2
Query:    5 ASGLLWINLYMNDIGDEGAEKIADALKQNRT-ITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKF-HGNINTLKLGWCQIGAIGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAXTSLNLANNFLTKFGQSALTDA 592
            +  L+++NL  N++ D+G + + +AL+  +  +  + L    +   G   ++  L  N  +T L LA N +G  G K +S+ L+     + +L L  C   ++ +E+++  L +N +++ LDL +N L+D G K L   F+  +  L  ++L    + +     +A  +  N ++   SL+L NN L   G   L DA
Sbjct:  785 SQSLIFLNLSTNNLLDDGVQLLCEALRHPKCYLERLSLESCGLTEAGCEYLSLALISNKRLTHLCLADNVLGDGGVKLMSDALQHAQCTLKSLVLRRCHFTSLSSEYLSTSLLHNKSLTHLDLGSNWLQDNGVKLLCDVFRHPSCNLQDLELMGCVLTNACCLDLASVILNNPNL--RSLDLGNNDLQDDGVKILCDA 980          
BLAST of EY735819 vs. ExPASy Swiss-Prot
Match: LRC45_CHICK (Leucine-rich repeat-containing protein 45 OS=Gallus gallus GN=LRRC45 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.673e-12
Identity = 49/161 (30.43%), Postives = 82/161 (50.93%), Query Frame = 2
Query:   44 IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA--DGAKALSEVLKFHGNINTLKLGWCQIGAIGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANED 520
            + ++G + +   L  N T+ ++DL GNN+ + GA A+ ++L+ N  I SL L +N +G   +G     + L  +  +  L L   QI   GA  +A  L+ N ++  LDLR N +   G + L    +  N+ L  ++LA N +  D   A+ QA+  N D
Sbjct:   70 LSEDGVKLLLHGLCSNSTVKSLDLKGNNLRTTGAEALGKLLRQNKSIRSLILEWNSLGVWEEGFSFFCQGLGANNFLQRLDLRNNQINHHGAGELAMALKRNASLQELDLRWNNIGLLGGRALLNCLQ-SNKTLKKLELAGNNVPSDILKAVEQAMDHNRD 229          
BLAST of EY735819 vs. ExPASy Swiss-Prot
Match: RAGP2_ARATH (RAN GTPase-activating protein 2 OS=Arabidopsis thaliana GN=RANGAP2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.381e-11
Identity = 50/217 (23.04%), Postives = 104/217 (47.93%), Query Frame = 2
Query:   23 INLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAIGAEFVADMLRYN-NTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAXTSLNLANNFLTKFGQSALTD--AKDLVYEMSDKEVNIFXLEDLSYSK 664
            ++ + N  GDEGA  IA+ +K++  +         + SKG  A++  L+  + +  LDL  N  G +   +LS+ L    ++  L L +  +   GA  + + L+ + + I +L++  N +  E A  +A +     + L  ++L+ NE++D+G   IA  ++         ++++ N++ + G  AL     K   +++ + + NI   E +   K
Sbjct:  275 LHFHNNMTGDEGALAIAEVVKRSPLLENFRCSSTRVGSKGGIALSEALEHCTHMEKLDLRDNMFGTEAGVSLSKTLSSFKHMTELYLSYLNLEDEGAIAIVNALKESASPIEVLEMAGNDITVEAASAIA-ACVAAKQDLNKLNLSENELKDEGCVQIANCIEEGHS-KLQYIDMSTNYIRRAGARALAHVVVKKEAFKLLNIDGNIISEEGIEELK 489          
BLAST of EY735819 vs. ExPASy Swiss-Prot
Match: NAL14_MOUSE (NACHT, LRR and PYD domains-containing protein 14 OS=Mus musculus GN=Nlrp14 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.109e-11
Identity = 51/194 (26.29%), Postives = 93/194 (47.94%), Query Frame = 2
Query:   17 LWINLYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKF-HGNINTLKLGWCQIGAIGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAXTSLNLANNFLTKFGQSALTDA 592
            +++NL +N++ ++G + + + L+  N ++  + L    +   G   ++  L  +  +T L L+ N +  +G K LS  LK     + +L L  C    IG+E ++  L +N ++  LDL  N L D G K L  S +  +  L  ++L    +       +A  L  N ++   SL+L +N L   G + L DA
Sbjct:  690 VFLNLSLNNLSNDGVKSLCEVLENPNSSLERLALASCGLTKAGCKVLSSALTKSKRLTHLCLSDNVLEDEGIKLLSHTLKHPQCTLQSLVLRSCSFTPIGSEHLSTALLHNRSLVHLDLGQNKLADNGVKLLCHSLQQPHCNLQELELMSCVLTSKACGDLASVLVNNSNL--WSLDLGHNILDDAGLNILCDA 881          
The following BLAST results are available for this feature:
BLAST of EY735819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
LRC45_HUMAN1.262e-1233.54Leucine-rich repeat-containing protein 45 OS=Homo ... [more]
RAGP1_ARATH2.153e-1224.88RAN GTPase-activating protein 1 OS=Arabidopsis tha... [more]
NAL14_HUMAN2.812e-1226.26NACHT, LRR and PYD domains-containing protein 14 O... [more]
LRC45_CHICK3.673e-1230.43Leucine-rich repeat-containing protein 45 OS=Gallu... [more]
RAGP2_ARATH2.381e-1123.04RAN GTPase-activating protein 2 OS=Arabidopsis tha... [more]
NAL14_MOUSE3.109e-1126.29NACHT, LRR and PYD domains-containing protein 14 O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-005-E03-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735819 ID=EY735819; Name=EY735819; organism=Citrus sinensis; type=EST; length=861bp
CCACGCGTCCGGCTTGTTGTGGATAAATCTTTACATGAATGACATTGGTG
ATGAGGGAGCTGAAAAAATTGCAGATGCTCTGAAGCAAAACCGGACAATA
ACAACCATAGACCTGGGAGGAAATAACATACATTCTAAGGGAGCTAGTGC
AATAGCCCGGGTGTTGAAAGATAATTCTGTCATCACAAGTTTGGACCTAG
CTTATAATCCCATTGGAGCTGATGGAGCAAAGGCTTTATCAGAGGTTCTG
AAGTTCCATGGAAACATAAACACCCTTAAGCTTGGTTGGTGTCAGATAGG
AGCCATTGGTGCAGAATTTGTTGCGGACATGTTGAGATATAACAATACCA
TATCTATACTGGACTTGCGAGCAAATGGACTTAGAGATGAAGGTGCGAAG
TGCCTGGCTCAAAGCTTCAAAGTGGTCAATGAAGCTTTGACGTCAATTGA
TTTGGCATTTAATGAAATAAGGGACGATGGGGCTTTTGCTATAGCTCAAG
CACTCAAGGCTAATGAAGATGTGGCANTCACGTCTCTAAACCTTGCTAAT
AATTTTCTTACGAAATTTGGCCAGAGTGCTCTCACAGATGCAAAAGACCT
TGTATATGAAATGAGTGACAAGGAAGTCAACATTTTTNTTCTAGAAGATC
TTTCATATAGTAAAGGAGGAAAATAGTCAGTGGCTGTGTATTAGACCAGT
GGCCCATCCTTTCGGTTTATGCCTTTGGCCGGCAAGTAATGGTTAGAACC
CCTTCGCTTGGGTCCTATATGACGAACCACCCTCACTGACTGGAGGAACA
TTTGGAATTTTGACATGGAGCAGGTGTACTCCGCTTTCCCTCGGTGGCTA
ATGCATCGTCT
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