EY735685

Overview
NameEY735685
Unique NameEY735685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735685 vs. ExPASy Swiss-Prot
Match: GLGB_SYNE7 (1,4-alpha-glucan-branching enzyme OS=Synechococcus elongatus (strain PCC 7942) GN=glgB PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.497e-11
Identity = 40/136 (29.41%), Postives = 70/136 (51.47%), Query Frame = 2
Query:   11 KRGFHKYWGTRMFIYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILANEILHALHPNIITIAEDATYYPGLCEPTTQGGLGFDYFLNLSASEMWLSFLENTP 418
            ++G H+ WGT +F Y   +V +FL +N  +W  +Y IDG +  +++SM+Y             EY  +  + +A  +L   N ++ +  P  ++IAE++T +P +  PT  GGLGF+   N+      L +    P
Sbjct:  398 RQGEHREWGTLVFNYGRHEVRNFLAANALFWFDKYHIDGIRVDAVASMLYLDYNRKEGEWIPNEYGGR-ENIEAADFLRQVNHLIFSYFPGALSIAEESTSWPMVSWPTYVGGLGFNLKWNMGWMHDMLDYFSMDP 532          
BLAST of EY735685 vs. ExPASy Swiss-Prot
Match: GLGB_RHOPA (1,4-alpha-glucan-branching enzyme OS=Rhodopseudomonas palustris GN=glgB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.497e-11
Identity = 39/139 (28.06%), Postives = 70/139 (50.36%), Query Frame = 2
Query:    8 PKRGFHKYWGTRMFIYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILANEILHALHPNIITIAEDATYYPGLCEPTTQGGLGFDYFLNLSASEMWLSFLENTPDH 424
            P +G H  WGT ++ Y   +V++FL +N  +W+  Y IDG +  +++SM+Y         G +        + +A+ ++   N  ++   P+  T AE++T +P +  P   GGLGF Y  N+      L+++   P H
Sbjct:  356 PMQGRHLDWGTLIYNYGRTEVVNFLTANALFWLERYGIDGLRVDAVASMLYLDYS-RPAGGWIPNKFGGRENIEAIDFIRRFNTEVYGKFPHSTTAAEESTAWPQVSRPIEFGGLGFGYKWNMGWMHDTLNYISKDPIH 493          
BLAST of EY735685 vs. ExPASy Swiss-Prot
Match: GLGB_NITHX (1,4-alpha-glucan-branching enzyme OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=glgB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.497e-11
Identity = 40/137 (29.20%), Postives = 70/137 (51.09%), Query Frame = 2
Query:    8 PKRGFHKYWGTRMFIYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILANEILHALHPNIITIAEDATYYPGLCEPTTQGGLGFDYFLNLSASEMWLSFLENTP 418
            P +G H  W T ++ Y   +V++FL++N  +W+  Y +DG +  +++SM+Y     A   G +        + +A+ +L   N  + A  P+  TIAE++T +P +  P   GGLGF Y  N+      L ++   P
Sbjct:  355 PLQGRHLDWDTLIYNYGRTEVVNFLVANALFWLDRYGLDGLRVDAVASMLYLDYSRAE-GGWIPNKHGGRENLEAIAFLRRFNREVFAKFPHATTIAEESTAWPQVSRPIEFGGLGFGYKWNMGWMHDTLDYIGKDP 490          
BLAST of EY735685 vs. ExPASy Swiss-Prot
Match: GLGB_GRABC (1,4-alpha-glucan-branching enzyme OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=glgB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.497e-11
Identity = 46/180 (25.56%), Postives = 90/180 (50.00%), Query Frame = 2
Query:    8 PKRGFHKYWGTRMFIYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDAL---LYLILANEILHALHPNIITIAEDATYYPGLCEPTTQGGLGFDYFLNLSASEMWLSFLENTP-DHEWSMSKIVSTLVGNGQYSDKMIMYAENHNQCISGGHS 535
            P+ G+H  W T ++     +V  FL+S+   W+  +  D  +  +++SM+Y    ++   G  E   N Y  ++ L    +L   + ++ +  P  + IAE++T +PG+  P  +GGLGFDY  N+      L +++  P +  W   ++   LV    +S+K ++   +H++ + G  S
Sbjct:  370 PREGYHYDWNTYIYNLGRNEVRAFLISSAVHWLTYFHADALRVDAVASMLY--RDYSRKHG--EWIPNMYGGRENLESVSFLQHLSTVVKSRAPGAVLIAEESTAWPGVTRPAHEGGLGFDYKWNMGWMHDTLHYMQEDPVNRSWHHDQMTFGLV--YAFSEKFVL-PLSHDEVVHGKRS 542          
BLAST of EY735685 vs. ExPASy Swiss-Prot
Match: GLGB_BRASB (1,4-alpha-glucan-branching enzyme OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=glgB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.792e-11
Identity = 42/139 (30.22%), Postives = 67/139 (48.20%), Query Frame = 2
Query:    8 PKRGFHKYWGTRMFIYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILANEILHALHPNIITIAEDATYYPGLCEPTTQGGLGFDYFLNLSASEMWLSFLENTPDH 424
            P +G H  WGT ++ Y   +V +FL SN  +W+  Y IDG +  +++SM+Y      S  G +        + +A+ +L   N  +    P   T AE++T +P +  P   GGLGF Y  N+      L ++   P H
Sbjct:  354 PMQGRHLDWGTLIYNYGRTEVANFLRSNALFWLERYGIDGLRVDAVASMLYLDYSRPS-GGWIPNKYGGRENLEAIEFLRRTNIEVFGHFPQATTAAEESTAWPQVSRPVDIGGLGFGYKWNMGWMHDTLRYVGKDPIH 491          
The following BLAST results are available for this feature:
BLAST of EY735685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
GLGB_SYNE77.497e-1129.411,4-alpha-glucan-branching enzyme OS=Synechococcus... [more]
GLGB_RHOPA7.497e-1128.061,4-alpha-glucan-branching enzyme OS=Rhodopseudomo... [more]
GLGB_NITHX7.497e-1129.201,4-alpha-glucan-branching enzyme OS=Nitrobacter h... [more]
GLGB_GRABC7.497e-1125.561,4-alpha-glucan-branching enzyme OS=Granulibacter... [more]
GLGB_BRASB9.792e-1130.221,4-alpha-glucan-branching enzyme OS=Bradyrhizobiu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-003-F11-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735685 ID=EY735685; Name=EY735685; organism=Citrus sinensis; type=EST; length=901bp
CACGCGTCCGAAACGAGGTTTTCACAAATATTGGGGAACCAGGATGTTCA
TATATGATGACCTTGATGTGCTACATTTTCTCCTTTCAAATCTGAATTGG
TGGGTTGTGGAATATCAGATTGACGGTTTTCAGTTCCATTCCCTCTCATC
AATGATATATACGCACAATGGTTTTGCTTCTTTAACGGGTGACTTGGAGG
AGTACTGCAATCAGTATGTTGACAAGGATGCATTATTATATCTTATTTTG
GCAAATGAGATACTGCATGCTCTTCATCCAAATATTATAACAATTGCTGA
AGATGCAACATATTATCCTGGACTATGTGAACCAACTACTCAAGGCGGAT
TGGGATTTGATTATTTTCTCAATCTTTCTGCATCAGAGATGTGGTTGTCG
TTTCTTGAGAATACTCCTGATCACGAATGGAGCATGAGCAAGATTGTCAG
CACATTAGTGGGCAATGGGCAATATTCCGATAAGATGATTATGTATGCCG
AAAACCATAATCAGTGCATATCTGGAGGGCATTCATTTGCAGAGATATTG
TTTGGTGAAATCTCAGAGCATTCTCCTGAGCCAACTAATTGGTTGGCGCA
CAGGGCGTCCCCGGCCCCACATGGACCCGATTGAGGCCCTTGACTCGGCG
GCTGGGTCTGTGGGATGACCAATTAGACTGGGCAACAGAATGTCGGGCTG
GCGGAAGAGGGGAAAGGTGCGCAGGGGGAGGGGGAGGGGGAATTGATTTC
CCCCCCCCCAGCGCGACCCGGAAAAGGGGCAGCGAAGCCGGGGCGGCGGT
CGCCGGCCGGCGCCGCGGAGGCGGGCGCGCACCGGCTCGGGTGCCCGGGC
CCGGCGCCCCCGCCCCCAGGCGACCACGCGTGGAGGCTGGTCGCGAGGGC
G
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